LOCUS       NZ_CP068236             2507 bp    DNA     circular CON 20-JUN-2024
DEFINITION  Leclercia adecarboxylata strain YZ30 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP068236
VERSION     NZ_CP068236.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17257735
            Assembly: GCF_023612295.1
KEYWORDS    RefSeq.
SOURCE      Leclercia adecarboxylata
  ORGANISM  Leclercia adecarboxylata
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Leclercia.
REFERENCE   1  (bases 1 to 2507)
  AUTHORS   Wu,S.
  TITLE     Genome analysis of a catechol degrading strain YZ30
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2507)
  AUTHORS   Wu,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JAN-2021) Academy of Life Sciences, Mianyang Teacher's
            College, Mianxing West Road, Mianyang, Sichuang 621016, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 20-SEP-2019
            Assembly Method                   :: SOAPdenovo v. 2.04
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Illumina HiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023612295.1-RS_2024_06_20
            Annotation Date                   :: 06/20/2024 03:57:16
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,668
            Genes (coding)                    :: 4,580
            CDSs (with protein)               :: 4,580
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 88
            CDSs (without protein)            :: 88
            Pseudo Genes (ambiguous residues) :: 0 of 88
            Pseudo Genes (frameshifted)       :: 37 of 88
            Pseudo Genes (incomplete)         :: 50 of 88
            Pseudo Genes (internal stop)      :: 21 of 88
            Pseudo Genes (multiple problems)  :: 18 of 88
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP068236.1.
            Bacteria and source DNA available from Key Laboratories for
            Molecular Biology and Biopharmaceuticals, Mian Yang Teachers
            College.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2507
                     /organism="Leclercia adecarboxylata"
                     /mol_type="genomic DNA"
                     /strain="YZ30"
                     /isolation_source="Garlic rhizosphere soil"
                     /db_xref="taxon:83655"
                     /plasmid="unnamed2"
                     /geo_loc_name="China:jining"
                     /collection_date="2019-09-20"
     gene            339..524
                     /locus_tag="JJN11_RS23845"
                     /old_locus_tag="JJN11_23770"
     CDS             339..524
                     /locus_tag="JJN11_RS23845"
                     /old_locus_tag="JJN11_23770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(815..1018)
                     /locus_tag="JJN11_RS23850"
                     /old_locus_tag="JJN11_23775"
     CDS             complement(815..1018)
                     /locus_tag="JJN11_RS23850"
                     /old_locus_tag="JJN11_23775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_069377315.1"
                     /translation="MTLSDDERHLLVSVVSVWLRRAGGDAGGDAGAMMLDAYRQILSET
                     EPAVRTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     gene            2253..2480
                     /locus_tag="JJN11_RS23855"
                     /old_locus_tag="JJN11_23780"
     CDS             2253..2480
                     /locus_tag="JJN11_RS23855"
                     /old_locus_tag="JJN11_23780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     Typing          complement(572..659)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          1310..1838
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 gtggcctttt tctttacctg tggttctccg ccaaaatccc agcaaattgc atcaccaaag
       61 ctaaaagctt tcagggttgt ctaaaaagca caagacataa gaggaagtgc ggtattttat
      121 aatcaagccc ccaagaattt accataacat ccgttgcccg caccgcctga gacgcgttca
      181 gcgcgttcct gacgaaacca tgacaaaaac cacaacaaac caccccggaa cccgtcagaa
      241 acgcgcctgt taaattttaa cggcatgcat gactatgcac cagaatgacg ccatgctctt
      301 ttcacgcaaa aatcatcacc agacggggaa aatcaccagt gaccagacag gaatccgccg
      361 ccctcaatat ggccaaattt atccgcgcac agacacttct cctccttgag cggctcgagc
      421 agatggatct ggatgaggct gccggctgct gtgagcacct gcacgatcag gccgaagcgc
      481 tttacgccat gctgaacgca cagataggcg aggaaaatgc gtgaaaatcg gtgaacgggt
      541 gcgcaattca gtgcgcggcc gtgaggcgat ggcggggtgt cggggcgcag ccctgaccag
      601 ggtatttgtg atgccggcgc gtgcgcggta ttacaaatgc acatcctgtc ccggaacgga
      661 caccgggaaa cagcaaaaaa aaccgggcgg cacgcccgga actcaatcaa gttagattag
      721 attactctca ctcgtccata acagcatcat ggaacgacga ccaccgtccg tgacggccgc
      781 ctcgtttaag tatggacaga aatacagaaa atgctcagga cgaaatgtaa tgaatgcgaa
      841 cggattcaag aaattcgagc atgacagtcc ttacggccgg ttcggtttca gacaaaatct
      901 gccggtatgc atccagcatc atggctccgg catcccctcc ggcatcccct ccggcacgcc
      961 gtagccagac cgaaacaacg gacacaagca ggtgtcgctc atcatcacta agagtcatca
     1021 gggctccgga agaaaaacca aacatggctt acctactgtt aacggcaacg cagaagaaag
     1081 gtttacaggg tagcgggcag ggatgaaaaa aaaaaaattg cagtcaggcc ggaacggctg
     1141 ctgaaccggt acaggcgggt tccgggcgca gcgccggacc agtcacggag cactagcgga
     1201 gtgtatactg gcttaagatg tagcatggca gtaacacata gcattaatgc cacataagac
     1261 aggcgcagaa agtgaaagaa aacgcgtcag gagaaaatgt gatacagaat atattccgct
     1321 tcctcgctca ctgactcgct ccgctcggtc gttcggctgc ggcgagcggg acgggcttac
     1381 ggatggatca gaaatttcct gggggatgcc aggaagatac ttaacgaaga aagcataagg
     1441 ccgcgccaaa gccgtttttc cataggctcc gcccccctga caagcatcac agaatctgac
     1501 gctcaaatca gtggtggcga aacccgatgc ggcttaaaga taccaggcgt ttccccctgg
     1561 tggctccctc gtgctccccc gcattcctgc ctttcggttt accggtgtca ctccgctgtt
     1621 atggccgcgg tttctcattc cacgcctgac actcagttcc gggaaggcag ttcgctccag
     1681 gatggactgt atgcacgaac cccccgttca gtccgaccgc tgcgccttat ccggtaacta
     1741 tcaacttgag tccaacccgg aaagacacga ctaatcgcca ttggcaacgg ccattggcaa
     1801 acaggatgtg cgagagatgt ctcaagagtt cttgaagtgg cggccttagt gaggctacac
     1861 tgaaaggaca aatttggtga catgtctcgc acaagactgt taccacggtt aggggatctg
     1921 ccaggattac ctaaccttcg aaaaaccacc tgccagggtg gttttttcgt ttacagggca
     1981 agagattacg cgcggaaaaa aaggatctca agaagatcct ttataaatta gacatccaac
     2041 ctcacaaaga ggaatactta aatcatcttg gtatatgtat cggccggatt acatctcata
     2101 taagcctcct ccccgcctga caccacactt tgaccatagc acctcgcgcc taactcgata
     2161 tacagcccac catcaagcct cttttcacat aaaaaatgac ctatagttag atggttagtg
     2221 accaaaactg atatggataa aaggagctgg ctttgaaaaa gatttttgtt tcagtgttcg
     2281 cagcggcagt tgcgctttca gccctcaccg gctgcacgcg cacaagctat gccatacaca
     2341 ccaatgacgg tcgcactatt gtcagcgacg gcaaacctaa agaatcagac tcaggcctgc
     2401 ttggctatac agacgcgaat ggtgtcaaac agcagatcaa taaaaccgac gttaaagaag
     2461 tctccgaaat tccgcactga gcatcttctc cgaaaaaggc cgctaat
//
