LOCUS       NZ_CP065200             1475 bp    DNA     circular CON 09-FEB-2024
DEFINITION  Staphylococcus aureus strain DG36 plasmid unnamed1, complete
            sequence.
ACCESSION   NZ_CP065200
VERSION     NZ_CP065200.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16872357
            Assembly: GCF_015767475.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 1475)
  AUTHORS   Ji,X.
  TITLE     Comparative Analysis of Genome, Fitness and Virulence of MRSA ST398
            and ST9 Isolated in Both China and Germany
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1475)
  AUTHORS   Ji,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-NOV-2020) College of Veterinary Medicine, China
            Agricultural University, 2 Yuanmingyuan West Road, Beijing 100193,
            China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 60.0x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/09/2024 05:41:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,714
            CDSs (total)                      :: 2,633
            Genes (coding)                    :: 2,559
            CDSs (with protein)               :: 2,559
            Genes (RNA)                       :: 81
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 74
            CDSs (without protein)            :: 74
            Pseudo Genes (ambiguous residues) :: 0 of 74
            Pseudo Genes (frameshifted)       :: 36 of 74
            Pseudo Genes (incomplete)         :: 30 of 74
            Pseudo Genes (internal stop)      :: 18 of 74
            Pseudo Genes (multiple problems)  :: 10 of 74
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP065200.1.
            Bacteria and source DNA available from Veterinary Pharmacology and
            Toxicology Laboratory.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1475
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="DG36"
                     /isolation_source="pig farms"
                     /host="pig"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed1"
                     /geo_loc_name="Germany"
                     /lat_lon="52 N 13 E"
                     /collection_date="2008-05-01"
                     /collected_by="Xing Ji"
     gene            complement(184..1101)
                     /locus_tag="I3K83_RS13490"
                     /old_locus_tag="I3K83_13490"
     CDS             complement(184..1101)
                     /locus_tag="I3K83_RS13490"
                     /old_locus_tag="I3K83_13490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000532202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_231385369.1"
                     /translation="MSRPKMIYLEDEKTILDFHQKMTGGKLVVYLTYDQLNAQNSPLFD
                     SYDIKVKAYGSGIYKLLRYKNPRKKSNTNFTTLTHCRDYLNMSDKEKQKILEESRKSHL
                     FEVKNLIKDYILCNDFDMFWTLTFDPKRCVEAIEDEYRFKEFGKWLQKMRMRHKRKSDK
                     PFNYIAIPERHKSGQIHWHMVTGNLDPNLVDSGKTFRNQKIYNCTDWEHGFTNVQKMRS
                     KSKVSSYVTKYITKGLLYSPVRKHKKKYFCSKGLALPEVYAGTFEELKYILPVCDKYGA
                     LNPSHSNDVCDIWLFKAGVNWEKA"
                     /name="hypothetical protein"
ORIGIN
        1 atgagaatgc ctctatttgc catttaaacg ctcatatacg cgctatacgc atttttacag
       61 acaaaatgta ccctctggct attaggcttc gcctaaacac gttatacgct cgtctgaccg
      121 ccctgctggg acggctccgc cttgccaatt ccattgacac cctcagacaa cgcttctaac
      181 gtgttacgct ttctcccaat tcaccccagc cttaaacagc caaatatcac acacatcatt
      241 gctatgcgat ggatttaatg caccatactt atcacacaca ggcaaaatgt atttaagctc
      301 ttcaaaagta ccagcgtata cctcaggtaa tgctaagccc ttgctacaaa aatatttctt
      361 cttgtgcttt ctaacaggac tatacagcaa gcctttggta atgtatttag tcacataact
      421 acttaccttt gatttcgacc gcattttttg aacattcgta aatccatgtt cccagtcagt
      481 acagttataa atcttttgat tcctaaaagt ttttccgcta tcaaccagat tagggtctaa
      541 attccccgta accatatgcc aatgtatttg cccgctttta tgacgctcag gtatcgctat
      601 atagttaaat ggcttatcac ttttacgctt atgtctcatc ctcatttttt gaagccactt
      661 cccaaactcc ttaaatctat attcatcctc gatagcttca acacatcttt ttggatcaaa
      721 tgttagtgtc caaaacatat cgaagtcatt acacaaaata taatccttta tcaaattttt
      781 aacttcaaaa agatgacttt ttcggctttc ttctaaaatt ttttgctttt ctttatcact
      841 catatttaag taatctctac agtgcgttaa agtagtaaaa tttgtgttag atttttttcg
      901 cggatttttg taacgcaaaa gcttataaat gccgctacca taagctttga ccttaatatc
      961 ataagagtca aaaaggggtg aattttgtgc gttaagttgg tcgtatgtca agtagacgac
     1021 caacttccct cccgtcattt tttggtgaaa atccaagata gttttttcgt cttccaaata
     1081 aatcattttc ggtctactca taataaaaaa acccctttcc agttttgaaa aagagttaca
     1141 acacatccaa atttgttagc ttgatttttt tcacttgcta aagtaatata caaactaaca
     1201 aacgtattcg ttacaacaca aagtttggtc gctgggtgtt gtagctcttt ttatttggtt
     1261 tagctatata atagcattta gcgcgtgtac ggtctatcca gactagtgca cgtgcttttt
     1321 ttatttattc caatttcctt ttggacatgg aacctttggg ctatatgcct ttctattggt
     1381 gcttgcttgg tctaatccca attcaatcac tcaccaatat tagcttacgc tatagcatat
     1441 agcccttttc catatcaaaa gttttctcgg cataa
//
