LOCUS       NZ_CP068075             2216 bp    DNA     circular CON 06-FEB-2024
DEFINITION  Staphylococcus condimenti strain FDAARGOS_1148 plasmid unnamed2,
            complete sequence.
ACCESSION   NZ_CP068075
VERSION     NZ_CP068075.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16357317
            Assembly: GCF_016724565.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus condimenti
  ORGANISM  Staphylococcus condimenti
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2216)
  AUTHORS   Sproer,C., Gronow,S., Severitt,S., Schroder,I., Tallon,L.,
            Sadzewicz,L., Zhao,X., Boylan,J., Ott,S., Bowen,H., Vavikolanu,K.,
            Mehta,A., Aluvathingal,J., Nadendla,S., Lowell,S., Myers,T., Yan,Y.
            and Sichtig,H.
  TITLE     FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS):
            Supporting development and validation of Infectious Disease Dx tests
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2216)
  AUTHORS   Sproer,C., Gronow,S., Severitt,S., Schroder,I., Tallon,L.,
            Sadzewicz,L., Zhao,X., Boylan,J., Ott,S., Bowen,H., Vavikolanu,K.,
            Mehta,A., Aluvathingal,J., Nadendla,S., Lowell,S., Myers,T., Yan,Y.
            and Sichtig,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JAN-2021) Institute for Genome Sciences, University of
            Maryland School of Medicine, BioPark II, 801 W. Baltimore St., Suite
            619, Baltimore, MD 21201, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: SMRT v. 8.0.0, HGAP v. 4, SPAdes v. 3.11.1
            Genome Coverage                   :: 1434.04x
            Sequencing Technology             :: Pacbio; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/06/2024 04:22:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,595
            CDSs (total)                      :: 2,512
            Genes (coding)                    :: 2,479
            CDSs (with protein)               :: 2,479
            Genes (RNA)                       :: 83
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 14 of 33
            Pseudo Genes (incomplete)         :: 15 of 33
            Pseudo Genes (internal stop)      :: 10 of 33
            Pseudo Genes (multiple problems)  :: 6 of 33
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP068075.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2216
                     /organism="Staphylococcus condimenti"
                     /mol_type="genomic DNA"
                     /strain="FDAARGOS_1148"
                     /culture_collection="DSM:11674"
                     /type_material="type strain of Staphylococcus condimenti"
                     /db_xref="taxon:70255"
                     /plasmid="unnamed2"
                     /geo_loc_name="Germany: Braunschweig"
                     /collected_by="DSMZ"
     gene            complement(537..1541)
                     /locus_tag="I6J05_RS12885"
                     /old_locus_tag="I6J05_12885"
     CDS             complement(537..1541)
                     /locus_tag="I6J05_RS12885"
                     /old_locus_tag="I6J05_12885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020368559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_078098897.1"
                     /translation="MHSYTTRCIDENQDNETLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNVLEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQRVI
                     EEVVKEKPKARWLFLTLSTRNAIDGDHLEQSLKHMSKAFNKLKMYTKVKKNLIGFLRST
                     EVTVNKNDGSYNQHMHVLLCVESAYFKKQGQYIKQSEWVDLWQKALQVDYRPVANIKAI
                     KPNQKGDKDIQAAIKETSKYSVKSSDFLTDDDERNQEIVNDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDAEDGNLINTSDEDKTTDEEEKAHSITAIWNFEKQNYYLKDLKR"
                     /name="protein rep"
     gene            1818..2141
                     /gene="qacG"
                     /locus_tag="I6J05_RS12890"
                     /old_locus_tag="I6J05_12890"
     ARG             1819..2138
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="quaternary ammonium compound efflux SMR
                     transporter QacG"
                     /tool="amrfinderplus"
                     /drug_class="QUATERNARY AMMONIUM"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          complement(538..1541)
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.532"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cttaatagct cacgctatgc cgacattcgt ctgcaagttt agttaagggt tcttctcaac
       61 atcaataaat tttctcggca taaatgcatg ctttaattat gttataatta agcaaattga
      121 gtaggaaaaa tatagtactc aaaaattaaa ttaattagct tttctattat ttgtgttatt
      181 gctaagtaca acttttttat tgttgcactt agcatttttt atttttaaat tttcaaagat
      241 accaaatttt aaataccttt attttgaatt ctaagggggc attttaaaga tttaagggta
      301 aatcatatag ttttatacct aaaaacctac acaagctttt aaaacgcaaa tatgagccaa
      361 ataaatatat tctaattcca caaacaaaaa tttgagcaaa accagtgact aattttttag
      421 acactgccca gttacatgca aatttaaaaa ttggcataaa aactggtcaa ccatacaggt
      481 tgaacgatat agttcccgca ggggcaaaaa agcataaaaa aacgctagct tttaagctaa
      541 cgtttcaaat cttttaagta ataattttgt ttttcaaaat tccaaattgc cgtaattgag
      601 tgtgcttttt cttcttcgtc tgttgtttta tcttcgtcac ttgtattaat caaattgcca
      661 tcttcggcat cgtctaaatt taaaatttta tgtttttgtt taagcaatcc accataactc
      721 aacatacgtt ttcggtataa acctttttcc aaatcattca cgatttcttg atttctttca
      781 tcatcatcag ttaaaaaatc agatgactta accgagtatt ttgaagtctc tttgatagct
      841 gcttgaatat ctttatcgcc tttttgattc ggtttgatcg ctttgatatt tgcgactggt
      901 cgataatcaa cttgcaatgc tttttgccat aaatcgaccc actcactttg ttttatatac
      961 tgaccttgct ttttaaaata cgcactttca acacataata aaacatgcat atgttgatta
     1021 taactaccgt catttttatt aaccgttact tcggttgaac gtaaaaatcc aattaaattc
     1081 tttttaactt ttgtatacat ttttaattta ttaaaagcct tagacatatg ttttaaactt
     1141 tgttctaaat ggtcaccatc tattgcattt cgtgttgata atgtgagaaa taaccaacgt
     1201 gctttcggct tttcttttac cacttcttca atcactcttt gagcttgata actatttttc
     1261 atagcacgcc tccaattaca aactggacat aattttgact tacaaaacca tgtcttatgt
     1321 aattttaaat aaccttcatc agttggcttg aactctaaga cgttaccaca ttgttttaca
     1381 ttaaaagctt ttttaatttt taagatttct agtatatctg cataacttac attatcaatt
     1441 ttcttctctc tccatgggcg ttgtttccca cttttcgtca tatcttttaa tgtttcgtta
     1501 tcttgatttt cgtctataca tctagtagta taagaatgca tataaaaacc tccagtattt
     1561 gattttatct cgacaattta atcttattac tggagttttt ttatgtcaaa ttttattttc
     1621 cacgttaaaa atagctaaaa acgctgtaat atcaaaattc aaacgacttt ttatatcttt
     1681 gaattatttc tatatagtat caagacaaga agaaactcgt tttcaactcg ttttaaaata
     1741 caaatcttaa aaatttttct ttcacttaat ataagttaaa atataagcta tcaaatagaa
     1801 attaaaggag aagcttaatg cattatttat atttatttat ctcaattgca acagaaataa
     1861 tcggaactag ttttttaaaa acatcagagg gtttcacaaa gttatggcca acattaggta
     1921 cactactttc gtttggaatt tgcttttatt ttttaagttt aacaataaaa tttttgccct
     1981 taaatataac ttatgcaaca tgggcaggtc taggattagt attaacaaca ataatctcag
     2041 ttatcgtttt taaagaaaat gttaatttaa ttagtataat ttctattggc ttaattgtta
     2101 taggtgtagt gctcttaaat gtatttggag aaagccattg attattttat tccaattgct
     2161 ttattgacgt tgagcctcgg aacccttaac aatcccaaaa cttgtcgaat gatcgg
//
