LOCUS       NZ_CP068976             1395 bp    DNA     linear   CON 16-MAY-2024
DEFINITION  Klebsiella pneumoniae strain fekpn2511 plasmid pfekpn2511-4.
ACCESSION   NZ_CP068976
VERSION     NZ_CP068976.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17506720
            Assembly: GCF_016800965.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1395)
  AUTHORS   Hu,L.M., Zhang,X.T., Zeng,X., Chen,Y., Liu,L. and Li,G.Q.
  TITLE     Genomic Characterization of a Carbapenemase-Producing, Extensively
            Drug-Resistant Klebsiella michiganensis Strain from a Renal Abscess
            Patient
  JOURNAL   Microbiol Resour Announc 11 (12), e0082522 (2022)
   PUBMED   36321904
REFERENCE   2  (bases 1 to 1395)
  AUTHORS   Zhang,X.T.
  TITLE     ESBL klebsiella pneumoniae
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 1395)
  AUTHORS   Zhang,X.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-JAN-2021) Clinical Research institute, University of
            South China, 35 Liberation Ave., Hengyang 421001, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: unicycler v. 0.4.8; SPAdes v. 3.1.14
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 50.0x
            Sequencing Technology             :: Illumina MiSeq; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016800965.1-RS_2024_05_16
            Annotation Date                   :: 05/16/2024 03:54:16
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,427
            CDSs (total)                      :: 5,302
            Genes (coding)                    :: 5,153
            CDSs (with protein)               :: 5,153
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 149
            CDSs (without protein)            :: 149
            Pseudo Genes (ambiguous residues) :: 0 of 149
            Pseudo Genes (frameshifted)       :: 72 of 149
            Pseudo Genes (incomplete)         :: 82 of 149
            Pseudo Genes (internal stop)      :: 37 of 149
            Pseudo Genes (multiple problems)  :: 29 of 149
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP068976.1.
            Bacteria and source DNA available from Xiaotuan Zhang, The Second
            Affiliated Hospital, University of South China, 35 AVE. jiefang,
            Hengyang, Hunan province.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1395
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="fekpn2511"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pfekpn2511-4"
                     /geo_loc_name="China:Hengyang, Hunan"
                     /lat_lon="26.89 N 112.57 E"
                     /collection_date="2019-12-25"
                     /collected_by="XiaoTuan Zhang"
     gene            complement(33..>1395)
                     /locus_tag="JN237_RS27000"
                     /old_locus_tag="JN237_27000"
                     /pseudo=""
     CDS             complement(33..>1395)
                     /locus_tag="JN237_RS27000"
                     /old_locus_tag="JN237_27000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001138014.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="incomplete; too short partial abutting assembly gap;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=2
                     /transl_table=11
                     /product="Tn3-like element TnAs1 family transposase"
                     /name="Tn3-like element TnAs1 family transposase"
ORIGIN
        1 gggagcccgc agaattcgga aaaaatcgta cgctaaggtt ttccgggcat ccgtaagggc
       61 cgaaacttcc cgtcttccag tctgcggctc tgccgccaga cgtaatcgcc ggttaggttg
      121 atgtgctccc agcccagcgg cgacaggaat tgcagcagct cgccgtccac cggcttgccg
      181 gcctcgacca acccctgggt ggcgcgttcc aggtacaccg tgttccacag cacgatagcc
      241 gccgtcacca ggttgaggcc gctggcccgg tagcgctgct gctcgaagct ccgatccctg
      301 atttccccaa ggcggttgaa gaacaccgcc ctggccagcg agttgcgcgc ctcacctttg
      361 ttcaggccgg catgcacgcg gcggcgcagt tcaacacttt gcagccagtc caggatgaac
      421 agcgtgcgct cgatccggcc cagctcgcgc agggccacgg ccagtccgtt ctggcgcggg
      481 tagctgccga gcttgcgcag catcagcgag gcggtgacgg tgccctgctt gatcgagctg
      541 gccaggcgca ggatgtcgtc ccagtgggca cgcacgtgct tgatgttcag ggtgccgccg
      601 atcagcgggc gcaacgtcgg gtaggcttgc acgccctgcg gcacgtacag cttggtttcg
      661 ccgaggtcgc ggatgcgcgg cgcgaagcgg aagcctagca ggtgcatcag ggcaaagacg
      721 tgatcggtga agccggccgt gtcggtgtag tgctcctcga tccgcaggtc ggactcgtgg
      781 tacagcaggc cgtcgagcac ataggtggaa tcgcggacgc cgacattcac cacgcgggtg
      841 ctgaacggcg cgtactggtc ggagatatgg gtatagaaca gccgtcccgg ctcgctaccg
      901 tacttcgggt tgacgtgccc ggtgctctcg ccccggccac ccgcgcggaa gcgctggcca
      961 tcggaggatg aggtcgtgcc gtcgccccag tgggcggcaa aggcgtggcg atactggtgg
     1021 ttgaccagct cggccaaggc cgccgaatag gtttcgtcgc ggatgtgcca ggcttgcagc
     1081 caggacagct tggcgtaggt caggccgggg ctcgactcgg ccatcttggt cagcccgagg
     1141 ttgatcgcat caccgaggat tgcggacagc agcaacgtcc tgtctttggc ctcggccccg
     1201 tccttcaagt gggtgaagtg gcggctgaag cccgtccagt cgtccacgtc catcagcagt
     1261 tcggtgatct tgatgcgcgg cagtaactgg ctggtttggt cgatcagcgc ctgcgcccga
     1321 tccggcaccg ccgcatccag cggggtgatt ttcagccctg actcggtgag gatggcatcg
     1381 ggcagctcgt tgtcc
//
