LOCUS       NZ_CP068020             3988 bp    DNA     circular CON 03-JUN-2024
DEFINITION  Salmonella enterica strain 1722 plasmid unnamed2, complete sequence.
ACCESSION   NZ_CP068020
VERSION     NZ_CP068020.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17208412
            Assembly: GCF_022870685.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3988)
  AUTHORS   Zhu,X.
  TITLE     Whole genome of Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3988)
  AUTHORS   Zhu,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JAN-2021) Microbiology Laboratory, Hospital, 60 Wuning
            West Road, Dongyang, Zhejiang 322100, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. 0.4.5
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 400.0x
            Sequencing Technology :: Oxford Nanopore GridION; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022870685.1-RS_2024_06_02
            Annotation Date                   :: 06/02/2024 04:28:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,201
            CDSs (total)                      :: 5,078
            Genes (coding)                    :: 4,943
            CDSs (with protein)               :: 4,943
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 135
            CDSs (without protein)            :: 135
            Pseudo Genes (ambiguous residues) :: 0 of 135
            Pseudo Genes (frameshifted)       :: 38 of 135
            Pseudo Genes (incomplete)         :: 112 of 135
            Pseudo Genes (internal stop)      :: 17 of 135
            Pseudo Genes (multiple problems)  :: 29 of 135
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP068020.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3988
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="1722"
                     /isolation_source="Stool from an infant"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="unnamed2"
                     /geo_loc_name="China: dongyang,zhejiang"
                     /collection_date="2020-11-03"
     gene            complement(join(3740..3988,1..132))
                     /locus_tag="JI996_RS25900"
                     /old_locus_tag="JI996_25740"
     CDS             complement(join(3740..3988,1..132))
                     /locus_tag="JI996_RS25900"
                     /old_locus_tag="JI996_25740"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032201349.1"
                     /translation="MKKITSLLLLGVFGLTGCAQNVSPQVAAQAQAPIYCENKQQCDAY
                     WTKAKAWIAMNSGWKIQMADETVIATYSPIGNSAILGYQVVKTPIGGERHEIVVQTACA
                     NMFGCIPNAIEQTAKLKNYIKN"
                     /name="hypothetical protein"
     gene            complement(476..559)
                     /locus_tag="JI996_RS26070"
     CDS             complement(476..559)
                     /locus_tag="JI996_RS26070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_072050248.1"
                     /translation="MHEPPVQSDRCALSGNYLLESNPDRHD"
                     /name="replication initiation protein"
     gene            1196..1516
                     /locus_tag="JI996_RS25905"
                     /old_locus_tag="JI996_25745"
     CDS             1196..1516
                     /locus_tag="JI996_RS25905"
                     /old_locus_tag="JI996_25745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_045265547.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGRLPSI
                     SPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAVLETGGDD
                     DR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1725..>2153
                     /locus_tag="JI996_RS25910"
                     /pseudo=""
     CDS             1725..>2153
                     /locus_tag="JI996_RS25910"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            2194..2679
                     /locus_tag="JI996_RS25915"
                     /old_locus_tag="JI996_25755"
     CDS             2194..2679
                     /locus_tag="JI996_RS25915"
                     /old_locus_tag="JI996_25755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001749519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_013631087.1"
                     /translation="MSSLLALAKDLEQQSKAQQQSTGEMLKAAFSEHEQSVKAELSASA
                     KRISDAISAHEQGMTAAMQSNRLSVLRMVGRTWLTITLVSVLLIATSGSILWWQGQQIT
                     GNYQTIRAQERTQAMLSEKNHGVQLSLCGEKKLSCVKVNPKAGAYGEEGNWMVLERK"
                     /name="MbeB family mobilization protein"
     gene            2683..2895
                     /locus_tag="JI996_RS25920"
                     /old_locus_tag="JI996_25760"
     CDS             2683..2895
                     /locus_tag="JI996_RS25920"
                     /old_locus_tag="JI996_25760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137423.1"
                     /translation="MTELEKQLLTALEQLHQDYSQRLDEWESAFAEWQKMSGLMQRENA
                     ALNERVTRLSQQVANLSRQLQRLSQ"
                     /name="MbeD family mobilization/exclusion protein"
     gene            3475..3684
                     /locus_tag="JI996_RS25925"
                     /old_locus_tag="JI996_25765"
     CDS             3475..3684
                     /locus_tag="JI996_RS25925"
                     /old_locus_tag="JI996_25765"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_058679818.1"
                     /translation="MTKFEAFKDQITNAAKASFPEWVTFEYENDFPGYNESFVYESVCA
                     IKKTGELEVRNNADRYFSVKFISV"
                     /name="hypothetical protein"
     Typing          910..1082
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="84.659"
                     /coverage="100.0"
                     /evalue="9.74e-41"
     Typing          complement(451..963)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.829"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          1507..3011
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.02"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 agcatcacat tgctgcttat tttcgcaata tataggcgct tgagcttgag ctgctacttg
       61 tgggctgaca ttttgagcgc agccggtcaa gccaaagact ccgagtaata atagagaagt
      121 tatttttttc attttaagcc tctgttgttt attgtttttt atgtgctgat tttaacatta
      181 tctatacgta ggaaagaaga aagtaggtgt ggttaggttg caaaagaaaa atgatcttct
      241 tgagatcctt ttgagcagcg cgtaatctcc tgctctgtaa acgaaaaaac cacctgggga
      301 ggtggttttt cgaaggttca gtaagttggg gaacttctga accgtggtaa cagtcttgtg
      361 cgagacgtgt cacccaatct gtccttccag tgtagccgta gtaagggcac cacttcaaga
      421 actctcacaa tatctctcgc acatcctgtt taccagtggc cgttgccaat ggcgattagt
      481 cgtgtctatc cgggttggac tcaagaagat agttaccgga caaggcgcag cggtcggact
      541 gaacgggggg ttcgtgcata cagtccagct tggagcgaac tgcctacccg gaactgagtg
      601 tcaggcgtgg aatgagataa acgcggccat aacagcggaa tgacaccggt aaaccgaaag
      661 gcaggaacag gagagcgcac gagggagcca ccagggggaa acgcctggta tctttatagt
      721 cctgtcgggt ttcgccacca ctgatttgag cgtcagattt cgtgatgttt gtcagggggg
      781 cggagcctat ggaaaaacgg cagcgccgca tcctttttct gccccgtttg tcatgccata
      841 tgcttttgct cttctccgtg tgcaggtaac gcccgccgca gccgaacggc aggagcgtcc
      901 gcgactgagt gagcgaggag gcgtcatatc ctctgaactt ccattttctg ccttacgccc
      961 gcagctgcat tttcctctgt cacatgaagc actttcctga ttaccgcact catgccaaca
     1021 taataagcca gtatacactc cgctagcgct acgtgactgg ttcagggctg cgccccgaaa
     1081 cccgctaaaa gcgactgacg cgcctgcggc ttgtccaaca ccgtgccgcc cgggaaaaat
     1141 ttcccgcccg tcccggtgtt atcaggaggc tactctggca gataaacgca acaagatgct
     1201 cacgatgtgg gtgacggaag acgaacaccg gcggctgctc gagcggtgcg acggcaagca
     1261 gctggcggcg tggatgcgtc agacctgcct cgatgagaag ccggcacgtg ccggcagact
     1321 gccgtcgata tcgccggcgc tgctgcgcca gcttgccggt atgggtaaca acctgaacca
     1381 gatcgcccgg aaagtgaatg ccggtggtgc cggtcatgat cgggtgcaga tcgtggccgc
     1441 cctgatggca atcgacgcgg gactggagcg gctgcggcat gcggtgctgg aaacaggggg
     1501 ggatgatgat cgttaaattc catccccggg ggcgtggtgg tggtgccggt ccggtggatt
     1561 acctgctggg aaaagaccgg cagcgcgagg gggcgaccgt gctgcaggga aagccggagg
     1621 aagtccggga gcttatcgat gcctcgccgt atgcgaaaaa gtacacctcc ggtgtgctgt
     1681 cgttcgcgga ggctgaacta ccgcccgggc agcgggagca gatcatggcc agctttgagc
     1741 gggttctgat gcccgggctc gataaagacc agtacagcat tctgtgggtg gagcacaccg
     1801 acaaggggcg gctggagctg aatttcctga tccccaacac tgaactgctg accgggaaac
     1861 gcctgcagcc gtactacgat cgcgccgacc ggccgcgcat cgatgcctgg cagaccgtgg
     1921 tgaacggcag actggggctg catgatccaa acgccccgga gaaccggcgg ttactggtca
     1981 cgccgtccgc actgccggaa acgaagctgg aagccgctca ggcgattaca cggggtttac
     2041 tggccttagc ctcatccggg gagctcaaaa cgcgcgagga cgtcacaggg gcgctcatag
     2101 cggcaggttt tgaggtggtc cgcaccacaa aaaacagtat cagcattgcc gacccggacg
     2161 gggggcgaaa catccgactg aagggagcca tttatgagca gtcttttagc gctagcgaag
     2221 gacttggagc agcaatcgaa agcgcagcag cagagtaccg gcgagatgct gaaagccgca
     2281 ttcagcgagc acgagcagtc tgtaaaagcg gaactgagcg caagcgcgaa gagaatcagc
     2341 gacgccatca gcgcccacga gcagggtatg accgcggcga tgcagtcgaa ccggctgagc
     2401 gtgttgcgta tggttggccg gacgtggctg accatcaccc tggtctcggt actgctgatc
     2461 gccacgagcg ggagcattct gtggtggcag gggcagcaga tcaccgggaa ttaccagact
     2521 atccgggcgc aggagcggac gcaggccatg ctgtcggaga agaaccacgg cgtgcagctg
     2581 tcgctctgcg gggagaagaa actgtcctgc gtcaaagtga acccgaaagc gggagcttac
     2641 ggggaggaag ggaactggat ggtactggag aggaaatagc ccatgacgga actggaaaaa
     2701 cagttgctga ccgcattaga gcagttacat caggactact cgcaaaggct ggacgagtgg
     2761 gagagcgcct tcgcggaatg gcagaagatg tctggtctta tgcaacggga gaacgcggcg
     2821 ctgaacgagc gcgtcacgcg cttgagtcag caggtggcga acttgagcag gcagttacag
     2881 cgtttgagcc agtagtgcag cggcatgaaa tggcggtggc cgccgaacgg gcatacgagc
     2941 agaaacagca tgaaaaagag ctggctgaaa cccgttcccg gcagcggagc tataacggtc
     3001 cgacgctggg ctgactgcgc gcatccagtg acaaacccca agaagaaggg ctcataaatt
     3061 tcccgctaaa tacggtcgtg atgtttccat cacagcgtat acaacggagg gattatgaga
     3121 ctgtttaacg tgattgagac ggtgctgaac tgcctgtaca tggcgctgga gatctgggac
     3181 tggctggaga agcattttcc tgtttttaag gcgttcatcc ggattctggc ctgaaatcag
     3241 accgtatgca tctggctgca tgaccatgca gccgggtaaa atttatctgt cacgaacggg
     3301 gcggtgtatc gggtggtttg ttgccggttt tacctgactg ccgccccgtt tgtggcgaac
     3361 ctgtccggag cggtgcgggc aacggatgtt atggtaaatt ggtgatctca tcatgctaat
     3421 tctttctgtg gtaaaatctc tctgagccac ccggttctta cataggatat atccatgacc
     3481 aagtttgaag ctttcaaaga tcagataacg aatgccgcta aagcatcttt tcctgagtgg
     3541 gtaacgtttg aatatgaaaa tgattttcct ggatataatg aatcctttgt ttatgaatcc
     3601 gtctgtgcta ttaaaaaaac gggtgagtta gaagtaagaa ataatgcgga cagatatttt
     3661 agtgtgaagt ttatatcggt ctagcatgtt tgattgtttc ggaaagcccg ctaaacgtgg
     3721 gctttcatga atataatcat cagtttttta tgtagttttt taattttgct gtttgttcga
     3781 tggcattagg aatgcagcca aacatattgg cgcaggctgt ttgaacgaca atttcgtgcc
     3841 tttcccctcc aattggagtt tttaccactt gatatcctaa aattgcacta ttaccaatag
     3901 gtgagtacgt tgcaataacc gtttcatccg ccatttgtat tttccagcct gagttcattg
     3961 ctatccaagc ttttgcttta gtccagta
//
