LOCUS       NZ_CP067085             1240 bp    DNA     linear   CON 26-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica strain 679 plasmid pSal679_4.
ACCESSION   NZ_CP067085
VERSION     NZ_CP067085.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17107823
            Assembly: GCF_021545725.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica
  ORGANISM  Salmonella enterica subsp. enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1240)
  AUTHORS   Zhou,K.
  TITLE     Identification mcr-9 in MDR Salmonella enterica serovar Typhimurium
            and Enterobacter roggenkampii strains isolated from cases of
            bloodstream in children in China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1240)
  AUTHORS   Zhou,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-DEC-2020) Institute of Respiratory Diseases, Shenzhen
            People's Hospital, Dongmenbeilu, Shenzhen 518020, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 110.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/24/2024 14:12:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,872
            CDSs (total)                      :: 4,752
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 139
            CDSs (without protein)            :: 139
            Pseudo Genes (ambiguous residues) :: 0 of 139
            Pseudo Genes (frameshifted)       :: 55 of 139
            Pseudo Genes (incomplete)         :: 102 of 139
            Pseudo Genes (internal stop)      :: 18 of 139
            Pseudo Genes (multiple problems)  :: 34 of 139
            Pseudo Genes (short protein)      :: 1 of 139
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP067085.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Salmonella enterica subsp. enterica"
                     /mol_type="genomic DNA"
                     /strain="679"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:59201"
                     /plasmid="pSal679_4"
                     /geo_loc_name="China: Guangdong"
                     /lat_lon="22.56 N 114.13 E"
                     /collection_date="2019-10"
                     /collected_by="Shenzhen People's Hospital"
     gene            <1..277
                     /locus_tag="JEZ79_RS24345"
                     /old_locus_tag="JEZ79_24180"
     CDS             <1..277
                     /locus_tag="JEZ79_RS24345"
                     /old_locus_tag="JEZ79_24180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016243913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_196367936.1"
                     /translation="CDQQFLANQMGVSTRTIRRWLDYLEEKGALVRIPVAGKVCAYALD
                     PHEVWKGYNTSKDYSAFVTKTLVNKDGEIKRRIMAMFSGEESGQEQ"
                     /name="helix-turn-helix domain-containing protein"
     gene            1008..>1240
                     /locus_tag="JEZ79_RS24350"
                     /pseudo=""
     CDS             1008..>1240
                     /locus_tag="JEZ79_RS24350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000634347.1"
                     /note="incomplete; too short partial abutting assembly gap;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 ctgcgatcag cagtttttag ctaatcagat gggtgtttct actcgaacaa ttcgtcgttg
       61 gttagattat ttggaggaga aaggtgcttt ggtaagaata ccagttgctg gaaaggtttg
      121 tgcttacgct ttagatcctc acgaagtctg gaaaggatat aacacatcaa aagactactc
      181 agcctttgtt accaagacat tagtgaacaa ggatggagaa ataaaacgcc ggataatggc
      241 tatgttttcc ggagaggaga gcggtcaaga gcagtagcga agcgactctt gacggctcgg
      301 aacgaccccc accctcagaa agggggatgg ttcgccacag cgagccatcc ccatgataag
      361 ccgcccttta agcagtagat cccataaata aataaaacag cacatcactt ttgtaatgtg
      421 cggcattcct ttgggactaa aagaagttag ccaggaatgt aatacagaaa ctttaccgac
      481 aaggaggtca tcatgatcac gtcaacaatc atcacaatca tcggcttaat tgggagtctc
      541 ataacgattt accgagagat atacccgagg gataagcact aattagccag tatacactcc
      601 gctagcggag tgactggttc agggcttcgc cccgaaaccc ttgaaaaccg tcaatcatgg
      661 tgatggctca ctacgcgagc catcaccaga tacaaggtta aacgggcatt ttgatcgtca
      721 aggtcaagcc gctaacgcgg tcgcctatgg cgaaccctga ccctcaaaat gcccgaccgg
      781 agggagggag ctaccttgaa ctttggtgtt gtctgttggt tttcatagaa gagaatagag
      841 ataaataata agttattgat ttttatagtt ttggtttttt ctgataggac acagctggtg
      901 tccgcacgtg aggacacagc tggtgtccgc atgtggctgg acataggaca tctcaagtcc
      961 tatgatggga caaaaatgtc ctatcaaaaa gacaccgagg gataaagatg atcgtagctt
     1021 cagaacacca agcaaagcta aggcagaaag aaatacagga aatcgacaag aaggcatcta
     1081 aagagcacga ggaggcaaag aagaacagta acttcactca gacataccca aagggctggc
     1141 aacgcattag agagcttgtg agggacaaac aaggtgctgc cgctataggt ctttactcat
     1201 ttttcgctga acacatagat cctacatgcg gtgcagtggt
//
