LOCUS       NZ_CP067052             2056 bp    DNA     linear   CON 30-MAY-2024
DEFINITION  Klebsiella pneumoniae strain B6753 plasmid pColpVC.
ACCESSION   NZ_CP067052
VERSION     NZ_CP067052.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16393502
            Assembly: GCF_015159775.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Veeraraghavan,B., Shankar,C., Vasudevan,K. and Jacob,J.
  TITLE     Hypervirulent Multidrug resistant Klebsiella pneumoniae VB6753
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2056)
  AUTHORS   Veeraraghavan,B., Shankar,C., Vasudevan,K. and Jacob,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JAN-2021) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
REFERENCE   3  (bases 1 to 2056)
  AUTHORS   Veeraraghavan,B., Shankar,C., Vasudevan,K. and Jacob,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-OCT-2020) Clinical Microbiology, Christian Medical
            College, Ida Scudder Road, Vellore, Tamil Nadu 632004, India
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: Unicycler v. 4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 81.6x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_015159775.2-RS_2024_05_30
            Annotation Date                   :: 05/30/2024 04:08:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,670
            CDSs (total)                      :: 5,550
            Genes (coding)                    :: 5,387
            CDSs (with protein)               :: 5,387
            Genes (RNA)                       :: 120
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 163
            CDSs (without protein)            :: 163
            Pseudo Genes (ambiguous residues) :: 0 of 163
            Pseudo Genes (frameshifted)       :: 74 of 163
            Pseudo Genes (incomplete)         :: 96 of 163
            Pseudo Genes (internal stop)      :: 28 of 163
            Pseudo Genes (multiple problems)  :: 32 of 163
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP067052.1.
            Bacteria and source DNA available from Department of Clinical
            Microbiology, Christian Medical College, Vellore, India.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="B6753"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pColpVC"
                     /geo_loc_name="India"
                     /lat_lon="12.9165 N 79.1325 E"
                     /collection_date="2019"
                     /collected_by="Department of Clinical Microbiology,
                     Christian Medical College, Vellore"
     gene            624..815
                     /locus_tag="IL988_RS28270"
                     /old_locus_tag="IL988_028155"
     CDS             624..815
                     /locus_tag="IL988_RS28270"
                     /old_locus_tag="IL988_028155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020324555.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     gene            1138..>2056
                     /locus_tag="IL988_RS28275"
                     /old_locus_tag="IL988_028160"
     CDS             1138..>2056
                     /locus_tag="IL988_RS28275"
                     /old_locus_tag="IL988_028160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_193768274.1"
                     /translation="MKNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIGELGDTLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVKHARWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRI"
                     /name="protein rep"
     Typing          complement(1856..2045)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.906"
                     /coverage="99.0"
                     /evalue="1.72e-88"
ORIGIN
        1 cgttcgagtg gaaaaccgag gtcagaaaat accgtcgctc accaacgaaa gataaaaccg
       61 aatcagagta acggggtgtc ggggctgcgc cctgaccatg aggactttgg gcatccgtca
      121 ccttggtggc ggtgtaccaa agtcacatct tgtccgattg attttactcc gatgcaggat
      181 agggctgccg ccgcaaagtg acgtcactcg attgctgagt tcggattccg aacctgggtt
      241 ttccttccgg taattttccg gaaggcgcgc ttagtagttt ctccccttcg gtgagaaact
      301 gcgcggtggg gcaagcccac gaaaaacaaa aactgacacc ggacaagatg tgtttttgga
      361 gtaccgccat cacgatgtcg gtaccaaaaa cgatccgtca gggctgcgcc ccgacaccct
      421 gccaacacct cacgccgcca gattaaaatc tgtcagcgtt cgccgttccc gaaatcgtca
      481 aacgctaaat cgcggggtcc cgctggcttg ccagtgggtt ccgatttagt gattgacgac
      541 agcacccgta gaatacttac agggggtggt tgtgatcacg cagtgagcgc aaccacctga
      601 taggcgtttt tgagggggta ggtatgatcg tcagactgga taaccggctg tttgagattc
      661 tcgatgagat gggtgcgcat gtggatcggg aaatgttcat ggcggcctat gcacagcgga
      721 aggccgaaaa ggaaaatgat ccccggcata tccgtcagcg gaaattgacc aggttggctc
      781 atgatttgat gtcagaatcg gaccctgaat tgtgagcctc gcgtgcgcgc gagggaaatt
      841 ggtcagaaaa tcgccggatt ttcatgcgcg cgatccttgt atttatactt aagggataac
      901 tctggcgtta aaaataagcc tcagcccttg tgcctcaagg gtttcagcgt gatttgcctg
      961 aaaatgactt tgaagttatt ctgtcgggag tggtcgcgtt aaaagcgacc cccgcaacga
     1021 cggccatcgt tcgggggtgt gaccacctgt aggaattcta ttttgcgaca gacaacacag
     1081 gtgatacggc aatgataaca cgtcaaatga gccatcgccc agtatgggac ggtgcgcatg
     1141 aaaaaccctg aactccagaa cctcacggac tattccccct cagatgcgcc ctgggacgct
     1201 cacagaagcg tttctgacga cgtgggaggg atttacctgc ttgcggccga atatgagcgc
     1261 tacggggcgc gtatggcctc ctgcggcggt ttactgcgtt tcgggtggtc taccctcaaa
     1321 gaaaccggag aaacgcgcct gaggctgcgt gaggcgcatt tctgccgtgt ccggcactgt
     1381 cctgtctgcc agtggaggcg ctccctgatg tggcaagccc gtttctacca gtccctgccg
     1441 cgtatcgtgg cggattaccc cgattcccgc tggatgttcc tgaccctgac cgtgcgcaac
     1501 tgtgcgatcg gggagctggg cgatacgctg agccggatga acacggcttt ccagcggctg
     1561 aaggatcgca aagagttcag accagttcag ggatggatcc gcaccacgga agtcacccgc
     1621 ggcagtgacg gcagcgcaca cccgcacttc cacacactga tgatggttcc gcctggcatg
     1681 cttaacggga agagttacgt caaacatgcg cgctgggttg agctgtggcg ggagtgcctt
     1741 cgggtcagct acgatccgaa tgtcgatgtc cgggcagtga aaccccggaa gccgaaggac
     1801 ggcgaatcgc tggcctgcgc gaccgccgaa ctggtgcgcg gcgcggtggc cgagaccctg
     1861 aaatattcca cgaagccggc cgacatggtc gccgatcctg aatggttcct cgaactgacc
     1921 cgccagacgc acaagcgccg ctttgtggcg accggcggcg cactcaaaga cgtattgaaa
     1981 ctcgatcagg aaaccgacgc cgacatggtg atcggggatg atatttccga gggcgacgat
     2041 gacggttcac gcatcg
//
