LOCUS       NZ_CP066371             2348 bp    DNA     circular CON 03-APR-2024
DEFINITION  Staphylococcus epidermidis strain PH1-28 plasmid pSE5, complete
            sequence.
ACCESSION   NZ_CP066371
VERSION     NZ_CP066371.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16085533
            Assembly: GCF_016406625.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus epidermidis
  ORGANISM  Staphylococcus epidermidis
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2348)
  AUTHORS   Hilaire,P., Landemaine,L., Contreras,S., Blanquart-Goudezeune,H.,
            Siguier,P., Cornet,F., Chiapello,H., Loux,V., Clavaud,C. and
            Morand,S.C.
  TITLE     Complete Genome Sequence of Staphylococcus epidermidis PH1-28,
            Isolated from the Forehead of a Hyperseborrheic Donor
  JOURNAL   Microbiol Resour Announc 10 (9), e00165-21 (2021)
   PUBMED   33664152
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2348)
  AUTHORS   Morand,S.C., Contreras,S., Hilaire,P., Blanquart-Goudezeune,H. and
            Clavaud,C.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2020) Advanced Research, L'Oreal, 1 Avenue Eugene
            Schueller, Aulnay-Sous-Bois 93600, France
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: NOV-2020
            Assembly Method :: MaSuRCA v. v3.3.0; SPAdes v. v3.10.1; CANU v.
            v2.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 4828.0x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_016406625.1-RS_2024_04_03
            Annotation Date                   :: 04/03/2024 04:47:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,504
            CDSs (total)                      :: 2,420
            Genes (coding)                    :: 2,334
            CDSs (with protein)               :: 2,334
            Genes (RNA)                       :: 84
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 86
            CDSs (without protein)            :: 86
            Pseudo Genes (ambiguous residues) :: 0 of 86
            Pseudo Genes (frameshifted)       :: 54 of 86
            Pseudo Genes (incomplete)         :: 39 of 86
            Pseudo Genes (internal stop)      :: 39 of 86
            Pseudo Genes (multiple problems)  :: 35 of 86
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP066371.1.
            Bacteria and source DNA available from L'Oreal Advanced Research.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2348
                     /organism="Staphylococcus epidermidis"
                     /mol_type="genomic DNA"
                     /strain="PH1-28"
                     /host="Homo sapiens"
                     /db_xref="taxon:1282"
                     /plasmid="pSE5"
                     /geo_loc_name="France"
                     /collection_date="2012-06"
     gene            1..936
                     /locus_tag="ICN77_RS00005"
                     /old_locus_tag="ICN77_002490"
     CDS             1..936
                     /locus_tag="ICN77_RS00005"
                     /old_locus_tag="ICN77_002490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002440612.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_160195540.1"
                     /translation="MSRENYSKYLQNKDSDILHSTGYSNSRLHAHTVCISKPKISFDRM
                     TIVGNLNKNNAQKLSEFMSTEPQIRLWDILQTKFKAKALQGKVYIEYDKVKADTWDRRN
                     MRVEFNPNKLTHEEMLWLKQNIINYMEDDGFTRIDLAFDFEDDLSNYYAMTDKAVKKTV
                     FYGRDGKPETKYFGVRDSDRFIRIYNKKQERKDNADVEVMSDHLWRVEIELKRDMVDYW
                     NDCFNDLHILKPDWKIIERTSDRAIVFMLLNDEEEWGKIHRNSRTKYKNLIKEISPVDL
                     TELMKSTLRENEKQLQKQIEFWQIKSKKLF"
                     /name="replication initiation factor domain-containing
                     protein"
     Typing          58..911
                     /name="rep_cluster_1118"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="90.058"
                     /coverage="90.0"
                     /evalue="0.0"
ORIGIN
        1 atgagtagag aaaattattc aaagtactta caaaataagg atagtgatat tttacactca
       61 accggctact ctaatagccg gttacacgca catactgtgt gcatatcgaa accaaaaatc
      121 agtttcgacc gtatgacaat tgttgggaat ttaaataaaa ataatgctca aaagctatct
      181 gaattcatga gtactgaacc acaaattaga ctttgggata tactacaaac gaaatttaaa
      241 gctaaagcac tacaaggaaa agtttatatt gaatacgaca aagtaaaagc agatacatgg
      301 gatagacgta atatgcgtgt tgaatttaat ccgaataaac ttacgcatga agaaatgctt
      361 tggttaaaac aaaacattat caactacatg gaagatgacg gttttacaag aatagattta
      421 gcttttgatt ttgaagatga tttaagtaat tattatgcaa tgactgataa agcagttaag
      481 aaaactgtat tttatggtcg tgacgggaaa ccagaaacaa aatattttgg cgttcgtgat
      541 agtgatagat ttattagaat ttataacaaa aaacaagaac gtaaagataa cgcagatgtc
      601 gaagttatgt ctgatcactt atggcgtgta gaaattgaac ttaaaagaga tatggtggat
      661 tactggaatg attgttttaa tgatttacat attttgaaac cagattggaa aataattgaa
      721 cgcacttctg atagagcaat agtttttatg ttgctaaatg atgaagaaga atggggtaaa
      781 attcatagaa attctagaac caaatataaa aacttaatta aagaaatatc tccagttgat
      841 ttaacggaat taatgaaatc gactttaaga gaaaatgaaa aacaattaca aaagcaaata
      901 gaattttggc agataaaaag taagaagcta ttttaaaaat ggctaccatt cggctccctt
      961 ttagctccca aatagctacc taataatgta gctatttggg agccattttt gattttaggt
     1021 atccatatgg tatccatttt tgattttgtg tagctattcg gtagcttttg tgtagccgtt
     1081 cgggagtcat ataacaattt ttatcgcata aataggaatc ccatttgaca ctgtcaaatc
     1141 aatattttgc acagaaatag ctaccgaatg gagacatttg gagacatttc tgtgcaggat
     1201 tccacttatg ctctttaaaa tacaagagtt acattataca cctatttttt aaggctttag
     1261 ctttttatta agaagaataa ccgagataga aaaacatatt tcgtattcta aaagatttag
     1321 aaaataaatt ttaaaatgat ttatcgtctc tctgttgaac gaaaaaagtt tttagttatt
     1381 ttttatacgt ggaatgatta aatgtcctag aaagggctta aaatgcaaaa taaaagaacc
     1441 actcaaaaat gagtggtctg gagaatagca ataaaatgct gtgcgattaa aattgagcac
     1501 tgtattgagc ataccatacg catttatgcc gagaaaattt attgatgttg agaagaaccc
     1561 ttaactaaac ttggagacga atgtcggcat agcgtgagct attaagccga cgatttgaca
     1621 agtttaggga ttgttaaggg ttccgaggct caacgtcaat aaagcaattg gaataaagca
     1681 ttaaaaaata gccactcaat ttgtgagtag ctatttttgg gcgaagatca cttcacatta
     1741 aaagactaaa actaaatgtg aatgaggata atgctatatt tttactttaa cacttattta
     1801 ttttcatctc atccaaaacc attaaaaata gtcactcaat tattgagtga ctatgggttg
     1861 gtagaagaac tatttcatgt taaaagaatt aatgatgttc gagaattata ttttcacttt
     1921 aacatttatt taatcatagt gcattcaaaa gtatttaacg atgagatttt ttggcttttt
     1981 tgaaacgagt ttcttcttgt cttgatacta tatagaaata actcaatttt tgaattaagg
     2041 ctttatccct tgtcaataaa gggttaaggc gtttttttgt tgttgaaaga aatttttgac
     2101 ataggtttat aaacaccaaa aagcttggtc ataatagacc aagctttttg atagtgttat
     2161 attaataaca aaataaaaag aagtcgctca ctcccccgcc aaagtttgtg aatgcgactt
     2221 acccaaggaa aaacattaag ttgtttttta tattttgtat atctagatat taaacgatat
     2281 tagttttttc ttcaaggtat atattcgggt gagcgacttc ttaaattaaa ttaaggagtc
     2341 gatttttt
//
