LOCUS       NZ_CP068021             3830 bp    DNA     circular CON 03-JUN-2024
DEFINITION  Salmonella enterica strain 1722 plasmid unnamed3, complete sequence.
ACCESSION   NZ_CP068021
VERSION     NZ_CP068021.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17208412
            Assembly: GCF_022870685.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3830)
  AUTHORS   Zhu,X.
  TITLE     Whole genome of Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3830)
  AUTHORS   Zhu,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2021) Microbiology Laboratory, Hospital, 60 Wuning
            West Road, Dongyang, Zhejiang 322100, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. 0.4.5
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 400.0x
            Sequencing Technology :: Oxford Nanopore GridION; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022870685.1-RS_2024_06_02
            Annotation Date                   :: 06/02/2024 04:28:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,201
            CDSs (total)                      :: 5,078
            Genes (coding)                    :: 4,943
            CDSs (with protein)               :: 4,943
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 38 of 135
            Pseudo Genes (incomplete)         :: 112 of 135
            Pseudo Genes (internal stop)      :: 17 of 135
            Pseudo Genes (multiple problems)  :: 29 of 135
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP068021.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3830
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="1722"
                     /isolation_source="Stool from an infant"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="unnamed3"
                     /geo_loc_name="China: dongyang,zhejiang"
                     /collection_date="2020-11-03"
     gene            complement(join(2000..3830,1..74))
                     /locus_tag="JI996_RS25930"
                     /old_locus_tag="JI996_25770"
     CDS             complement(join(2000..3830,1..74))
                     /locus_tag="JI996_RS25930"
                     /old_locus_tag="JI996_25770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003839290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="WP_052895204.1"
                     /translation="MSWAYRISMQMKLFIALFPLLLALVWFAGSGIVSRINTEQQMNTI
                     GQLTTLARSAGDVVHQLQSERGMSAGFIGARGQKFRDDLAAQRQLTDKVLATFKRLLTD
                     TNKDLLQGNIAAPLKTFNESIQFLDSTRTAISELTIDSPKASQFYTQTISDVLKFVGGM
                     GHLSTSGSMVNELAAYYSLLNLKEQAGVERALLSNIFSMDRFDDGQFSMFSDVVGQQDA
                     WLTAARSFSTPVQAAELDKSLQSAEATRALELRETAFNKAAEGGFGVNPTDWFNLQTQR
                     IETLQKVENRAVDALQEHAALLAHNARVDWQSFLVISLVALLIAIAFAVMVARSIQQQL
                     NGTLKTIAEMDGDLTRRLDVPGSDELSALNRAYNQAIENIQHIVQEIKSGAVVLRSASS
                     DIAAGNQDLAQRTDEQAASIVETAASMEQISTAITQTADNASEAERLIHSMERDVLEAN
                     RVSNEASQSMAEIRSSSEQISQIVASIDEISFQTNLLALNAAVEAARAGELGKGFAVVA
                     TEVRNLSQRCAREASQIRELINQNMDKIGEGVARVTASGTALKAAAENTGRMKQYVSDI
                     ARAANEQSLGVSQVHQALNQLEQVTQQNAALVSQAASASQMLDGQSEAMSTLVDRFIV"
                     /name="methyl-accepting chemotaxis protein"
     gene            complement(380..529)
                     /locus_tag="JI996_RS26075"
     CDS             complement(380..529)
                     /locus_tag="JI996_RS26075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001333247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_077464408.1"
                     /translation="MHEPPVQSDCCAFSGNYRLESNPERHEKSPLAAATGKQDVREMYR
                     EFLK"
                     /name="replication initiation protein"
     gene            1208..1474
                     /locus_tag="JI996_RS25935"
                     /old_locus_tag="JI996_25775"
     CDS             1208..1474
                     /locus_tag="JI996_RS25935"
                     /old_locus_tag="JI996_25775"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_213069224.1"
                     /translation="MKRSQLTLIDGCFMFGFSPGELMNLCPDERLLFVRMISAMLRRSG
                     GDAGAVMFEAYRHIVSDTNQARRSCMLDLLESVRHDYVHGGYT"
                     /name="hypothetical protein"
     gene            complement(1522..1710)
                     /locus_tag="JI996_RS25940"
                     /old_locus_tag="JI996_25780"
     CDS             complement(1522..1710)
                     /locus_tag="JI996_RS25940"
                     /old_locus_tag="JI996_25780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165998.1"
                     /translation="MTKQESAALNMAKFIRAQSLLLLEKLDVLDLDDEAADCERMHEQA
                     EALYQKLSARFGIQDGE"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          892..1064
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.379"
                     /coverage="100.0"
                     /evalue="9.47e-61"
     Typing          complement(371..967)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.211"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 accaaggcaa gcagtagcgg gaataatgca ataaacaact tcatttgcat tgaaatacga
       61 taagcccatg acatatcgat actttcctta ctttcttgag ggatcgcagg agtatcggta
      121 gatacatgca taaactttat agtttattgt tgggggaacg ggcaccacat tcggcagtgg
      181 cgctggtagc aatccataaa ggatcttctt gagatccttt gacgatcgtc gtaatctctt
      241 gctctgtaaa cgaaaaaacc acccttgcag gtggtttttc gaaggttaga taatcctggc
      301 agattctcta accgtggtaa cagtcttgtg cgagacatgt caccaaattt gtccttctag
      361 tgtagcctca gtcaggccac tacttcaaga actctcgata catctctcgc acatcctgtt
      421 taccagtggc cgctgccagt ggcgattttt cgtgtctttc cgggttggac tcaagacgat
      481 agttaccgga aaaggcgcag cagtcggact gaacgggggg ttcgtgcata cagtccagct
      541 tggagcgaac tgccttcccg gaactgagtg tcaggcgtgg aatgagataa acgcggccat
      601 aacagcggaa tgacaccggt aaaccgaaag gcaggaacag gagagcgcac gagggagcta
      661 ccagggggaa acgcctggga tctttatagt cctgtcgggt ttcgccgcca ctgatttgag
      721 cgtcagattt cgtgatgctt gtcagggggg cggagcctat ggaaaaacgg cttcgccgcg
      781 gccttaccgt ttccctgtta agtttcttcc tggcatctcc caggaaattt ccgccccatt
      841 cgtaatcccg caccgctcgc cgcagccgaa cgaccgagcg cagcgagtca gtgagcgagg
      901 aagcggaata tctcctgtct catatattcc gcttacgctc tgctgctgca ttttcctcct
      961 gccacatgaa gcacttcact gattcccgca cccgtgccta cataataagc cagtatacac
     1021 tccgctagcg ctacgtgact ggttcagggc tgcgccccga cacccgctaa aagcactgac
     1081 gcgcctgcgg cttgcccaac cccgcgccgt ccgggaaaga atttcccgat cgacccgacg
     1141 tttctgttta cctgtgatgt taacgtttgg atctttttcc cgggtttacc tattttaatg
     1201 aagcgtaatg aagcgttcac agctgacgtt aatagatggg tgcttcatgt ttggtttttc
     1261 accaggagaa cttatgaacc tttgccccga tgaacgtctg ctctttgtgc ggatgatttc
     1321 cgctatgctt cgccgttcgg gcggtgatgc gggtgctgtt atgtttgagg cgtatcgcca
     1381 tattgtgtcc gataccaatc aagctcgtcg ttcctgcatg ctcgacctgc tcgaaagcgt
     1441 caggcatgac tatgtacacg gtggatatac atagttgccc tggatacgct tttcgtctaa
     1501 gtgagcgttc ttttcgtctc tttattcgcc gtcctgtata ccgaagcgtg cgctcagctt
     1561 ctgataaagc gcttctgcct gttcgtgcat tcgctcacag tcggctgcct cgtcatcaag
     1621 atcgagcacg tcgagttttt cgagcagcag cagcgactgc gcccggataa attttgccat
     1681 gttcagtgcg gctgattcct gttttgtcat acggcttttt cccggtttta tggtgatcgc
     1741 agactgaaat cttacttcat tcacttgagt gcatagccat gcaggtacgc agaaatcatc
     1801 aggggcgttt tttctcgata tgggcacaga aaggtgtatg tttcaggtcg gagtcctcag
     1861 aaacgctctc agagcctctc aggcggtgca cgcaacggga gttatggtaa atcctagtta
     1921 tttgcaggca taaaaaagcc gccttttagg cggttttttc tgattgtaag ttatcaagac
     1981 cggatgctga acggcagtat cagacaataa agcgatcgac cagcgtggac atcgcttcag
     2041 actggccgtc cagcatctgg ctggcgctcg ccgcctgaga gaccagcgct gcgttttgct
     2101 gagtgacctg ctccagctga ttcagtgcct gatgcacctg cgacacgcca agcgactgct
     2161 cattcgccgc acgggcaata tcgctcacgt actgtttcat ccgcccggta ttttccgccg
     2221 ctgctttcag cgcggtgccg gacgcggtga ctcgtgctac cccttcgcca atcttatcca
     2281 tattctggtt aatcagctca cggatctgac tggcctctcg tgcacagcgc tgggaaaggt
     2341 tacgcacctc cgtcgccact accgcaaagc ctttgccaag ctcaccggca cgtgccgctt
     2401 caacggcggc gttaagcgcc agcaagttgg tctggaaaga aatctcatca attgacgcaa
     2461 caatctggga aatctgctcg ctggaagaac gaatttccgc catgctctga ctggcctcgt
     2521 tagagacgcg attagcttcc agtacgtccc gctccatcga atgtatcaga cgctccgcct
     2581 cgctggcgtt atcggcggtc tgggtgatcg cagtagaaat ctgctccatg ctggcggccg
     2641 tttccacaat cgatgccgcc tgttcatccg tacgctgggc cagatcctga ttaccggcag
     2701 cgatatcact actggcgcta cgcaacacca ccgcaccgga cttaatttct tgcacgatat
     2761 gctgaatatt ctcaatcgct tggttatagg cacggttcag ggctgagagc tcgtcgctgc
     2821 cggggacgtc aagacgacgt gtcaggtcgc cgtccatctc tgcgatggtt ttcagcgtac
     2881 cgttcagttg ctgctggata ctgcgtgcca ccatcaccgc aaaggcgata gcaatcagta
     2941 gggcaaccag gctgattacc aggaaggact gccagtcgac acgggcattg tgggcaagca
     3001 gcgcagcatg ttcctgcaag gcatccaccg cgcgattttc caccttttgc agcgtttcaa
     3061 tacgctgggt ctgaaggtta aaccagtcag tcgggttgac tccaaatccg ccttcggcgg
     3121 ctttattaaa agccgtctcc cgcagttcaa gagcacgagt tgcttcagcg gactgaagag
     3181 atttgtccag ctcagccgcc tgcacaggtg tgctaaagct gcgagctgcc gtcagccagg
     3241 catcctgctg gcctaccaca tcgctaaaca tgctgaactg gccgtcgtca aagcgatcca
     3301 tcgagaagat attggacagc agcgcacgtt ctacaccagc ctgctccttc aaattcaaga
     3361 gactataata agccgccagt tcgttcacca tcgagcctga ggtgcttaaa tgccccatcc
     3421 cgccgacaaa cttcagcacg tcagagatgg tttgggtata gaactgactc gcttttggtg
     3481 aatcgatagt taattcgctg atggcggtac gggttgagtc gagaaactga atactttcat
     3541 taaacgtttt caggggggcg gcaatatttc cctggagtaa atccttattc gtatcggtca
     3601 gcaaccgctt aaatgttgcc agcaccttgt cggttaactg ccgctgggca gctaagtcat
     3661 cgcgaaactt ttggccgcgc gcgccgataa atccagcgct cattccacgt tcgctctgga
     3721 gttgatgcac cacatcaccc gcgctgcggg cgagcgtggt gagctgtcca atggtgttca
     3781 tctgctgttc ggtattgata cggctgacaa tacccgaacc ggcgaaccag
//
