LOCUS       NZ_CP065661             1028 bp    DNA     linear   CON 15-FEB-2024
DEFINITION  Staphylococcus epidermidis strain FDAARGOS_913 plasmid unnamed7.
ACCESSION   NZ_CP065661
VERSION     NZ_CP065661.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13450443
            Assembly: GCF_016026915.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus epidermidis
  ORGANISM  Staphylococcus epidermidis
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 1028)
  AUTHORS   Jackson,S., Kralj,J., Tallon,L., Sadzewicz,L., Zhao,X., Boylan,J.,
            Ott,S., Bowen,H., Vavikolanu,K., Mehta,A., Aluvathingal,J.,
            Nadendla,S., Yan,Y. and Sichtig,H.
  TITLE     FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS):
            Supporting development and validation of Infectious Disease Dx tests
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1028)
  AUTHORS   Jackson,S., Kralj,J., Tallon,L., Sadzewicz,L., Zhao,X., Boylan,J.,
            Ott,S., Bowen,H., Vavikolanu,K., Mehta,A., Aluvathingal,J.,
            Nadendla,S., Yan,Y. and Sichtig,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2020) Center for Devices and Radiological Health,
            US Food and Drug Administration, 10903 New Hampshire Avenue, Silver
            Spring, MD 20993-0002, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. 1.7
            Genome Coverage                   :: 2034.24x
            Sequencing Technology             :: Pacbio; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/15/2024 04:08:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,517
            CDSs (total)                      :: 2,433
            Genes (coding)                    :: 2,341
            CDSs (with protein)               :: 2,341
            Genes (RNA)                       :: 84
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 92
            CDSs (without protein)            :: 92
            Pseudo Genes (ambiguous residues) :: 0 of 92
            Pseudo Genes (frameshifted)       :: 58 of 92
            Pseudo Genes (incomplete)         :: 47 of 92
            Pseudo Genes (internal stop)      :: 30 of 92
            Pseudo Genes (multiple problems)  :: 33 of 92
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP065661.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..1028
                     /organism="Staphylococcus epidermidis"
                     /mol_type="genomic DNA"
                     /strain="FDAARGOS_913"
                     /culture_collection="ATCC:12228-1"
                     /db_xref="taxon:1282"
                     /plasmid="unnamed7"
                     /collected_by="NIST<ATCC"
     gene            <1..379
                     /locus_tag="I6G70_RS12510"
                     /old_locus_tag="I6G70_12510"
     CDS             <1..379
                     /locus_tag="I6G70_RS12510"
                     /old_locus_tag="I6G70_12510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011117528.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0000150 - DNA strand exchange activity [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="WP_197931528.1"
                     /translation="GLNFEIGGLPNINTGNKLMDKALTDMLINLLGYVAENERAYIKER
                     QRDGIELAKKQGRFKGKPKKYSPHSKDKYGRYIYNQIVEDLNSGMSYNAVRLKHEVGMS
                     TVHRIAHEIEEDNNGSKYSKK"
                     /name="recombinase family protein"
     gene            354..731
                     /locus_tag="I6G70_RS12515"
                     /old_locus_tag="I6G70_12515"
     CDS             354..731
                     /locus_tag="I6G70_RS12515"
                     /old_locus_tag="I6G70_12515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002487432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_164924960.1"
                     /translation="MDQSIVKNKEDYVKDTEQIRHNISTTQERFNKEKNKLANHQHKFD
                     KMQLEFTNDMSMKLLDKVSSGEIDVKDLPNIKSYLFDDIGSLDVSSEVPVSSSDTDETA
                     QSTSSHSDVDHNPFADANRHS"
                     /name="hypothetical protein"
ORIGIN
        1 tggcttaaat tttgaaatcg gtgggctacc caacatcaac acgggtaaca aactgatgga
       61 taaagcttta acagatatgt taataaactt attaggttat gttgcggaaa atgaacgagc
      121 gtacatcaaa gagcgtcagc gtgatggtat agagcttgct aaaaagcaag gacgctttaa
      181 aggtaaacca aagaagtata gtccacattc aaaagataag tacgggcgct atatttacaa
      241 tcaaattgtt gaagatttaa acagtggtat gagttacaac gctgtaaggt taaaacatga
      301 agttggtatg agtacagtac atcgtatcgc tcatgaaatt gaggaggata ataatggatc
      361 aaagtatagt aaaaaataaa gaagattatg tgaaagatac ggaacagata cgacacaata
      421 tctctacaac acaagagcgt ttcaataaag aaaagaacaa acttgctaac catcaacaca
      481 agtttgataa aatgcaactt gaattcacta atgatatgtc tatgaagttg ttagataagg
      541 ttagttccgg tgaaattgat gttaaggatt tacccaatat caaatcatat ttatttgatg
      601 atattggttc acttgatgta tcaagtgagg ttcccgtttc atcatctgat acagatgaaa
      661 cggcacagtc tacatcatca cattctgatg tagaccataa cccttttgct gacgctaacc
      721 gtcatagcta aaaggtatca catcaccggc attgtgccgg tgatgttgca caccaaaggt
      781 gtgtactcgc tagagagtta agagagagcg cagcgtctct cttacaagct cccaaatgtt
      841 tacattggga ctgcttgccc cagatttata aggggtgcta tgcgttgagc gtagtgccct
      901 gcaataaatc gcatttgacg tgttgcaatt gtcgcacatt tttttttgcg acgcaacacg
      961 tattttaata cacaattagc ccactattat tgggcgtgta ttaaaatcaa tctttttgaa
     1021 tttaaagg
//
