LOCUS       NZ_CP065843             4730 bp    DNA     circular CON 30-NOV-2023
DEFINITION  Klebsiella quasipneumoniae strain KqPF9 plasmid p2, complete
            sequence.
ACCESSION   NZ_CP065843
VERSION     NZ_CP065843.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17016746
            Assembly: GCF_016066695.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4730)
  AUTHORS   Venkitapathi,S., Sharon,B.M., Ratna,T.A., Arute,A.P., Zimmern,P.E.
            and De Nisco,N.J.
  TITLE     Complete Genome Sequences of Six Uropathogenic Klebsiella pneumoniae
            Strains Isolated from Postmenopausal Women with Recurrent Urinary
            Tract Infection (rUTI)
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4730)
  AUTHORS   Sharon,B.M., Venkitapathi,S., Ratna,T.A., Arute,A.P., Zimmern,P.E.
            and De Nisco,N.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-DEC-2020) Biological Sciences, University of Texas at
            Dallas, 800 W Campbell Road, Richardson, TX 75080, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v.0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 359x, 153x
            Sequencing Technology             :: Illumina NextSeq, ONT MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/29/2023 22:33:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,597
            CDSs (total)                      :: 5,474
            Genes (coding)                    :: 5,326
            CDSs (with protein)               :: 5,326
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 60 of 148
            Pseudo Genes (incomplete)         :: 95 of 148
            Pseudo Genes (internal stop)      :: 37 of 148
            Pseudo Genes (multiple problems)  :: 37 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP065843.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4730
                     /organism="Klebsiella quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KqPF9"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:1463165"
                     /plasmid="p2"
                     /geo_loc_name="USA: Dallas, Texas"
                     /lat_lon="32.77 N 96.79 W"
                     /collection_date="2018-05"
                     /collected_by="UT Southwestern Medical Center/ UT Dallas"
     gene            complement(join(4457..4730,1..149))
                     /locus_tag="I8N79_RS27685"
                     /old_locus_tag="I8N79_27685"
     CDS             complement(join(4457..4730,1..149))
                     /locus_tag="I8N79_RS27685"
                     /old_locus_tag="I8N79_27685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_198073014.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTGVNSVGLHDLQHRIALLEAENDGLKWAVKA
                     RDEHIDSLRQAMQLLEHKHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(149..340)
                     /locus_tag="I8N79_RS27690"
                     /old_locus_tag="I8N79_27690"
     CDS             complement(149..340)
                     /locus_tag="I8N79_RS27690"
                     /old_locus_tag="I8N79_27690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_198073015.1"
                     /translation="MTKQQKTALNMVKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            756..869
                     /locus_tag="I8N79_RS28280"
     CDS             756..869
                     /locus_tag="I8N79_RS28280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071785923.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHDLSPLAAATGN"
                     /name="replication initiation protein"
     gene            1277..1948
                     /locus_tag="I8N79_RS27695"
                     /old_locus_tag="I8N79_27695"
     CDS             1277..1948
                     /locus_tag="I8N79_RS27695"
                     /old_locus_tag="I8N79_27695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_227680695.1"
                     /translation="MLIVILSLYYTITEPFKSELIKNLSYSLIATFIFDTGLNFSKENI
                     TKSIVSRKWHNSLYFAFERLRAIHEIFTAQNKLEITKELASDMASSILMENGAVISKKH
                     IKTMWNPSSGEPLTYQGIVIKEGDNLYFASMMFIRDDYEFLHSIYFDENIFLSFPQLLK
                     PAQRCYRSLAMIQHNINSKQKFNVTKKSLERDLINYLELRSTLLMKMEDVLGHYEQRAP
                     Q"
                     /name="hypothetical protein"
     gene            2269..2700
                     /locus_tag="I8N79_RS27700"
                     /old_locus_tag="I8N79_27700"
     CDS             2269..2700
                     /locus_tag="I8N79_RS27700"
                     /old_locus_tag="I8N79_27700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005709514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_086073960.1"
                     /translation="MDWYDVKWFFGDVCDSVSEVAGNIYDTAADGVAAVTDFIEENPKT
                     SIAIGALVGIATAGIAAPAIAATIGATGALGTTAGGTVIANLSGAALSSSSLAALGGGS
                     IAAGGAGMAGGTCVVAAGGGVVAGSVSAGGVAATKAIKS"
                     /name="hypothetical protein"
     gene            complement(2788..3132)
                     /locus_tag="I8N79_RS27705"
                     /old_locus_tag="I8N79_27705"
     CDS             complement(2788..3132)
                     /locus_tag="I8N79_RS27705"
                     /old_locus_tag="I8N79_27705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014542127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032431017.1"
                     /translation="MANSFNVTIAEAALWSLQDAESFKSNYTDSVQAALWADDLLASSI
                     KAISQDPDRYRYNAMLADKGISIRERLDPDNQYRCLYDFDEQNGVIEILLFVSTKQDLE
                     KMLYRYLVVK"
                     /name="hypothetical protein"
     gene            complement(3147..3416)
                     /locus_tag="I8N79_RS27710"
                     /old_locus_tag="I8N79_27710"
     CDS             complement(3147..3416)
                     /locus_tag="I8N79_RS27710"
                     /old_locus_tag="I8N79_27710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012822261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_024167138.1"
                     /translation="MSITMSQKSAREGLGNPELFQGGVYVTKNGLAELFVQTAEEREAE
                     LRERERERQSNALLKLVMAAKREIKNGRGMSPEDAMRRLREART"
                     /name="hypothetical protein"
     Typing          462..869
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.132"
                     /coverage="99.0"
                     /evalue="5.8799999999999995e-176"
ORIGIN
        1 ataagctctg aagtatcaat aactttaata gccttcccgt gctttacaac agaggtgtaa
       61 cttaacttcc cactgttaat catcttgtaa attgtggggc gactaacctt aacaagccgt
      121 gccgcttcac taatagacac tctggccatc agttaccatc ctgtaattca tccagtctcg
      181 aggacagtgt acggaaaaga tgctccgcat catcgtggag tttctcacaa aggtcggcct
      241 caacatcaag atcaagctcg ttaagcttct ccagcaggag cagagactga ttctggatga
      301 atttaaccat gttcagcgct gttttctgtt gtttcgtcat aagaggcctc agagcgtcag
      361 tgctcagtgt agggatgttc tcttttccgc ttcctcgctc actcagtcgc tacgctcctg
      421 ccgttcggct gcggcgagcg gcaggagcat gcgtagaaac gctcgagaaa accgagcaat
      481 cgcatggagg aaagaaggaa aggccgcgca gcggccgttt ttccataggc tccgcccccc
      541 tgacaagcat cacagaaact gacgctcaaa tcagtggtgg cgaaacccga caggactata
      601 aagatatcag gcgtttcccc ctgatggctc cctcgtgcgc tctcctgttc ctgcctttcg
      661 gtttaccggt gtcattccgc tgttatggcc gcgtttatct cattccacgc ctgacactca
      721 gttccgggta ggcagttcgc tccaagctgg actgtatgca cgaacccccc gttcagtccg
      781 actgctgcgc cttatccggt aactatcgtc ttgagtccaa cccagaaaga cacgacttat
      841 cgccactggc agcagccact ggtaactgat ttagaggagt tagtcttgaa gttatgcgcc
      901 agttaaggct aaactaaacg aacagttttg gtgactgtgc tcctctaact agccagttac
      961 ctaggttcaa cgagcgccaa ctcttagaac cttcgaaaaa accgccctgc aaggcggttt
     1021 tttcttatta gcagggaaga gattacgatg acttgctgaa gatctcaaga aaatcattca
     1081 tcaccgatat cgaggagtga taagattggt taactttata ttattcatta tattattcac
     1141 atacacatgt attttttgtt tcaccccccc gaggagacaa tataaatcaa tatctctaat
     1201 tcctcaaaaa ataaaagcac cattaaatag atatcgttta tacatatatt catctggtgc
     1261 aatacgacaa tcactaatgt taattgttat attatctctc tattatacaa ttacagaacc
     1321 atttaaatca gaattaatta aaaacttatc ctattcatta atcgcaactt ttatttttga
     1381 caccggctta aacttcagca aagaaaatat aacaaaaagt atagtatcca ggaaatggca
     1441 caattcttta tactttgcat ttgaaagatt aagagcaata catgaaatat tcacagcaca
     1501 aaacaaacta gagatcacaa aagaactagc cagcgacatg gcgtcatcca tactaatgga
     1561 aaatggagct gttatatcta aaaaacacat aaaaacaatg tggaaccctt cttcaggaga
     1621 accacttacg tatcaaggca tagtaataaa agaaggggat aacttatact ttgcgtctat
     1681 gatgttcatc agagatgatt atgaattcct acacagtatt tattttgatg aaaatatatt
     1741 tctctccttc cctcaactac taaaaccagc ccaaagatgt taccgatcac tagcaatgat
     1801 acagcataat ataaacagca aacaaaaatt taacgtcaca aaaaaatcat tagaaagaga
     1861 tctaattaat tatttagaac tgagatctac attattaatg aaaatggaag atgttcttgg
     1921 ccactatgaa caaagagcac cacaataata tcaatgtcac tttcatcttt aaatttaaaa
     1981 aaggcaatga gataagtaag attgaacata aagaaatgat tgtgcataaa taaaaaacgt
     2041 ttggcgttcc ccccccccct gaaagctatt tgtagcaact ttcaatccaa tctatcgaac
     2101 catcgaagaa tttaccaaca taaccagttc cactcaccat aattatgcat gggcctgcga
     2161 tcattttatt gcctttaaaa aacattgctt ttaatatgtg tattatatct tccgtgcaat
     2221 caaaaaagat taattactta ataaatcata tagttaagag ggtagcatat ggactggtac
     2281 gacgttaaat ggtttttcgg agacgtctgt gactctgttt cagaggtggc aggcaatatt
     2341 tacgatactg cagctgatgg ggtagcggct gtaactgatt tcattgaaga aaatccaaaa
     2401 acatccattg cgataggagc ccttgtaggt attgcgacag caggcatagc agctccggca
     2461 atagcggcaa caattggagc aaccggagcg ctaggaacta cagctggagg taccgtaata
     2521 gcaaacttaa gtggagcagc attatctagc tcgtctttag cagcgttggg tggaggttcc
     2581 atcgcagctg gaggagccgg tatggctggc ggaacatgtg tagtagccgc gggaggagga
     2641 gtggtcgctg gaagcgtttc tgctggagga gtggcagcaa caaaagcgat aaaaagctaa
     2701 caagcttcca tttaccataa cgtcgacatc ttaaagtttc taccatataa aaagcccact
     2761 ataaaagagg gcttttgcat ttaacatcta tttaacaaca agatatctgt aaagcatttt
     2821 ctcaagatct tgcttagtgc taacaaaaag caggatctca atgacaccat tttgttcatc
     2881 aaaatcatat aaacaacgat actggttatc ggggtccaaa cgctcacgaa tcgatattcc
     2941 tttatcagcc aacatagcat tgtagcgata acgatcagga tcttgagaaa tggcctttat
     3001 cgatgaagcc aaaagatcat cagcccataa cgcagcttga acactatccg tgtagtttga
     3061 tttaaaggat tctgcatcct gcagagacca tagtgccgct tccgcgatcg ttacattgaa
     3121 tgaatttgcc aagttggctc cttatattaa gttcgcgctt cacgtaacct ccgcatagca
     3181 tcttcggggg acattccacg accatttttt atctctctct ttgcagccat gactagcttc
     3241 aaaagagcat ttgattgccg ttctctttct ctctcacgca gctcggcctc tctctcttct
     3301 gcggtctgca cgaacagctc tgctaaacca tttttcgtaa cataaacgcc tccttggaac
     3361 agttcagggt tgccaagacc ttcacgggct gacttctgag acatagttat agacatactt
     3421 atacctttaa ttaaaacagc cacttacacg caagattaag cataagcgac tagatcctga
     3481 atgaaaaaga ggtcaaaaag acctcacatc ttgctgccac ttagggtgaa tggcagttat
     3541 attgtatcaa aactcacagg ggagtacaaa tttatcataa atatatacac caccattcaa
     3601 atataagatt ctggagcttc gaccaacctc ctattaaacg aaaattacgc gcatcagtaa
     3661 ggcatcccca gctcaggaac aatccccatt cttctactat cgagattttt tcgtctgtta
     3721 tttaacataa agccatgatt gtacgcaccg ccagaacggc ctcagggcgt ttctgacggg
     3781 aaaccgataa aacaggcaac aaaccacccg aaaacccgcc agaaacgcgc aggctccgtt
     3841 tttacggtat gcatgagtat gcgcgcaagt gcatagcgcg gaaattcacg ccattcagcc
     3901 agggtaagtc ctgtttccgg cgttcttctg atccgaaaac ggtgaacggg gacgcaattt
     3961 attgcgtggc cgtgaggcgt tgccggcgca gccggaaaac cggttttcag cacgttcagg
     4021 aatcgggttc gtcgacggcc ggcaatcacg ttatggcaag tcgccggacg actcaccaca
     4081 cgattcaccg gcgattcgaa tcgtgaattg aatcaagagt caccatgaac aaaaaacgcc
     4141 caaattgatg aattgaatca agagtcgatt catcataact acatgataat aaagcgtgat
     4201 tcacatatga atcgtgggca attcgtaaac gattcgccat agagtcgtcc acgacttgga
     4261 tctgcacttt gtaacacatc actgcacatt aatttttcat taacaaattg ttttaaataa
     4321 ggaatctgca aaattttaat tttgcgtagt gtgtgggtat ttttagtggt gaggagcgtt
     4381 cagagatctg gcgatttttt ggaaggttca ggaactcccc ggaatggccg gagaggaaaa
     4441 ctgaagcatg acggggtcag gattttttcc agaatttcca ccacggggaa tggggtggtg
     4501 aagaaggttc gtgcttgtgc tccagaagct gcatagcctg acgaagggaa tcaatatgct
     4561 catctcgagc cttaacagcc catttaagac catcgttttc agcttctagt aaagcgattc
     4621 tatgttgtaa atcatgtaaa ccaacgctgt taacacctgt agattctgcg tcacttttta
     4681 catcatattt tacagtatcg atgacaccat caagagagcc aaacactcta
//
