LOCUS       NZ_CP067084             2264 bp    DNA     linear   CON 26-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica strain 679 plasmid pSal679_3.
ACCESSION   NZ_CP067084
VERSION     NZ_CP067084.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17107823
            Assembly: GCF_021545725.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica
  ORGANISM  Salmonella enterica subsp. enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2264)
  AUTHORS   Zhou,K.
  TITLE     Identification mcr-9 in MDR Salmonella enterica serovar Typhimurium
            and Enterobacter roggenkampii strains isolated from cases of
            bloodstream in children in China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2264)
  AUTHORS   Zhou,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-DEC-2020) Institute of Respiratory Diseases, Shenzhen
            People's Hospital, Dongmenbeilu, Shenzhen 518020, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 110.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/24/2024 14:12:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,872
            CDSs (total)                      :: 4,752
            Genes (coding)                    :: 4,613
            CDSs (with protein)               :: 4,613
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 139
            CDSs (without protein)            :: 139
            Pseudo Genes (ambiguous residues) :: 0 of 139
            Pseudo Genes (frameshifted)       :: 55 of 139
            Pseudo Genes (incomplete)         :: 102 of 139
            Pseudo Genes (internal stop)      :: 18 of 139
            Pseudo Genes (multiple problems)  :: 34 of 139
            Pseudo Genes (short protein)      :: 1 of 139
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP067084.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2264
                     /organism="Salmonella enterica subsp. enterica"
                     /mol_type="genomic DNA"
                     /strain="679"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:59201"
                     /plasmid="pSal679_3"
                     /geo_loc_name="China: Guangdong"
                     /lat_lon="22.56 N 114.13 E"
                     /collection_date="2019-10"
                     /collected_by="Shenzhen People's Hospital"
     gene            773..1090
                     /locus_tag="JEZ79_RS24330"
                     /old_locus_tag="JEZ79_24165"
     CDS             773..1090
                     /locus_tag="JEZ79_RS24330"
                     /old_locus_tag="JEZ79_24165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000718045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000718044.1"
                     /translation="MKKIFILSAALIMAGCATKQYPQAANVTGPESSAMDCKAVALEIA
                     KTRSVQQEIEATGEFDGRTVLGFLGDFGIGNGMAKGEARKKAANRLNQLEALKAAKCAV
                     Q"
                     /name="hypothetical protein"
     gene            1342..1530
                     /locus_tag="JEZ79_RS24335"
                     /old_locus_tag="JEZ79_24170"
     CDS             1342..1530
                     /locus_tag="JEZ79_RS24335"
                     /old_locus_tag="JEZ79_24170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165998.1"
                     /translation="MTKQESAALNMAKFIRAQSLLLLEKLDVLDLDDEAADCERMHEQA
                     EALYQKLSARFGIQDGE"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1578..1844)
                     /locus_tag="JEZ79_RS24340"
                     /old_locus_tag="JEZ79_24175"
     CDS             complement(1578..1844)
                     /locus_tag="JEZ79_RS24340"
                     /old_locus_tag="JEZ79_24175"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_223173001.1"
                     /translation="MKRSQLTLIDGCFMFGFSPGELMNLCPDERLLFVRMISAMLRRSG
                     GDAGAVMFEAYRHIVSDTNQARRSYMLDLLESVRHDYVHGGYT"
                     /name="hypothetical protein"
     Typing          complement(1989..2161)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.954"
                     /coverage="100.0"
                     /evalue="2.04e-62"
     Typing          78..598
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.679"
                     /coverage="99.0"
                     /evalue="3.55e-179"
ORIGIN
        1 ataaggccgc ggcgaagccg tttttccata ggctccgccc ccctgacaag catcacgaaa
       61 tctgacgctc aaatcagtgg tggcgaaacc cgacaggact ataaagatac caggcgtttc
      121 cccctggtgg ctccctcgtg cgctctcctg ttcctgcctt tcggtgtacc ggtgtcattc
      181 cgctgttatg gccgcggttt ctcattccac gcctgacact cggttccggg aaggcagttc
      241 gctccaagct ggactgtatg cacgaacccc ccgttcagtc cgactgctgc gccttatccg
      301 gtaactatcg tcttgagtcc aacccggaaa gacacgacaa agcgccactg gcagcagcca
      361 ctggtaacag gattagcaga gcgagttaat gtagatggtg ctatagagtt cttgaagtgg
      421 tggcctaact acggctacac tggaaggaca gtatttggta tctgcgctct gctgaagcca
      481 gttaccaggt taagcagttc cccaactgac ttaaccttcg aaaaaccacc tccccaggtg
      541 gttttttcgt tttcagagca agagattacg cgtagaaaaa aaggaactca agaagatcct
      601 ttctatgctc aaccaccgca tggcccatag ccgcgctggc cgttgccggt cagctccaga
      661 atcctcgacc aatatggaac cttgcccctc ccaaaattca actaaaaaac cctcatttcc
      721 tgccgataaa atgggtatct cttaactatg cctaaataaa ataaggataa ttttgaaaaa
      781 aatattcatc ctatcggcag cgctgatcat ggcaggatgc gcaacaaagc aatatccaca
      841 ggccgcgaac gtcaccggtc cagaatcttc cgcaatggat tgcaaagcgg tagctctgga
      901 aatcgcaaaa acgcgcagtg tacaacaaga aattgaggca accggcgaat ttgacgggcg
      961 caccgtatta ggtttcctgg gtgattttgg gataggaaat ggcatggcaa aaggcgaagc
     1021 ccgcaaaaaa gcagctaacc ggctaaatca gctggaagcc ctgaaggctg caaagtgtgc
     1081 agttcaataa ggtacaaaaa agccctgcgg ggcttttttt gtacctgcca atcagctgga
     1141 tttaccataa catccgttgc ccgcaccgcc tcaggcgccc tcagggcgtt tctgaggact
     1201 ccggcctgaa acatacacct ttctgtgccc atatcgagaa aaaacgcccc tgatgatttc
     1261 tgcgtacctg catggctatg cactcaagtg aatgaagtaa gatttcagtc tgcgatcacc
     1321 ataaaaccgg gaaaaagccg tatgacaaaa caggaatcag ccgcactgaa catggcaaaa
     1381 tttatccggg cgcagtcgct gctgctgctc gaaaaactcg acgtgctcga tcttgatgac
     1441 gaggcagccg actgtgagcg aatgcacgaa caggcagaag cgctttatca gaagctgagc
     1501 gcacgcttcg gtatacagga cggcgaataa agagacgaaa agaacgctca cttagacgaa
     1561 aagcgtatcc agggcaacta tgtatatcca ccgtgtacat agtcatgcct gacgctttcg
     1621 agcaggtcga gcatgtagga acgacgagct tgattggtat cggacacaat atggcgatac
     1681 gcctcaaaca taacagcacc cgcatcaccg cccgaacggc gaagcatagc ggaaatcatc
     1741 cgcacaaaga gcagacgttc atcggggcaa aggttcataa gttctcctgg tgaaaaacca
     1801 aacatgaagc acccatctat taacgtcagc tgtgaacgct tcattacgct tcattaaaat
     1861 aggtaaaccc gggaaaaaga tccaaacgtt aacatcacag gtaaacagaa acgtcgggtc
     1921 gatcgggaaa ttctttcccg gacggcgcgg ggttgggcaa gccgcaggcg cgtcagtgct
     1981 tttagcgggt gtcggggcgc agccctgaac cagtcacgta gcgctagcgg agtgtatact
     2041 ggcttactat gtaggcacgg gtgcgggaat cagtgaagtg cttcatgtgg caggaggaaa
     2101 atgcagcagc agagcgtaag cggaatatat gagacaggag atattccgct tcctcgctca
     2161 ctgactcgct gcgctcggtc gttcggctgc ggcgagcggt gcgggcttac gaatggggcg
     2221 gaaatttcct gggagatgcc aggaagaaac ttaacaggga aacg
//
