LOCUS       NZ_CP067415             2926 bp    DNA     circular CON 03-DEC-2023
DEFINITION  Raoultella ornithinolytica strain TET32 plasmid pTET32B, complete
            sequence.
ACCESSION   NZ_CP067415
VERSION     NZ_CP067415.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17255686
            Assembly: GCF_016653655.1
KEYWORDS    RefSeq.
SOURCE      Raoultella ornithinolytica
  ORGANISM  Raoultella ornithinolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Raoultella.
REFERENCE   1  (bases 1 to 2926)
  AUTHORS   Cao,G. and Zhong,C.
  TITLE     Complete genome of TET32
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2926)
  AUTHORS   Cao,G. and Zhong,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JAN-2021) Shandong Medicinal Biotechnology Center,
            Shandong First Medical University, 6699 Qingdao Road, Jinan 250117,
            China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SOAPdenovo v. 10-2020
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 694.0x
            Sequencing Technology             :: Oxford Nanopore GridION; BGISEQ
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/03/2023 01:50:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,130
            CDSs (total)                      :: 5,008
            Genes (coding)                    :: 4,918
            CDSs (with protein)               :: 4,918
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 90
            CDSs (without protein)            :: 90
            Pseudo Genes (ambiguous residues) :: 0 of 90
            Pseudo Genes (frameshifted)       :: 39 of 90
            Pseudo Genes (incomplete)         :: 59 of 90
            Pseudo Genes (internal stop)      :: 21 of 90
            Pseudo Genes (multiple problems)  :: 25 of 90
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP067415.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2926
                     /organism="Raoultella ornithinolytica"
                     /mol_type="genomic DNA"
                     /strain="TET32"
                     /isolation_source="water"
                     /db_xref="taxon:54291"
                     /plasmid="pTET32B"
                     /geo_loc_name="China:Jinan"
                     /collection_date="2018-05"
     gene            complement(5..508)
                     /locus_tag="JJL43_RS25510"
                     /old_locus_tag="JJL43_25510"
     CDS             complement(5..508)
                     /locus_tag="JJL43_RS25510"
                     /old_locus_tag="JJL43_25510"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_159051630.1"
                     /translation="MKIAAALGVCHFLVYKTTTPECWRRRLRMILAKKRPFPGKGHARM
                     TLWVQRLHINYKIASAFTPERGCTTELHQKYIKITSLLRQIAGVQQNYIKSTSLLRHFY
                     IIFTSDLTSELFVHPPPLPGPPARAENGFSGCAGNASRPRNKLRIRSPLSGWFVVAFRA
                     FIGF"
                     /name="hypothetical protein"
     gene            complement(646..837)
                     /locus_tag="JJL43_RS25515"
                     /old_locus_tag="JJL43_25515"
     CDS             complement(646..837)
                     /locus_tag="JJL43_RS25515"
                     /old_locus_tag="JJL43_25515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041614.1"
                     /translation="MNKQQKTAVNMAKFIQDQSLLLLDRLNELDLDHEADFCEKLHEDA
                     ERLYRSLSARLNEQQDGA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1613..2287)
                     /locus_tag="JJL43_RS25520"
                     /old_locus_tag="JJL43_25520"
     CDS             complement(1613..2287)
                     /locus_tag="JJL43_RS25520"
                     /old_locus_tag="JJL43_25520"
                     /inference="COORDINATES: protein motif:HMM:NF025107.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_065806389.1"
                     /translation="MIPNWAPMFSWWVHNGLIRKFNWRNDEIGKPSAKVAALMIYIAIT
                     MKCAEEVGIQEVKITYTRLSEMTGISRQLIREGTAILVKLDMIDVTRIGRNNTYKLISN
                     KERSGWCKIPVRAITSEGGHAITPFEDLKLRRKVELHALKIFIYLASVRDNYTEYSLAS
                     YQTISSAVGITEKDIQRALALLSLVGLITRISSEKADDTKKNQPNRYYLAGYKSFVKRS
                     DW"
                     /name="helix-turn-helix domain-containing protein"
     Typing          713..1318
                     /name="rep_cluster_2327"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.0"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 gcggctaaaa tccgatgaac gccctgaaag ccaccacgaa ccaccccgat aacggtgaac
       61 ggatgcgcaa tttattgcgt ggccgtgagg cgttgccggc acagccggaa aaaccatttt
      121 cagcacgtgc aggaggccca ggaagagggg gcggatgtac gaatagttca gaggtcagat
      181 ctgacgtaaa aatgatgtaa aagtgacgta aaagtgatgt acttttgatg taattctgtt
      241 gtacacccgc gatctgacgt aaaagtgatg taattttgat gtacttttga tgtaattctg
      301 ttgtacaccc gcgttctggg gtaaaagcag atgcaatttt gtagtttatg tgtagtcgct
      361 gaacccatag ggtcatacga gcatgaccct ttcccggaaa aggacgcttt ttagccagaa
      421 tcatccttaa cctgcggcgc cagcactcgg gagtggtcgt tttatatact aaaaaatgac
      481 atacacctaa cgcagctgcg attttcatcg caacttcatg aaaaataaat aaaaaataaa
      541 aaatacaggg attctgggta ttaccggggt aataatgtta agcgctaaga caatgaaaat
      601 taaggcgatg ccggtattac tccggtaata ctcagaacgg agacattacg caccgtcctg
      661 ctgctcattc aggcgcgctg acaggcttcg gtaaaggcgt tccgcatcct catggagttt
      721 ctcgcagaaa tcagcctcat gatccagatc cagctcatta agcctgtcca gaagaagcag
      781 ggactgatcc tggatgaatt tagccatgtt aacggcagtc ttttgttgtt tgttcatgaa
      841 ggccccggcg cgaaagtgct tactgtacgt tctgatggtt ttccgcttcc tcgctcattc
      901 gctcactccg ttcggtcatg agtctgcggc gagcggaggg aagataagca gataacgtaa
      961 cggtaagcat aacgaaagct aaggacaagg gcgaaaaggc cacgccccga gaggcgtttt
     1021 tccataggct ccgcccccct gacaagcatc acgaaatctg acgctcaaat cagtggtggc
     1081 gaaacccgac aggacttaaa gataccgggc gtttcccccc ggtggctccc tcttgcgctt
     1141 tcctgttccc gccctgcggt ttacgtgttg tggtggaagc cttacctaaa tcaccacgtc
     1201 ccgctccgtt tagacagttc gctccaagct gggctgtatg caagaacccc ccgttcagcc
     1261 cgactaccac gccctttccg gtaactatca cttgagtcca acccggagca gacacgacaa
     1321 aatcgccatt ggcggtagcc actggtaacg gggtaacaag atgcctatag attctttagt
     1381 cttgatgttt gagcctaaca acggctaaac ttaaagagaa atttggcggc agcggtcttg
     1441 ttcaccctgt taccacggtt aagcagttcc ccaactgact taaccttcga aaaaccgcct
     1501 tgcagggcgg ttttttcgtt aatgcgtaac gatactctta gccaaagagt aacgtcaaga
     1561 atgcattcct agcttagcgt taaacccatc cctgcctatg cacacctcgt attcaccagt
     1621 ccgatctttt aacaaagctt ttatatccag caagatagta gcgattaggc tgattctttt
     1681 tagtgtcatc agctttttca ctagaaatcc tagtgatcag acctaccaat gagaggagtg
     1741 ctaatgctct ctggatatct ttttctgtaa tgccaacagc actacttata gtctggtaag
     1801 aagctaacga atactctgtg tagttatcac gaacagaagc aagataaatg aatattttta
     1861 gcgcatgcag ctctactttt cgccttagct ttaaatcttc aaatggtgta atagcatggc
     1921 caccttcact agttattgct cttacaggta tcttgcacca tccactacgc tctttattgc
     1981 ttatcagttt ataggtgttg tttcgaccaa tccgcgtaac atcaatcata tccagcttaa
     2041 ctaaaatagc tgtaccttct cttatcagct gccgactaat ccctgtcatt tctgatagcc
     2101 gggtataggt tattttcact tcctgaatgc caacttcttc agcgcatttc atggtaattg
     2161 ctatgtaaat cataagagcg gcaacctttg ctgatggttt gccgatctca tcgttacgcc
     2221 aattaaattt ccgaataagt ccgttatgaa cccaccaaga gaacatcgga gcccaattag
     2281 ggatcatctc acttcctcca gccaataatg caaatagcaa cgaagcctgc caaaacagct
     2341 aatgacaaca ggaacggaac gaacccactg atgacagggg ctattgaggt aataaatgaa
     2401 ctgataacgg ttaaattttc cataaaaggt ccttctacga ggagttattt tcaaatttta
     2461 tctcgccaaa ggatttacat ctagagacaa tggttttaat tttttttgaa aataaaaaat
     2521 aaaaccaatt taatcaatta cttactttta gaatcattag tttttagcat ctaaaaatta
     2581 gttcataaga tgaaatttag cgcgataaaa gaccatttat cagtcaaaaa acgcccaaat
     2641 tgataaacta ttagttcaca aaaaacaaac ataaaccatt gataaatata tgttttttgt
     2701 aaggtgttgt tttataatac tattttttta tcgtcgagta agagccacag agtcgagcta
     2761 tttaccataa catccgttgc ccgcaccgcc tcagaggccc tcagggcgtt tctgaggcct
     2821 ccggcctgaa acacacacct ttctgtgccc atatcgagaa aaaacgcccc tgatgattct
     2881 ggcgcgactg catggctatg cacggacata cctggccggg atttta
//
