LOCUS       NZ_CP065130             4593 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica strain 175 ARN plasmid p175-5k,
            complete sequence.
ACCESSION   NZ_CP065130
VERSION     NZ_CP065130.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16807074
            Assembly: GCF_031036275.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica
  ORGANISM  Salmonella enterica subsp. enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4593)
  AUTHORS   Huang,T.-W.
  TITLE     Whole-genome sequencing of ceftriaxone-resistant Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4593)
  AUTHORS   Huang,T.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-NOV-2020) Department of Microbiology and Immunology,
            School of Medicine, College of Medicine, Taipei Medical University,
            No. 250, Wuxin Street, Taipei 11031, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2019
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 160x
            Sequencing Technology             :: Illumina, Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/01/2023 16:15:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,738
            CDSs (total)                      :: 4,620
            Genes (coding)                    :: 4,493
            CDSs (with protein)               :: 4,493
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 127
            CDSs (without protein)            :: 127
            Pseudo Genes (ambiguous residues) :: 0 of 127
            Pseudo Genes (frameshifted)       :: 55 of 127
            Pseudo Genes (incomplete)         :: 84 of 127
            Pseudo Genes (internal stop)      :: 27 of 127
            Pseudo Genes (multiple problems)  :: 35 of 127
            Pseudo Genes (short protein)      :: 1 of 127
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP065130.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4593
                     /organism="Salmonella enterica subsp. enterica"
                     /mol_type="genomic DNA"
                     /strain="175 ARN"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:59201"
                     /plasmid="p175-5k"
                     /geo_loc_name="Taiwan"
                     /collection_date="2010-08"
     gene            complement(join(4315..4593,1..240))
                     /locus_tag="I0P27_RS23660"
     CDS             complement(join(4315..4593,1..240))
                     /locus_tag="I0P27_RS23660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_308415691.1"
                     /translation="MKERAASTENMLNSEFRKLEESVDKALSLNRQKIRDAISEHTTSV
                     KQQLDTLSTTVSTQLSTTEAELSRQQKNLLWQVIKGRVLFPALTALSVTGGIFLGCWGL
                     IQWQESRIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVLPDGVKGENTWTVGD
                     KNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            complement(<128..970)
                     /locus_tag="I0P27_RS23665"
                     /old_locus_tag="I0P27_23555"
                     /pseudo=""
     CDS             complement(<128..970)
                     /locus_tag="I0P27_RS23665"
                     /old_locus_tag="I0P27_23555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001557251.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(960..1283)
                     /locus_tag="I0P27_RS23670"
                     /old_locus_tag="I0P27_23560"
     CDS             complement(960..1283)
                     /locus_tag="I0P27_RS23670"
                     /old_locus_tag="I0P27_23560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001677263.1"
                     /translation="MLTIRVSDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGHWSSIDRVHVVAALMAIEGELRQLRQAVREQGGR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1346..1537
                     /locus_tag="I0P27_RS23675"
                     /old_locus_tag="I0P27_23565"
     CDS             1346..1537
                     /locus_tag="I0P27_RS23675"
                     /old_locus_tag="I0P27_23565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001677262.1"
                     /translation="MTKQEKTAINMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2207..2356
                     /locus_tag="I0P27_RS23680"
     CDS             2207..2356
                     /locus_tag="I0P27_RS23680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032194431.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPERHVKTPLAAAIGNRLEELVLK
                     LCAG"
                     /name="hypothetical protein"
     gene            2548..3387
                     /locus_tag="I0P27_RS23685"
                     /old_locus_tag="I0P27_23570"
     CDS             2548..3387
                     /locus_tag="I0P27_RS23685"
                     /old_locus_tag="I0P27_23570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001354646.1"
                     /translation="MLTLFIFFVLLIAACFFCFAPPRRGYDRNEIIPYKIKLSINKYRL
                     YIYSSGKVRQYLLFLVILSLYYSIAEPFKSELIKNISYSLMAAFIFDTGLNFSKENITK
                     GVISTRWHNDLYSSFERMKAINKIYYPSNKEINTEGLSKAITSSLFNDDANSFAKRDFR
                     LMWDLSSEKYLSYKEIIIRKGDKLDAVCLRFINDDYKFLVNFNRDEEVFKYFPSIMQPS
                     LKTYRALSRLVNSIKDPSRFKFTTESLEMELLEYLELRNELFNDIEEVMGSYAQRAP"
                     /name="hypothetical protein"
     gene            complement(4075..4308)
                     /locus_tag="I0P27_RS23690"
                     /old_locus_tag="I0P27_23575"
     CDS             complement(4075..4308)
                     /locus_tag="I0P27_RS23690"
                     /old_locus_tag="I0P27_23575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137388.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHAVTQQNNA
                     ILNERVVNLSQQVQLLAGQVDRLSRLFITNNR"
                     /name="MbeD family mobilization/exclusion protein"
     Typing          complement(1626..1710)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          1721..2276
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.907"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(3..970)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(3978..4591)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="99.0"
                     /evalue="2.74e-117"
ORIGIN
        1 tttgatcacc tgccagagca ggtttttctg ctgccgggac agttcggcct ctgtggtgct
       61 gagctgcgtg ctcacggtgg tgctcagcgt atccagttgc tgtttcacgg atgttgtatg
      121 ttcgctgata gcgtctctga ttttctgcct gtttaagctc agtgccttgt ctacagactc
      181 ttctagcttc ctgaactcgc tgttcagcat gttctcggta gaagcggctc gctctttcag
      241 tttcttctcg aagtccgttc ccatttgtaa aagattgctc atacagcgcc ccctttagcc
      301 tgagattccg ccccccctcc gggtcggcaa tactgatact gcttctggtt gtcctcacca
      361 cctcaaaacc tgccgctgtg agcgcctcag tgacatcctg acgcgttttt attgctccgg
      421 cacggtaaag cgcctcaaga ccccgtgtaa tcgcttctgc ggcctcctgt ttcgcttttg
      481 gcagattatt cggtgtgaca agcgtccgtc tgttctccgg tgcgttcggg tcacgcagcc
      541 cgtaatgatg attaaccagc gtctgccagg catttatcct cggcctgtcc gcacggtcgt
      601 agtacggctg gaggcgctta ccgctctgta gttccatgtt cggaatgaca aaattcagtt
      661 cgagccgccc cttatcctgg tgttccaccc agagaatgct gtactggtct ttttcgagac
      721 cgggcataag aacacgctca aagctcgtca tcactctttc gcgttcaccc ggcggtaact
      781 ccttctccgc gaacgacaga acgcctgacg tgtatttctt cgaaaatggc gtggcatcaa
      841 tgagttcccg gatttcttcc gggttacccc ggagcaccgt tgcgccttcg cggttacgct
      901 cccgccccag caggtaatcg accgggccac ttccaccgcc tttccccctg gcatgaaatt
      961 taactatcat cccgtccccc ctgttccctg acagcctgcc gcaactggcg caattcaccc
     1021 tcgatggcca tcagagcggc caccacatga acccggtcaa tcgaagacca gtggccgctg
     1081 ttcaccttcc gggctgtctg gttcagattg ttcccgatgg cagccagatg ccgcagcaat
     1141 ggcggcgata gtgtcggcag ttttcctgtg cgcgcaaccg gctcccccag acagacccgc
     1201 cgcatccatt ctgccagtcg tttaccctcg cagcgttcca gtaaccgggc gtgctcctca
     1261 tcgctaaccc gtattgtgag catcttctcg cgtttcatcg gtatcattcc ccctaaaaaa
     1321 tcccctatta aggagcctta agaccatgac caaacaggaa aaaacagcca ttaacatggc
     1381 ccgctttatc agaagccaga cgctgaccct gctggaaaaa ctcaacgagc tggacgcgga
     1441 cgaacaggca gacatctgcg aatcacttca cgaccacgcc gacgaactct accgtagttg
     1501 cctcgcacgc ttcggcgatg acggtgaaag caactgaaac atgcagctcc cggagacgtt
     1561 cacagcttgc ctgtgagcgg atgccgggag cagacaagcc cgtcagggcg cgtcagcggg
     1621 ttttagcggg tgtcggggcg cagccctgac ccagtcacgt agcgatagcg gagtgtatac
     1681 tggcttaact atgtggcatc agtgcggatt ataagaaaag tgcaccatat gcggtgtgaa
     1741 ataccgcaca gatgcgtaag gagaaaatgc cgcatcaggc gctcttccgc ttcctcgctc
     1801 actgactcgc tacgctcggt cgttcggctg cggcgagcgg tatcagctca ctcaaagacg
     1861 gtgatgcggt tatccacaga atcaggggat aacgccaaaa gaaacatgtg agcaaaaggc
     1921 caggaacagg aagaaggccg cgccgctggc gtttttccat aggctccgcc cccctgacga
     1981 gcatcacaaa aacagatgct caagtcagag gtggcgaaac ccgacaggac tataaagata
     2041 ccaggcgttt ccccctggaa gctccctcgt gcgctctcct gttccgaccc tgccgcttac
     2101 cggatacctg tccgcctttc tcccttcggg aagcgtggcg ctttctcata gctcacgctg
     2161 ttggtatctc ggcccggtgt aggtcgttcg ctccaagctg ggctgtgtgc acgaaccccc
     2221 cgttcagccc gaccgctgcg ccttatccgg taactatcgt cttgagtcca acccggaaag
     2281 acacgtaaaa acgccactgg cagcagccat tggtaaccgt ttagaggagt tagtcttgaa
     2341 gttatgcgcc ggttaaggct aaactgaaag gacagatttg gtggctgtgc tcctccaagc
     2401 cagttacctt ggttcaaaga gttgctgctc tgagaacctt cgaaaagccg ccttgctggg
     2461 cggttttttc gtttacggac aagactacct tcaggatcgt tagatctcaa gacaatcatg
     2521 catagtgagc atacacagga gccgaacttg cttacactgt tcatcttttt tgttttatta
     2581 atagctgcat gtttcttttg ttttgctcca ccacgaagag gatatgacag aaatgagatc
     2641 attccataca aaataaaact atcaataaat aaatatcgcc tttacatata ctcatcggga
     2701 aaggtaagac aatacctttt atttttagtt attttatcac tgtactactc catagcggaa
     2761 ccatttaagt ctgagttaat aaaaaacata tcatattcac tgatggctgc atttattttt
     2821 gatacagggc ttaattttag caaggagaat ataactaaag gagtgatttc aacaaggtgg
     2881 cataatgacc tatattcatc atttgagaga atgaaagcaa ttaataaaat ttactaccca
     2941 tccaacaaag agataaacac agaaggtcta tccaaagcca tcacatcatc tcttttcaat
     3001 gatgacgcga actcgttcgc aaagagagat tttcgcttga tgtgggactt atcttctgaa
     3061 aaatatcttt cctataaaga aataataata agaaaaggcg ataagcttga cgctgtatgc
     3121 ttgagattta taaatgatga ctacaagttt ttagttaatt tcaacagaga tgaagaggtt
     3181 ttcaaatact ttccatctat aatgcaacct tcactcaaaa catatagagc gttatcaaga
     3241 ctagtaaact caatcaaaga tccttctaga tttaagttca cgacagagtc attagaaatg
     3301 gagttactag aatacttaga gttaagaaat gaattattca atgacataga agaagtaatg
     3361 ggtagctatg ctcagagggc accatagttc atgatagccc tcgatagtac ttacttatat
     3421 ttttagagag gtttaagtgt aagtagaggg agtaacacct ggtttttcag catccactcc
     3481 aatgaatgct gacaccgata cgcgataatt ctctttatcg tagcaaaatc atcctccaga
     3541 ttgcggttga gaataggttc atggtgcgca atacgattgc gcagttttct cacgggactt
     3601 gttagcagta atgcttcccc ccggggacaa acgacagaga tatacaacaa aggcccgcaa
     3661 ttaaaatact ccgtatttac cataacgtcg cattgcgcgt accgcttaaa cgcgttcagc
     3721 gcgatcacgg cagcagacag gtaaaaacag caacaaacca cccgaaaaac tgccgcgatc
     3781 gcgcctggta aattttaacc tcatgcatag ttatgcgcga aactgaatga cgatcagttt
     3841 cgcacgttcc agccgtcgaa cggggcaaaa tggggaggtt tggatattgt taatgctaat
     3901 gtacgtacat taacattggc gccatccggg tagggcgtgc cacaaactgg ctcgatttca
     3961 gggggtaccc cggtcacatc cccattgacg ggccacgcca gatccgcgct tcgggttcct
     4021 gctcttcatg ccagcgccgg gcaagctcct gcgcctgacg ctcctgttca tcccttatct
     4081 gttgttcgtg ataaataacc gactcaagcg gtcgacttgt ccggctaata gctgcacctg
     4141 ctgactcaag ttcacgacac gctcgttcag tatcgcgttg ttctgttgcg taaccgcgtg
     4201 catcttctgc aattctgcga aggcgctctc ccactcgttc agccgccgca tatagtcctg
     4261 ttgcaaatgc tctaaggcgt tcagcaaatg cccttccagt tccgtcatac tcgtttactc
     4321 cctgaccagc ctcacggcgt tcttgtcgcc caccgtccag gtgttttccc ctttcacccc
     4381 gtccggcagc accagaaatt tcccgttctc gccattgacg aacgtcaccc cccaggtttt
     4441 tgcctcgagt ttcgccagcg tgttttcctg ctctctgatg gtcaagatat ttttcgcaat
     4501 cctgctttcc tgccactgaa tcagccccca gcaccccagg aaaatgccgc ccgtgacgct
     4561 gagcgcggtc agcgccggaa acagtacccg ccc
//
