LOCUS       NZ_CP066135             3186 bp    DNA     linear   CON 06-JUN-2024
DEFINITION  Morganella morganii strain FAM24675 plasmid unnamed2.
ACCESSION   NZ_CP066135
VERSION     NZ_CP066135.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17070466
            Assembly: GCF_019243235.1
KEYWORDS    RefSeq.
SOURCE      Morganella morganii (Proteus morganii)
  ORGANISM  Morganella morganii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Morganella.
REFERENCE   1  (bases 1 to 3186)
  AUTHORS   Ryser,L.T.
  TITLE     Morganella morganii cheese
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3186)
  AUTHORS   Ryser,L.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2020) Agroscope, Agroscope, Schwarzenburgstrasse
            161, Bern 3003, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.3.4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 133.0x
            Sequencing Technology :: Oxford Nanopore MinION; IonTorrent
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_019243235.1-RS_2024_06_06
            Annotation Date                   :: 06/06/2024 02:17:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,126
            CDSs (total)                      :: 4,021
            Genes (coding)                    :: 3,918
            CDSs (with protein)               :: 3,918
            Genes (RNA)                       :: 105
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 103
            CDSs (without protein)            :: 103
            Pseudo Genes (ambiguous residues) :: 0 of 103
            Pseudo Genes (frameshifted)       :: 63 of 103
            Pseudo Genes (incomplete)         :: 39 of 103
            Pseudo Genes (internal stop)      :: 8 of 103
            Pseudo Genes (multiple problems)  :: 7 of 103
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP066135.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3186
                     /organism="Morganella morganii"
                     /mol_type="genomic DNA"
                     /strain="FAM24675"
                     /isolation_source="cheese"
                     /db_xref="taxon:582"
                     /plasmid="unnamed2"
                     /geo_loc_name="Switzerland"
                     /collection_date="2015-01-20"
     gene            877..1200
                     /locus_tag="JC826_RS20390"
                     /old_locus_tag="JC826_20395"
     CDS             877..1200
                     /locus_tag="JC826_RS20390"
                     /old_locus_tag="JC826_20395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_004193914.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1409..>1843
                     /locus_tag="JC826_RS20845"
                     /pseudo=""
     CDS             1409..>1843
                     /locus_tag="JC826_RS20845"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1878..2363
                     /locus_tag="JC826_RS20400"
                     /old_locus_tag="JC826_20405"
     CDS             1878..2363
                     /locus_tag="JC826_RS20400"
                     /old_locus_tag="JC826_20405"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            2367..2582
                     /locus_tag="JC826_RS20405"
                     /old_locus_tag="JC826_20410"
     CDS             2367..2582
                     /locus_tag="JC826_RS20405"
                     /old_locus_tag="JC826_20410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            2750..3082
                     /locus_tag="JC826_RS20410"
                     /old_locus_tag="JC826_20415"
     CDS             2750..3082
                     /locus_tag="JC826_RS20410"
                     /old_locus_tag="JC826_20415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     ARG             2751..3082
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          590..781
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.308"
                     /coverage="89.0"
                     /evalue="3.38e-71"
     Typing          complement(127..607)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.867"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          1191..2680
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.784"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttgttccgat ggtaactggc tttcacggag cgcagatacc taaactgtcc tttcagtgta
       61 gccgcactca ggctttcact tcaagaactc tgtaggcatt ctctacaatc tctgctccgt
      121 gaacccagtt accaatggct accgccactg gcgatttgtc gtgtctttcc gggttggact
      181 caagttgata gttaccggaa cgggcgtggt agtcggactg aacggggggt tcgtgcatac
      241 agtccatcct ggagcgaact gcctacccgg aaccgagttt caggcgtgga atgagaaacc
      301 gcggccataa cagcggaatg acaccggtaa accgaaaggc aggaatgcgg gggagcacga
      361 gggagccacc agggggaaac gcctggtatc tttaagccgc atcgggtttc gccaccgctg
      421 atttgagcgt cattttcgtg atactcgtca ggggggcgga gcctatggaa aaacggcaac
      481 tccgcatcct tttcttggcc tttcctgctt cgagcggcat ttgcttatcc cgtaatctgt
      541 gagctggtaa cgcccgccgc agtctcacgg caggagcgta gcgaccgagt gagcgaggag
      601 gcgtcatttc atcaccacct gcattttgca cttacgcccg gcagccgcat ttttcccctg
      661 tcacatgaag cactttcata aattgccact ccgtcataac atgtttagcc agtatacact
      721 ccgctagcgc tacgtgactg gttcagggct gcgccccgaa acccgctaaa accactgccg
      781 cgcctgcggc ttgtccaaca ccgtgccgac cgggaaaaga tttcccgtcc gtcccggcgt
      841 tatcaggagg ccggattggc agacaaacgc agcaaaatgc tcaccatgtg ggtgactgag
      901 gacgagcacc ggcgtctgct ggagcgctgc gagggtaagc aactcgcggc ctggatgcgg
      961 cagacgtgcc tggacgagaa gcccgcacgc gccggcaaac ttccgtcgat ctcgccggcg
     1021 ctgcttcgtc agcttgccgg catggggaac aaccttaacc agattgcccg ccaggttaac
     1081 gccggtggtg gaagcggaca cgaccgcgtg cagattgtcg ccgcgctgat ggccatcgat
     1141 gccggactcg agcggttgcg gcatgccgta ctggaaaagg gtgctgatga tgatcgttaa
     1201 gtttcatcct cgggggcgcg gcggcggcgg cgggccggtc gattatctgc tgggtaaaga
     1261 tcgccagcgc gacggcgcca gcgttctgca ggggaagccg gatgaagtcc gggagcttat
     1321 cgacgcctcg ccctacgcca aaaagtacac ttccggcgtt ctgtcttttg ccgaacagga
     1381 tttaccgccc ggccagcgcg aaaagctgat ggcgagtttc gagcgggttc tgatgcccgg
     1441 actcgataaa gaccagtaca gcgtgctgtg ggttgagcac cgggacaagg ggcggctgga
     1501 gctgaacttc ctgatcccga acacggagct tctgaccggc aagcggctac agccgtatta
     1561 cgaccgcgcc gaccgtccgc gcatcgatgc ctggcagacc atagtgaacg gcaggctggg
     1621 gctgcatgac ccgaacgcgc cggagaaccg gcgggtgctg gtctcgcctt ccgcgctgcc
     1681 ggaagcgaag caggaagccg cccaggcgat tacgagcggc ctgcttgccc ttgcctcatc
     1741 cggggagctg aaaacgcgtc aggacgtcac tgaggcgctg gaaagcgcag gttttgaggt
     1801 ggtgcgcacc acaaaaagca gcatcagcat tgccgacccg gacggggggc gaaacatccg
     1861 actgaaggga gccatctatg aacagtcttt taacgctggc gaaggactta gagcagaaat
     1921 cgaaagcgca gcagcagact accggcgaga tgctgaaagc cgcattcagc gagcacgaga
     1981 agtctgtcag agcggaactg agcgaaagcg agaagagaat cagcgccgcc atcctcgacc
     2041 acgaccggaa gctgtcctca gccatgagcc agcgcacgaa agggatgctg cgcatggtca
     2101 gccagacgtg gctgaccatc gttctggtct ccgcgctgct gatagcgtcg agcgcgggca
     2161 ttctgtggtg gcaggggcag cagatactcg agaactatac gaccatccgg gagcagaaga
     2221 gcacgcaggc catgctgtca gagaggaaca gcggcgtaca gctctcgacc tgcggcgagc
     2281 agagacgccg ctgcgtgagg gtgaacccgg aagcgggaca gttcggagag gactcgagct
     2341 ggatgatact ggcggggaaa tagcacatga cggagctgga aaaacagttg ctgagcgcat
     2401 tagagcagct acagcaggac tactcgaaaa ggctggacga gtgggagaac gccttcgcgg
     2461 aatggcggac gatgtctggt cttattcaac gggagaacgc ggcgctgaac gagcgcgtca
     2521 cggtcttgag caggcaggtg cagagtttga gcgagcagct gcgccggttg tcgaaaggct
     2581 gaacgcgata gaaactcacc ggcagcagga gcgggcggtg cagcaccaga aagcgctgga
     2641 gctggaacga tcgcagtggc agcatcatgg tccttcgcta tgataagccg ggttctatta
     2701 attagttgtt atgtaaagat atttaaattt ttcaacatga ggtattttta tgaatacata
     2761 tattttcctg ggaggggcta ttgtggctga agtcataggc accaccttta tgaaatattc
     2821 agaaggattt acacgcctgt ggccgtctgt aggaactgca ataagttatt gcgctgcctt
     2881 ttatctgctt tcccaaacat tggaaaatat acctaccggt attgcttacg caatttggtc
     2941 tggtgcggga attgtactaa taagcctagc tggttggttg gttagcggtc aaaaacttga
     3001 ttggcccgca attgcaggaa tgttccttat ttgcgttgga gttttggtta ttaatatttt
     3061 ttcaaaatct tctgcgcatt aactttttac cgaagcatat tggccaaagc aaaaggattt
     3121 ccttgagatc ctttctttct gcgcgtaatc tttttccctg taaacaaaaa aaaccaccgc
     3181 taccaa
//
