LOCUS       NZ_CP068076             4846 bp    DNA     circular CON 06-FEB-2024
DEFINITION  Staphylococcus condimenti strain FDAARGOS_1148 plasmid unnamed3,
            complete sequence.
ACCESSION   NZ_CP068076
VERSION     NZ_CP068076.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16357317
            Assembly: GCF_016724565.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus condimenti
  ORGANISM  Staphylococcus condimenti
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 4846)
  AUTHORS   Sproer,C., Gronow,S., Severitt,S., Schroder,I., Tallon,L.,
            Sadzewicz,L., Zhao,X., Boylan,J., Ott,S., Bowen,H., Vavikolanu,K.,
            Mehta,A., Aluvathingal,J., Nadendla,S., Lowell,S., Myers,T., Yan,Y.
            and Sichtig,H.
  TITLE     FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS):
            Supporting development and validation of Infectious Disease Dx tests
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4846)
  AUTHORS   Sproer,C., Gronow,S., Severitt,S., Schroder,I., Tallon,L.,
            Sadzewicz,L., Zhao,X., Boylan,J., Ott,S., Bowen,H., Vavikolanu,K.,
            Mehta,A., Aluvathingal,J., Nadendla,S., Lowell,S., Myers,T., Yan,Y.
            and Sichtig,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JAN-2021) Institute for Genome Sciences, University of
            Maryland School of Medicine, BioPark II, 801 W. Baltimore St., Suite
            619, Baltimore, MD 21201, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: SMRT v. 8.0.0, HGAP v. 4, SPAdes v. 3.11.1
            Genome Coverage                   :: 1434.04x
            Sequencing Technology             :: Pacbio; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/06/2024 04:22:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,595
            CDSs (total)                      :: 2,512
            Genes (coding)                    :: 2,479
            CDSs (with protein)               :: 2,479
            Genes (RNA)                       :: 83
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 14 of 33
            Pseudo Genes (incomplete)         :: 15 of 33
            Pseudo Genes (internal stop)      :: 10 of 33
            Pseudo Genes (multiple problems)  :: 6 of 33
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP068076.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4846
                     /organism="Staphylococcus condimenti"
                     /mol_type="genomic DNA"
                     /strain="FDAARGOS_1148"
                     /culture_collection="DSM:11674"
                     /type_material="type strain of Staphylococcus condimenti"
                     /db_xref="taxon:70255"
                     /plasmid="unnamed3"
                     /geo_loc_name="Germany: Braunschweig"
                     /collected_by="DSMZ"
     gene            156..1100
                     /locus_tag="I6J05_RS12895"
                     /old_locus_tag="I6J05_12895"
     CDS             156..1100
                     /locus_tag="I6J05_RS12895"
                     /old_locus_tag="I6J05_12895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000277654.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_016913209.1"
                     /translation="MSKNNYTNHSNHLENHDSDNFSKTGYSNSRLDAHTVCISDPKLSF
                     DAMTIVGNLNRDNAQALSKFMSVEPQIRLWDILQTKFKAKALQEKVYIEYDKVKADSWD
                     RRNMRIEFNPNKLTRDEMIWLKQNIISYMEDDGFTRLDLAFDFEDDLSDYYAMSDKAVK
                     KTIFYGRNGKPETKYFGVRDSNRFIRIYNKKQERKDNADAEVMSEHLWRVEIELKRDMV
                     DYWNDCFSDLHILQPDWKTIQRTADRAIVFMLLSDEEEWGKLHRNSRTKYKNLIKEISP
                     VDLTDLMKSTLKANEKQLQKQIDFWQHEFKFWK"
                     /name="replication initiation factor domain-containing
                     protein"
     gene            1262..2641
                     /gene="tet(K)"
                     /locus_tag="I6J05_RS12900"
                     /old_locus_tag="I6J05_12900"
     ARG             1263..2638
                     /name="tet(K)"
                     /gene="tet(K)"
                     /gene_name="tetracycline efflux MFS transporter Tet(K)"
                     /tool="amrfinderplus"
                     /drug_class="TETRACYCLINE"
                     /identity="100.0"
                     /coverage="100.0"
     gene            2828..4039
                     /gene="mobV"
                     /locus_tag="I6J05_RS12905"
                     /old_locus_tag="I6J05_12905"
     CDS             2828..4039
                     /gene="mobV"
                     /locus_tag="I6J05_RS12905"
                     /old_locus_tag="I6J05_12905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002493196.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_201626117.1"
                     /translation="MSYSIIRVSKVKTGTNTTGIQKHVQRENNNYENEDIDHSKTYLNY
                     DLVNANKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTKQFF
                     EYAKEFLEQEYGKDNLLYATVHMDEKTPHMHYGVVPITDDGRLSAKEVVGNKKALTEFQ
                     DRFNEYVNQRGYDLDRGQSRQVTNAKHDQVNRYKQKTEYHKQEYERESQKLSHIQQKSS
                     ELIEQYQKSLETLKKPLNVQYEHETEKVGGLFNKEIQETGNVVISQEEFNNFQKQIQAA
                     QTITEDYEHIKSGKALNELKNENSKLREENKDMSETLARANEFIKDLKKHLDNALNVIK
                     VIREIFEKLEQVLGRNKYQHLMNDVSRDNGRMIKAIQILDKQIHPEEYQEEKNTQKRDR
                     GRGR"
                     /name="mobV"
     gene            4603..4767
                     /locus_tag="I6J05_RS12910"
                     /old_locus_tag="I6J05_12910"
     CDS             4603..4767
                     /locus_tag="I6J05_RS12910"
                     /old_locus_tag="I6J05_12910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001632704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="WP_017722131.1"
                     /translation="MVRTKVGITLTEDTLKRLEEIAEQMGLSKSQAISMLINNEYLSKY
                     QSEDKIFKA"
                     /name="CopG family transcriptional regulator"
     Typing          162..1100
                     /name="rep_cluster_1118"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.362"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          2829..4036
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.015"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cgccaaagtt tgtgatagcg acttacctta aagaaaaaca gttgatgttt ttgttcttaa
       61 tttgtatatc tagatattaa acgatattag tttattcttc aagatatata ttcgggtgag
      121 cgacttctta aattaaatta aggagtcgat tttttatgag taaaaataat tatacaaatc
      181 attcaaatca cttagaaaat cacgattcag acaatttttc taaaaccggc tactctaata
      241 gccggttgga cgcacatact gtgtgcatat ctgatccaaa attaagtttt gatgcaatga
      301 cgatcgttgg aaatctcaac cgagacaacg ctcaagccct ttctaaattt atgagtgtag
      361 agccccaaat aagactttgg gatattcttc aaacaaagtt taaagctaaa gcacttcaag
      421 aaaaagttta tattgaatat gacaaagtga aagcagatag ttgggataga cgtaatatgc
      481 gtattgaatt taatccaaac aaacttacac gagatgaaat gatttggtta aaacaaaata
      541 taataagcta catggaagat gacggtttta caagattaga tttagccttt gattttgaag
      601 atgatttgag tgactactat gcaatgtctg ataaagcagt taagaaaact attttttatg
      661 gtcgtaatgg taagccagaa acaaaatatt ttggcgtgag agatagtaat agatttatta
      721 gaatttataa taaaaagcaa gaacgtaaag ataatgcaga tgctgaagtt atgtctgaac
      781 atttatggcg tgtagaaatc gaacttaaaa gagatatggt ggattactgg aatgattgct
      841 ttagtgattt acatatcttg caaccagatt ggaaaactat ccaacgcact gcggatagag
      901 caatagtttt tatgttattg agtgatgaag aagaatgggg aaagcttcac agaaattcta
      961 gaacaaaata taagaatttg ataaaagaaa tttcgccagt cgatttaacg gacttaatga
     1021 aatcgacttt aaaagcgaac gaaaaacaat tgcaaaaaca aatcgatttt tggcaacatg
     1081 aatttaaatt ttggaaatag tgtacatatt aatattactg aacaaaaatg atatatttaa
     1141 actattctaa tttaggagga tttttttatg aagtgtctat ttaaaaattt ggggaattta
     1201 tatgaggtga aagaataatt tacccctata aactttagtc acctcaagta aagaggtaaa
     1261 attgtttagt ttatataaaa aatttaaagg tttgttttat agcgttttat tttggctttg
     1321 tattctttca ttttttagtg tattaaatga aatggtttta aatgtttctt tacctgatat
     1381 tgcaaatcat tttaatacta ctcctggaat tacaaactgg gtaaacactg catatatgtt
     1441 aactttttcg ataggaacag cagtatatgg aaaattatct gattatataa atataaaaaa
     1501 attgttaatt attggtatta gtttgagctg tcttggttca ttgattgctt ttattggtca
     1561 caatcacttt tttattttga tttttggtag gttagtacaa ggagtaggat ctgctgcatt
     1621 cccttcactg attatggtgg ttgtagctag aaatattaca agaaaaaaac aaggcaaagc
     1681 ctttggtttt ataggatcaa ttgtagcttt aggtgaaggg ttaggtcctt caataggggg
     1741 aataatagca cattatattc attggtctta cctacttata cttcctatga ttacaatagt
     1801 aactatacct tttcttatta aagtaatggt acctggtaaa tcaacaaaaa atacattaga
     1861 tatcgtaggt attgttttaa tgtctataag tattatatgt tttatgttat ttacgacaaa
     1921 ttataattgg acttttttaa tactcttcac aatctttttt gtgattttta ttaaacatat
     1981 ttcaagagtt tctaaccctt ttattaatcc taaactaggg aaaaacattc cgtttatgct
     2041 tggtttgttt tctggtgggc taatattttc tatagtagct ggttttatat caatggtgcc
     2101 ttatatgatg aaaactattt atcatgtaaa tgtagcgaca ataggtaata gtgttatttt
     2161 tcctggaacc atgagtgtta ttgtttttgg ttattttggt ggttttttag tggatagaaa
     2221 aggatcatta tttgttttta ttttaggatc attgtctatc tctataagtt ttttaactat
     2281 tgcatttttt gttgagttta gtatgtggtt gactactttt atgtttatat ttgttatggg
     2341 cggattatct tttactaaaa cagttatatc aaaaatagta tcaagtagtc tttctgaaga
     2401 agaagttgct tctggaatga gtttgctaaa tttcacaagt tttttatcag agggaacagg
     2461 tatagcaatt gtaggaggtt tattgtcact acaattgatt aatcgtaaac tagttctgga
     2521 atttataaat tattcttctg gagtgtatag taatattctt gtagccatgg ctatccttat
     2581 tattttatgt tgtcttttga cgattattgt atttaaacgt tctgaaaagc agtttgaata
     2641 gttatattat attttggttt agaactatga gtggctagca ttttgccact cattttttgc
     2701 gttagcaaaa acaggtttaa gcctcgcaga gcacacgtat taacgactta ttgtaaaata
     2761 agtctagtgt gttagactta aagtattaaa tacctataaa accttagtgc tgaggagtga
     2821 tttttatatg tcgtattcta ttattagagt ttcaaaagtt aaaactggaa caaatacaac
     2881 aggcatacaa aaacatgttc aaagagaaaa taataattat gaaaatgaag atatagacca
     2941 tagtaaaact tacttaaatt atgatttggt aaatgctaat aaacagaatt ttaataactt
     3001 gattgatgaa aaaattgaac agaattatac aggcaaaaga aaaattagaa cagacgcgat
     3061 taaacacatt gatggtttaa ttacatcaga caatgatttc tttgataatc aaacgccaga
     3121 agatacaaag cagttttttg aatatgctaa agagttttta gaacaagaat acggtaaaga
     3181 taatttatta tatgcaacag ttcacatgga cgaaaaaacc ccacatatgc attatggtgt
     3241 tgtccctatc actgatgacg gtagattaag tgcaaaagaa gttgtaggga ataaaaaggc
     3301 gttaacagag tttcaagata gatttaacga atatgttaat caacgtgggt atgatttgga
     3361 ccgaggacaa tcaagacaag ttacaaatgc taaacatgat caggtaaacc gatataagca
     3421 aaaaacagaa tatcataagc aagaatatga gcgtgagagc caaaaattaa gccatataca
     3481 acaaaaaagc agtgagttga tagaacaata ccaaaaatca ttagaaacgc ttaaaaagcc
     3541 tttaaacgtc caatatgaac atgaaactga aaaagtaggt ggattgttca acaaagaaat
     3601 acaagaaaca gggaatgttg taataagcca agaagaattt aataactttc agaaacaaat
     3661 acaagcagca caaacgatta cagaagatta tgagcatatt aagtctggta aagcgttgaa
     3721 tgagcttaaa aatgaaaata gtaagcttag agaagaaaac aaggatatgt ctgaaacttt
     3781 agcaagagca aatgagttta taaaagacct caaaaaacac cttgataatg cgcttaatgt
     3841 tattaaagtt attagagaga tttttgagaa gttagagcaa gttcttggta gaaataaata
     3901 ccagcatttg atgaatgatg taagtagaga taatggtcgt atgataaagg cgatacaaat
     3961 attagataaa caaatacatc ctgaagaata tcaagaagaa aagaatacgc aaaaacgtga
     4021 taggggtaga ggtagataaa taaaaacgcc actctaaaaa tagaatggcg ttcaaaacct
     4081 ttaaagaatt gttttaagta tatctaattt aattataccc acatttatgc cgagaaaact
     4141 ttttggttgg aataatgaaa tgtgatagct aacttgttag cgagttggtt gggcttgaat
     4201 tgggattaat cccaagaaag taccaactca acatcacatg gaattgttgg ttccgaccaa
     4261 aaaggaaatt ggaataaaaa ataaattgag ttaatggttt aggttttagg gctaacttca
     4321 cgaagtgatc tgttagccct gtttttgtat tttgctttag aatttatcaa atttagttgg
     4381 aaaaaggggg actactacga cccccccttt taagtgccga gtgccaaatc agagattgtg
     4441 aagtgtttag acctttaata tcaagggtta tagcgatttt tcacaaagct acaaataggc
     4501 tacattttag ggactttatg agttattgta tagaaatctc tagacatgta tgtataaatg
     4561 gaataaaata aacttattaa tagttagaaa tggggagtaa aaatggttcg tacaaaagta
     4621 ggtataactt taactgaaga tactttgaaa agacttgaag aaattgcaga acaaatgggc
     4681 ttaagtaagt cccaggctat ttctatgttg attaataacg agtatttaag taagtatcaa
     4741 agcgaagata aaatatttaa ggcataaaaa aagtcttaat caattagacc aagacatttg
     4801 atagtgttat attaataagc aaataaaaag aagtcgctca ctccct
//
