LOCUS       NZ_CP067385             1887 bp    DNA     circular CON 31-MAR-2024
DEFINITION  Klebsiella grimontii strain 5512.56 plasmid p5512.56-7, complete
            sequence.
ACCESSION   NZ_CP067385
VERSION     NZ_CP067385.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17215154
            Assembly: GCF_017863935.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella grimontii
  ORGANISM  Klebsiella grimontii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1887)
  AUTHORS   Campos-Madueno,E.I., Moser,A.I., Risch,M., Bodmer,T. and
            Endimiani,A.
  TITLE     Exploring the Global Spread of Klebsiella grimontii Isolates
            Possessing blaVIM-1 and mcr-9
  JOURNAL   Antimicrob Agents Chemother 65 (9), e0072421 (2021)
   PUBMED   34181480
REFERENCE   2  (bases 1 to 1887)
  AUTHORS   Campos-Madueno,E.I. and Endimiani,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2021) Institute for Infectious Diseases,
            University of Bern, Friedbuehlstrasse 51, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 262.28x
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_017863935.1-RS_2024_03_31
            Annotation Date                   :: 03/31/2024 06:04:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,919
            CDSs (total)                      :: 5,803
            Genes (coding)                    :: 5,650
            CDSs (with protein)               :: 5,650
            Genes (RNA)                       :: 116
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 153
            CDSs (without protein)            :: 153
            Pseudo Genes (ambiguous residues) :: 0 of 153
            Pseudo Genes (frameshifted)       :: 71 of 153
            Pseudo Genes (incomplete)         :: 96 of 153
            Pseudo Genes (internal stop)      :: 26 of 153
            Pseudo Genes (multiple problems)  :: 34 of 153
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP067385.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Klebsiella grimontii"
                     /mol_type="genomic DNA"
                     /strain="5512.56"
                     /isolation_source="Not defined"
                     /host="Homo sapiens"
                     /db_xref="taxon:2058152"
                     /plasmid="p5512.56-7"
                     /geo_loc_name="Switzerland"
                     /lat_lon="47.38824 N 8.34350 E"
                     /collection_date="2014-09"
                     /collected_by="Institute for Infectious Diseases,
                     University of Bern, Friedbuehlstrasse 51, 3001 Bern,
                     Switzerland"
     gene            complement(join(1728..1887,1..263))
                     /locus_tag="JJJ11_RS00565"
                     /old_locus_tag="JJJ11_00565"
     CDS             complement(join(1728..1887,1..263))
                     /locus_tag="JJJ11_RS00565"
                     /old_locus_tag="JJJ11_00565"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_097455296.1"
                     /translation="MKLKFIPIFLFIVTLQAAHSSGIDSTPPPQGKVIYTMNCTFVDDT
                     GKAIGKSQKYILRKGGDGREQMEITPQENAHVPPPIYIQKTSGAYTNGGFKTFYWNNTV
                     RMTVIRGDKTTVEIEFIDSPAISIAKATCDNPVYLP"
                     /name="hypothetical protein"
     gene            complement(851..1174)
                     /locus_tag="JJJ11_RS00570"
                     /old_locus_tag="JJJ11_00570"
     CDS             complement(851..1174)
                     /locus_tag="JJJ11_RS00570"
                     /old_locus_tag="JJJ11_00570"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_065554959.1"
                     /translation="MEQKTNKKMEKIITETLHSLGLKTTKESLNKTIFLLNFGSLKSHQ
                     AVFDEAFSEITEAKQWRSWQAITDCLNEHTNAAMTVMTVRTMYKRAKKKSLEPRKTAHA
                     GQA"
                     /name="hypothetical protein"
ORIGIN
        1 ccacttgttt tttgtatgta tatggggggg gggacatgtg cgttttcttg tggagttatc
       61 tccatttgct cacgaccatc cccccccttt cgcaggatgt atttttgcga cttaccaata
      121 gccttaccgg tatcatcgac aaaagtgcaa ttcattgtgt atatcacctt cccttgaggg
      181 gggggcgtgc tatcaattcc actggaatga gcggcttgta acgtaacgat aaataaaaaa
      241 ataggtatga attttagctt cacgtagtgt ctccgttgca aaaaaagcct aatgcccccg
      301 tggtgggtat ataaaaatca cggggagcag agcgaccttc gtccagctcg tttcttgtgt
      361 ctctcaccct gcaaggggct tgattgtgtg ggtgaagtgt cagaccttag caatcacact
      421 tcaccgctta ccgctgcctt gttcgctcat tttatcaggt gccagttatc gtactgcgag
      481 acggggtaga gcttaactct ttcgcggtta agttacgttc ccaccgtttg cctgtttatc
      541 ctgccggagt ccggggcgta gacctgagcg tctaaggtgc agatatgagt ttaatgtcgt
      601 tgaatggtat taagctggta gtgacaaggc tagccagccc tgctaggatt ggattgctac
      661 gtctgatcct ggcaggtatc tgcgaagaat tagagtaccg aagccctgtg attctgtcac
      721 ggggcttttg tacatttagc gccggataat caaaaacatc ctttcctgat aacccgcaac
      781 gctcgccgca gaagcaagtt tacttgcgcc gaggaagcgt catatcacca tttcttgagg
      841 ttgactgcgt tcacgcctgg cctgcatgtg ctgtctttct tggctcaaga ctctttttct
      901 tcgcccgttt gtacatcgtt ctgacggtca ttaccgtcat tgccgcattc gtatgctcgt
      961 tcaggcaatc cgttatcgct tgccagcttc tccactgttt ggcttcggtt atctcactga
     1021 atgcttcgtc aaacaccgcc tgatgactct ttagcgaccc gaaattcagc agaaagatcg
     1081 ttttgttcaa cgattctttt gtcgttttca gaccgaggct atgtagcgtt tccgtgatta
     1141 tcttttccat ttttttgttt gttttttgct ccatctagtt catgtgtacg caatgttgta
     1201 cgtcgttttg taggcatatt tcgtggatgt gtacgttgtt ttgtacggaa ccattcggtt
     1261 catgtacgca gatttgtacg caggacaaaa atgaatctag aactacaggc acgataccga
     1321 ccgtacacat ttgaggacaa aatgaggaca tttttctcaa gtgtatacgg tcgcgtgcca
     1381 aagggaaatt ccctttgtaa ccctgatgcg gttctacgaa cctttaaaat aactaccgcc
     1441 tcgccttgct cgttggtcaa cgcttcacga caccggatta aaatccgttc ccgttcaccg
     1501 tttcagcctg ggggcgtgca gctccttcac gcaaaaggcg tgttttgatg atttgagggg
     1561 ctttcgtgtc tgaaatcggc agccagtcag tcgggtgcat aaccattcac gcccataaaa
     1621 ctcatcagcg cgattttcag cggtttttag ggggggcggc gtaggatttc atgggttaga
     1681 gcgtaaaacg gcgctaaggc cgttttagcg gtgcgcgtaa tgacgcgtta tggtaaataa
     1741 acaggattgt cgcatgtggc tttcgctatc gaaatcgcag gggaatcaat aaactctatt
     1801 tccacagtgg ttttatcgcc cctgatcacg gtcatccgta ctgtattgtt ccagtagaag
     1861 gttttgaacc caccattggt gtaagca
//
