LOCUS       NZ_CP065201             1435 bp    DNA     circular CON 09-FEB-2024
DEFINITION  Staphylococcus aureus strain DG36 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP065201
VERSION     NZ_CP065201.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16872357
            Assembly: GCF_015767475.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 1435)
  AUTHORS   Ji,X.
  TITLE     Comparative Analysis of Genome, Fitness and Virulence of MRSA ST398
            and ST9 Isolated in Both China and Germany
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1435)
  AUTHORS   Ji,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2020) College of Veterinary Medicine, China
            Agricultural University, 2 Yuanmingyuan West Road, Beijing 100193,
            China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 60.0x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/09/2024 05:41:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,714
            CDSs (total)                      :: 2,633
            Genes (coding)                    :: 2,559
            CDSs (with protein)               :: 2,559
            Genes (RNA)                       :: 81
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 36 of 74
            Pseudo Genes (incomplete)         :: 30 of 74
            Pseudo Genes (internal stop)      :: 18 of 74
            Pseudo Genes (multiple problems)  :: 10 of 74
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP065201.1.
            Bacteria and source DNA available from Veterinary Pharmacology and
            Toxicology Laboratory.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1435
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="DG36"
                     /isolation_source="pig farms"
                     /host="pig"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed2"
                     /geo_loc_name="Germany"
                     /lat_lon="52 N 13 E"
                     /collection_date="2008-05-01"
                     /collected_by="Xing Ji"
     gene            248..1144
                     /locus_tag="I3K83_RS13495"
                     /old_locus_tag="I3K83_13495"
     CDS             248..1144
                     /locus_tag="I3K83_RS13495"
                     /old_locus_tag="I3K83_13495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000532202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_219726469.1"
                     /translation="MSRPKMIYLEDEKTILDFHKNLTGGRLVVYLTYDQSNDRFGPLKN
                     TYDLKVKSYDNGVYKVCWYKNSRKKSNTSIHQKFNLEKRLKMSKEELEKLEEEQRKSHI
                     FEVKNLIKDYVLCNHFDMFWTLTFDPKKYGGEISDDLAYELMSKFLHNMRRRHKRKSDK
                     PFNYIAVPERHKSGQIHWHMITGNVEPNLVDSGKTYKKQKIYNCTDWQYGFTNVQKVRS
                     KSKVSSYMTKYITKDLLYSPVRKHKAKYWSSKGLKLPKVYAGNYSDLSSILPLYNENGE
                     LKPTHSNDVCDIWLFKV"
                     /name="hypothetical protein"
ORIGIN
        1 gttccatgtt caaaaggaaa ttggaataaa taaaaaagcg ctacaggaat agacctgtaa
       61 cgctctcagt gctatattat agctaaaaca aataaaaaga gttacacact ccccgaccaa
      121 agtttgttgt gtaacaatga gctttatcaa cttgtatatt actgtatcag gtaaataaaa
      181 tcaagttgat aaaattggat gtgttgtaac tctttttcaa aataatttga gaaggagttt
      241 ttttattatg agtagaccaa aaatgattta tttggaagac gaaaaaacaa tcttggattt
      301 ccacaaaaat ttgacgggag gacgtttggt cgtctacttg acatacgacc aaagtaacga
      361 ccgttttgga ccacttaaaa acacatatga tttgaaggtt aaatcctatg ataacggcgt
      421 ttataaggtc tgttggtaca aaaattcacg aaaaaaatct aacacttcta tccaccaaaa
      481 attcaatcta gaaaagcgct tgaaaatgtc aaaagaagag ttagaaaaat tggaagagga
      541 acaacgaaaa agtcatattt ttgaggttaa aaatttaatt aaagattatg tattgtgtaa
      601 tcactttgat atgttttgga cattaacatt tgatccgaaa aaatatggcg gagagattag
      661 tgatgattta gcttatgagc ttatgagtaa atttttgcat aatatgagac ggagacataa
      721 acgtaaaagt gataagccgt ttaactatat agcagtgcca gaacgtcata agagtggtca
      781 aatacattgg catatgataa ctggtaatgt agaacctaat ttggttgata gtggtaaaac
      841 atataaaaag cagaaaattt ataattgcac agattggcaa tatggattta cgaatgttca
      901 aaaagtgcgt tcaaaatcaa aagtgagtag ttacatgact aaatatatta ctaaagattt
      961 gttatatagt cctgtaagaa agcataaagc taaatattgg agcagtaagg gattgaagtt
     1021 gcctaaggtg tatgcaggta attattctga tttgagtagt attttacctc tgtataacga
     1081 gaatggggaa ttaaagccaa cacatagcaa tgatgtgtgt gatatttggc tatttaaagt
     1141 ttaattggct gtgaggctct gaaaacgcaa ggatggaatc cgtaaagcgt ttgggcagcg
     1201 ctcagagcct cgcagccacg cgtgagcgtt aaacaggtat aaaatcatta gaattatgcc
     1261 taagtgtctc aaatggcttc ctatgcgttg tgagaatgaa attaggatga catttatgcc
     1321 gagaaaactt ttgatatgga aaagggctat atgctattgc gtaagcaaat attggtgagt
     1381 gattgaatgg ggattagacc aagcaagcac caatagaaag gcatatagcc caaag
//
