LOCUS       NZ_CP065844             4096 bp    DNA     circular CON 30-NOV-2023
DEFINITION  Klebsiella quasipneumoniae strain KqPF9 plasmid p3, complete
            sequence.
ACCESSION   NZ_CP065844
VERSION     NZ_CP065844.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17016746
            Assembly: GCF_016066695.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4096)
  AUTHORS   Venkitapathi,S., Sharon,B.M., Ratna,T.A., Arute,A.P., Zimmern,P.E.
            and De Nisco,N.J.
  TITLE     Complete Genome Sequences of Six Uropathogenic Klebsiella pneumoniae
            Strains Isolated from Postmenopausal Women with Recurrent Urinary
            Tract Infection (rUTI)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4096)
  AUTHORS   Sharon,B.M., Venkitapathi,S., Ratna,T.A., Arute,A.P., Zimmern,P.E.
            and De Nisco,N.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-DEC-2020) Biological Sciences, University of Texas at
            Dallas, 800 W Campbell Road, Richardson, TX 75080, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v.0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 359x, 153x
            Sequencing Technology             :: Illumina NextSeq, ONT MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/29/2023 22:33:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,597
            CDSs (total)                      :: 5,474
            Genes (coding)                    :: 5,326
            CDSs (with protein)               :: 5,326
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 60 of 148
            Pseudo Genes (incomplete)         :: 95 of 148
            Pseudo Genes (internal stop)      :: 37 of 148
            Pseudo Genes (multiple problems)  :: 37 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP065844.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4096
                     /organism="Klebsiella quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KqPF9"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:1463165"
                     /plasmid="p3"
                     /geo_loc_name="USA: Dallas, Texas"
                     /lat_lon="32.77 N 96.79 W"
                     /collection_date="2018-05"
                     /collected_by="UT Southwestern Medical Center/ UT Dallas"
     gene            join(3919..4096,1..68)
                     /locus_tag="I8N79_RS28120"
     CDS             join(3919..4096,1..68)
                     /locus_tag="I8N79_RS28120"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_053065898.1"
                     /translation="MQPQTAVHDGLPGINARTVGAVIVWLEPFAGQQLRVRDQEVQLQP
                     PLVPVLNPQHAVLVFIESGHQNPLEARHQRFTLPGR"
                     /name="hypothetical protein"
     gene            complement(250..573)
                     /locus_tag="I8N79_RS27720"
                     /old_locus_tag="I8N79_27720"
     CDS             complement(250..573)
                     /locus_tag="I8N79_RS27720"
                     /old_locus_tag="I8N79_27720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001555769.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGSSGLDRVQVVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1212..1370
                     /locus_tag="I8N79_RS28285"
     CDS             1212..1370
                     /locus_tag="I8N79_RS28285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032670878.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHEKSLLAAAISNWRYTRDKL
                     RGLEVWA"
                     /name="hypothetical protein"
     gene            complement(1607..1876)
                     /locus_tag="I8N79_RS27725"
                     /old_locus_tag="I8N79_27725"
     CDS             complement(1607..1876)
                     /locus_tag="I8N79_RS27725"
                     /old_locus_tag="I8N79_27725"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_079839079.1"
                     /translation="MNGQEFRLLLTEHGEKEAVLLFGKKSFVAVPDTQNLYGGCYYLYL
                     EDAHKNELLIELNESDLYPGGAIELQHNGGRKIHCEILKVRWSR"
                     /name="hypothetical protein"
     gene            1958..2191
                     /locus_tag="I8N79_RS27730"
                     /old_locus_tag="I8N79_27730"
     CDS             1958..2191
                     /locus_tag="I8N79_RS27730"
                     /old_locus_tag="I8N79_27730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008461706.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_001036746.1"
                     /translation="MNKKTLLAAMMVALVTFAAAGCSSNQEIKTTDDRTIVTDGKPKVD
                     SDTGLVSYKDAHTGRTEQINRDKITNMSELDN"
                     /name="YgdI/YgdR family lipoprotein"
     gene            2213..2440
                     /locus_tag="I8N79_RS27735"
                     /old_locus_tag="I8N79_27735"
     CDS             2213..2440
                     /locus_tag="I8N79_RS27735"
                     /old_locus_tag="I8N79_27735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_000719360.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPTES
                     DSGLLGYKDANGVKQQINKADVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            complement(2970..3179)
                     /locus_tag="I8N79_RS27740"
                     /old_locus_tag="I8N79_27740"
     CDS             complement(2970..3179)
                     /locus_tag="I8N79_RS27740"
                     /old_locus_tag="I8N79_27740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014538403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_001632067.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWESAFAEWRTMCGLMQRENA
                     ALSERVTDLSTQVLSLSEQLRRLS"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(3183..3668)
                     /locus_tag="I8N79_RS27745"
                     /old_locus_tag="I8N79_27745"
     CDS             complement(3183..3668)
                     /locus_tag="I8N79_RS27745"
                     /old_locus_tag="I8N79_27745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012565228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_198073017.1"
                     /translation="MNSLLTLAKDLEQKSKVQQQTTGEMLKAAFSEHEKSVRAELNESE
                     KRINAAIHDHDRMLSSAMSQRTKGMLRMVSQTWLTIVLVSVLLIASSAGILWWQGQQIL
                     DNYTTIREQKSTQAMLSERNSGVQLTTCGEERRRCVRVNPDAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(<3703..4035)
                     /locus_tag="I8N79_RS28125"
                     /pseudo=""
     CDS             complement(<3703..4035)
                     /locus_tag="I8N79_RS28125"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     Typing          complement(682..760)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="5.8899999999999995e-34"
     Typing          836..1324
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.747"
                     /coverage="94.0"
                     /evalue="7.82e-151"
     Typing          complement(254..573)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.196"
                     /coverage="100.0"
                     /evalue="2.88e-62"
     Typing          complement(2861..4095)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.515"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 ttatcgagtc cgggcatcag aacccgctcg aagctcgcca tcagcgtttc acgctgcccg
       61 ggcggtaagt cctgttcggc aaaggacagc accccggagg tgtacttttt ggcgtagggc
      121 gaggcgtcga taagctcccg gacttcctcc ggcttcccct gaagaacgct ggcaccgtcg
      181 cgctggcggt ctttccccag cagataatca accgggccgg caccgcctcc gcgtccccgg
      241 ggatgaaact taacgatcat cgtcagcccc cttttccagt acggcatgcc gcagccgctc
      301 gagtccggca tcgatggcca tcagcgcggc gacgacctgc acgcggtcga gaccgctact
      361 gccaccggcg ttaacctggc gggcaatctg gttgaggttg ttccccatgc cggcaagctg
      421 acgaagcagc gccggcgaga tcgagggaag tttgccggcc cgggcgggct tctcgtccag
      481 gcacgtctgc cgcatccagg ccgcgagctg tttaccgtcg cagcgttcca gcagacggcg
      541 gtgctcatct tctgttaccc acatcgtgag cattttgctg cgtttgtctg ccaatccggc
      601 ctcctgataa cgccgggacg ggcgggaaat cttttcccgg tcggcgcggt gttgggcaag
      661 ccgcaggcgc gtcagtggca tttagcgggt ttcggggcgc agccctgaac cagtcacgta
      721 gcgctagcgg agtgtatact ggcttactat ggtggcacga cgggaatcgg gatgaaatag
      781 tcagtcatga aaactgtgag atgaggctca ggtgcgtaag aggctgatgc ctgtcccggt
      841 ggatattccg cttcctcgct cactgactcg ctacgctcgg tcgttcggct gcggcgagcg
      901 gtacggactc acggataaag acgtggcggg gaaatacgtg aatgcaggag gggaagaaag
      961 gatgcgccgc tgccggtttt ccataggctc cgcccccctg acaagcatca cagaatctga
     1021 cgctcaaatc agtggtggcg aaacccgatg cggcttaaag ataccaggcg tttccccctg
     1081 atggctccct cgtgctcccc cgcattcctg cctttcggtt taccggtgtc attccgctgt
     1141 tatggccgcg gtttctcatt ccacgcctga cactcagttc cgcgaaggca gttcgctcca
     1201 ggattgactg tatgcacgaa ccccccgttc agtccgactg ctgcgcctta tccggtaact
     1261 atcgtcttga gtccaacccg gaaagacacg aaaaatcgct actggcagca gccattagta
     1321 actggaggta tacgagagac aaattaagag gtcttgaagt atgggcctga gagaggctac
     1381 actgaaagaa cagttttggt ttctgcggtc tcgtataccc agttacctgg ttaagcagtt
     1441 ccccaactga cttaaccttc gatcaaacca cctccccagg tggttttttc gttttcagag
     1501 caagagatta cgactgtaac gacaggatca caagaagatc atttactcag agagactaac
     1561 taccactatg tttgcctatc aacatactta ggaaacatta cttgagttaa cgactccacc
     1621 ttacttttag tatctcgcaa tgaatcttcc gaccgccgtt gtgttgaagt tctattgcgc
     1681 caccggggta taaatcactt tcgtttaact caattaaaag ctcgttcttg tgagcatcct
     1741 ctaaataaag gtaataacac ccaccataaa ggttctgcgt atctggcacg gcaacaaaag
     1801 atttctttcc gaacagtaaa acagcctctt tttctccatg ctctgtcagc aataatcgaa
     1861 attcttgtcc attcaatcct cttttcgcat gaaaaaacga cctatactta gatggttagt
     1921 gaccatatcc actttacctt taagcaggga acctattatg aataaaaaaa cgctgttggc
     1981 ggccatgatg gtcgcgttgg tgacctttgc cgctgctgga tgttcttcaa accaagaaat
     2041 aaaaaccaca gatgatcgca ctatcgttac agacggcaaa cccaaagttg acagtgatac
     2101 gggattagta tcctacaaag atgcccatac aggccgaacc gaacagatca accgtgacaa
     2161 aattaccaac atgagtgaac tagacaactg atacggataa aaggagctgg ctttgaaaaa
     2221 gatttttgtt tcagtgttcg cagcggcagt tgcgctttca gccctaaccg gctgcacgcg
     2281 cacaagctat gccatccaca ccaacgacgg gcgtacaatt gtcagcgacg gcaagcctac
     2341 agaatcagac tcaggcctgc tgggctataa agacgcaaat ggtgtcaaac agcagatcaa
     2401 taaagccgac gttaaagaag tctctgaaat tccgcattga ggcatcgctc tctccgaaaa
     2461 gggccgctaa tgcggccctt ttctttatct gccccaacaa caggcaaaaa aagcccccgc
     2521 tgggggccaa atacctgcag tggctggata gtactgcatt cctgatgaag gagacgaata
     2581 agtatgggcc ggatttttgc gtctgcaggc tcggtcgcca caatttttcc gtacccgcca
     2641 ggcatcatgc ttttaccata acatcccttg cccgcacctc tccggacggg ttcagcgcga
     2701 atgcggcgtc agtcctgcaa aaccgacagt aaaccacccc gcaaaccgtg cattctgcgc
     2761 ctgataaatc tcacccgact gcatagccat gcagccgggt gaatggcacc gggtttcggc
     2821 gcagatcctc aatgaaagcc ccgttttatc cggttatcac agcgacggac cgtcatactc
     2881 ctgctgacgc tgcgatcgtt ccagctccag cgctttctgg tgctgcgctg cgcgctcctg
     2941 ctcccggtgt gcctcgatgt cgttcagcct tacgacaacc ggcgcagctg ctcgcttaaa
     3001 ctcagcacct gcgtgctcaa gtccgtgacg cgctcgctca gcgctgcgtt ctcccgttgc
     3061 ataagaccac acatcgtccg ccattccgcg aaggcgctct cccactcgtc cagccttttc
     3121 gagtagtcct gctgtagctg ctctaatgcg ctcagcaact gtttttccag ttccgtcatg
     3181 tgctatttcc ccgccagtat catccagctc gaatcctctc cgaaccgtcc cgcgtccggg
     3241 ttcaccctca cgcagcggcg tcgttcctct ccgcaggtcg tgagctgcac gccgctgttc
     3301 ctctcggaca gcatggcctg cgtgctcttc tgctcccgga tggtcgtgta attgtcgagt
     3361 atctgctgcc cctgccacca tagaatgccc gcacttgagg ctatcagcag cacggagacc
     3421 aggacgatgg tcagccacgt ctggctgacc atgcgcagca tccctttcgt acgctggctc
     3481 atggctgagg acagcatccg gtcgtggtcg tggatggcgg cgttgattct cttctcgctt
     3541 tcgttcagtt ccgctctgac agacttctcg tgctcgctga atgcggcttt cagcatctcg
     3601 ccggtagtct gctgctgcac tttcgatttc tgctctaagt ccttcgccag cgttaaaaga
     3661 ctgttcatag atggctccct tcagtcggat gtttcgcccc ccgtccgggt cggcaatgct
     3721 gatgctgctt tttgtggtgc gaaccacctc aaaacctgcg ctttccagcg cctcagtgac
     3781 gtcctgacgc gttttcagct ccccggacga ggctaaggcc agtaaacccc gcgtaatcgc
     3841 ctgagcggct tcctgcttcg tttccggcag cgcggacggc gtgaccagtg cccgccggtt
     3901 ttccggcgcg ttcgggtcgt gcagccccag actgccgttc acgatggtct gccaggcatc
     3961 aatgcgagga cggtcggcgc ggtcatagta tggctggagc cgtttgccgg tcagcagctc
     4021 cgtgttcggg atcaggaagt tcagctccag ccgccccttg tcccggtgct caacccacag
     4081 cacgctgtac tggtct
//
