LOCUS       NZ_CP065116             3171 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica strain C7 plasmid pC7-3k,
            complete sequence.
ACCESSION   NZ_CP065116
VERSION     NZ_CP065116.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16807070
            Assembly: GCF_031036455.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica
  ORGANISM  Salmonella enterica subsp. enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3171)
  AUTHORS   Huang,T.-W.
  TITLE     Whole-genome sequencing of ceftriaxone-resistant Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3171)
  AUTHORS   Huang,T.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-NOV-2020) Department of Microbiology and Immunology,
            School of Medicine, College of Medicine, Taipei Medical University,
            No. 250, Wuxin Street, Taipei 11031, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2019
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200x
            Sequencing Technology             :: Illumina, Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/01/2023 16:30:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,938
            CDSs (total)                      :: 4,816
            Genes (coding)                    :: 4,648
            CDSs (with protein)               :: 4,648
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 168
            CDSs (without protein)            :: 168
            Pseudo Genes (ambiguous residues) :: 0 of 168
            Pseudo Genes (frameshifted)       :: 66 of 168
            Pseudo Genes (incomplete)         :: 116 of 168
            Pseudo Genes (internal stop)      :: 30 of 168
            Pseudo Genes (multiple problems)  :: 42 of 168
            Pseudo Genes (short protein)      :: 1 of 168
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP065116.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3171
                     /organism="Salmonella enterica subsp. enterica"
                     /mol_type="genomic DNA"
                     /strain="C7"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:59201"
                     /plasmid="pC7-3k"
                     /geo_loc_name="Taiwan"
                     /collection_date="2000-05"
     gene            complement(353..547)
                     /locus_tag="I0P18_RS24670"
                     /old_locus_tag="I0P18_24445"
     CDS             complement(353..547)
                     /locus_tag="I0P18_RS24670"
                     /old_locus_tag="I0P18_24445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_095470085.1"
                     /translation="MNKQQQAVLNMAGFIKSQSLTLLEKLDALNADEQAAMCEKLHELA
                     EELQNSIQTRFEVENSTER"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            831..1154
                     /gene="mobA"
                     /locus_tag="I0P18_RS24675"
                     /old_locus_tag="I0P18_24450"
     CDS             831..1154
                     /gene="mobA"
                     /locus_tag="I0P18_RS24675"
                     /old_locus_tag="I0P18_24450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052604.1"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization protein MobA"
                     /protein_id="WP_001531325.1"
                     /translation="MTKRSGSNTRRRSISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
                     AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
                     MAD"
                     /name="mobA"
     gene            complement(1543..1971)
                     /locus_tag="I0P18_RS24680"
                     /old_locus_tag="I0P18_24455"
     CDS             complement(1543..1971)
                     /locus_tag="I0P18_RS24680"
                     /old_locus_tag="I0P18_24455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000222531.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_000222531.1"
                     /translation="MTYSVKNKWKAGGLSLGWTAVPTVLFFIQNEKKLTSVAFNTLLNL
                     IVHWWSLQEWPHPSMESLAIRMGVSVRTVQRAINDLEKANLLDKKPTSKSDRRYGGRNI
                     YDLTKLVDYLDTMGPSVAEQVKKPRHKKPVYTVRKTTA"
                     /name="helix-turn-helix domain-containing protein"
     gene            2129..2299
                     /locus_tag="I0P18_RS24685"
                     /old_locus_tag="I0P18_24460"
     CDS             2129..2299
                     /locus_tag="I0P18_RS24685"
                     /old_locus_tag="I0P18_24460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001531327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001531327.1"
                     /translation="MKTEQRHDLVKDIEVFGVSLSLLISRANEKSVTMPSGLSREQRRA
                     WAAEQARKIHN"
                     /name="hypothetical protein"
     gene            2263..2691
                     /locus_tag="I0P18_RS24690"
                     /old_locus_tag="I0P18_24465"
     CDS             2263..2691
                     /locus_tag="I0P18_RS24690"
                     /old_locus_tag="I0P18_24465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000534558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000534558.1"
                     /translation="MGSGAGAQNPQLNIVSFSETFNLYYTSRYSAKTLDKIDDFIEHFE
                     KYNLFGDPLKGYPAWTGKVSPSWKVPDHYENKEAIEKYARANKLWHAHLGDPVFKDTFH
                     GKYKVSDWVIHFQRLTPNHIKLLELGYHDPMKLPQNFE"
                     /name="hypothetical protein"
     Typing          583..822
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="99.585"
                     /coverage="100.0"
                     /evalue="3.54e-121"
     Typing          complement(2..165)
                     /name="rep_cluster_2370"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.611"
                     /coverage="100.0"
                     /evalue="2.4500000000000002e-65"
     Typing          complement(2967..3171)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.029"
                     /coverage="99.0"
                     /evalue="1.13e-99"
     Typing          832..1151
                     /name="MOBF"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.131"
                     /coverage="100.0"
                     /evalue="5.33e-62"
ORIGIN
        1 cgcacgaggg agcttccagg gggaaacgcc tggtatcttt atagtcctgt cgggtttcgc
       61 cacctctgac ttgagcgtcg atttttgtga tgctcgtcag gggggcggag cctatggaaa
      121 aacgccaacg gcgcagcctt ttccgggttc tcgttttttg ctcacatgtt tcttttggcg
      181 ttatcccctg attctgtgga taaccgcatc tccgcttttg agtgagccga caccgctcgc
      241 cgcagtcgaa cgaccgagcg tagcgagtca gtgagcgagg aagcggaaga gcgccttatg
      301 tgacattttc tccttacgct ctgttgtgcc gttcggcatc ctgtcctgag agttatctct
      361 ctgtgctatt ttctacttca aagcgtgtct ggatgctgtt ctggagttct tctgcgagtt
      421 cgtgcagttt ctcacacatg gcggcctgtt cgtcggcatt gagtgcgtcc agtttttcga
      481 gcagcgtcag gctctgactt tttatgaatc ccgccatgtt gagtacggct tgctgctgct
      541 tgttcatctt ttcgttttct ccgttctgtc tgtcatctgc gttgtgtgat tatatcgcgt
      601 accacttttc gactgtttta ccgccggtat tctgccgtct gacgctttga caggtatttc
      661 tgcctgacaa tactgtcact gccaaaaaac tgccgtgcct ttgtcggtaa ttcgaacttg
      721 ctgacaggac aggatgtgta attgttatac cgcgcataca tgcacgctat tacaattacc
      781 ctggtcaggg ctttgccccg acacccatgt cagatacgga gccatgtttt atgacaaaac
      841 gaagtggaag taatacgcgc aggcggtcta tcagtcgccc tgttcgtctg acggcagaag
      901 aagaccagga aatcagaaaa agggctgctg aatgcggcaa gaccgtttcc ggttttttac
      961 gggcggcagc tctcggtaag aaagttaact cactgactga tgatcgggta ctgaaagaag
     1021 ttatgagact gggggcgtta cagaaaaaac tctttatcga cggcaagcgt gtcggggaca
     1081 gggagtatgc ggaggtgctg atcgctatta cggagtatca ccgtgccctg ttatccagac
     1141 ttatggcaga ttagcttccc ggagagaaaa ctgtcgaaaa cagacggtat gaacaccgta
     1201 agctcccaaa gtgatcacca ttccctttca tgcatagcta tgcagcgagc tgaaaacgat
     1261 cctgacgcat ccttcctgtt ttcccggggt aaaacatctc tttttgcggt gtctgcgtca
     1321 gaatcgcgtt cagcgcgttt cagcggtgcg tacaattaag ggattatggt aaatatatga
     1381 gctatgcgat aactttaact gtgaagcgat gaacccatta caggcaaagc caattactcc
     1441 tgacagtggt ttagccagaa gcagggctac caagaccaat gcaataagta atatatcgtt
     1501 ttgctatcgt gcatcgctcg cgctcagttc cattgtgctt ttttaagctg tcgtttttct
     1561 tacggtatat accggttttt tatggcgtgg tttcttaact tgttcagcta ctgatggacc
     1621 cattgtatct aggtagtcaa ctagctttgt tagatcataa atattgcgac caccatatcg
     1681 gcgatcactc ttcgatgttg gtttcttgtc caagagatta gctttttcaa gatcattgat
     1741 agctctctga acagtccgta cagaaacccc catacgtatg gctagacttt ccattgacgg
     1801 atgcggccac tcttgcaaac tccaccagtg aacgatcagg ttaagtagtg tgttaaaggc
     1861 cactgaagtt agctttttct cgttttgtat aaaaaacaat acggtaggca ctgctgtcca
     1921 gccaagagac aaaccgccag ctttccattt attcttaacg gagtaagtca ttgattttcc
     1981 taagcccaaa aatatttaaa gtatatatta tatggtatat tcatatgaat agggtgacac
     2041 tggcgccatt attgtgcaac taaaaaagac tactctgaaa acgaggaaaa gattttttcc
     2101 tgcctgaatt agatacggag ttagcgatat gaaaaccgaa caacgtcatg atcttgttaa
     2161 agatattgag gtttttggcg tatccttgtc tctgttgatt tccagagcga atgagaagtc
     2221 tgttacaatg ccatctggtc taagtcggga gcagagaaga gcatgggcag cggagcaggc
     2281 gcgcaaaatc cacaattgaa tattgtctca ttctctgaga ccttcaacct ttattacaca
     2341 tccagatatt ctgcaaaaac actcgataaa atcgatgatt tcattgagca ttttgaaaaa
     2401 tacaatctct ttggcgatcc tttaaaagga tatccagctt ggactggcaa agtatcgcca
     2461 tcgtggaaag tgcctgatca ttacgaaaac aaagaagcta ttgagaagta tgctagagct
     2521 aacaaattat ggcatgctca tttaggcgat ccggttttta aagatacgtt tcatgggaaa
     2581 tacaaggttt ctgactgggt tattcatttc cagcggctga caccgaacca tataaagctt
     2641 ttagagcttg gataccatga cccaatgaag ctacctcaaa actttgaatg atcgagcggc
     2701 aggctaaatg aaatcttgag attcattcag tctcgtcgta atctcactat tgtaaaaacg
     2761 aaaaaaccac cctggcaggt ggtttttcga aggttagtta atcctggcag attctctaac
     2821 cgtggtaaca gtcttgtgcg agacatgtca ccaaatactg tcctttcagt gtagcctcag
     2881 ttaggccgcc acttcaagaa ctctcgttac atctctcgca catcctgctt accagtggcc
     2941 gttgccagtg gcgttaagtc gtgtcttacc gggttggact caagacgata gttaccggat
     3001 aaggcgcagc ggtcgggctg aacggggggt tcgtgcacac agcccagctt ggagcgaacg
     3061 acctacaccg aaccgagata ccaacagcgt gagctatgag aaagcgccac gcttcccgaa
     3121 gggagaaagg cggacaggta tccggtaagc ggcagggtcg gaacaggaga g
//
