LOCUS       NZ_CP065107             2442 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica strain SENT0058 plasmid pS58-2k,
            complete sequence.
ACCESSION   NZ_CP065107
VERSION     NZ_CP065107.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16807077
            Assembly: GCF_031039735.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica
  ORGANISM  Salmonella enterica subsp. enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2442)
  AUTHORS   Huang,T.-W.
  TITLE     Whole-genome sequencing of ceftriaxone-resistant Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2442)
  AUTHORS   Huang,T.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-NOV-2020) Department of Microbiology and Immunology,
            School of Medicine, College of Medicine, Taipei Medical University,
            No. 250, Wuxin Street, Taipei 11031, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 240x
            Sequencing Technology             :: Illumina, Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/01/2023 16:54:13
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,976
            CDSs (total)                      :: 4,863
            Genes (coding)                    :: 4,709
            CDSs (with protein)               :: 4,709
            Genes (RNA)                       :: 113
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 154
            CDSs (without protein)            :: 154
            Pseudo Genes (ambiguous residues) :: 0 of 154
            Pseudo Genes (frameshifted)       :: 70 of 154
            Pseudo Genes (incomplete)         :: 107 of 154
            Pseudo Genes (internal stop)      :: 26 of 154
            Pseudo Genes (multiple problems)  :: 41 of 154
            Pseudo Genes (short protein)      :: 1 of 154
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP065107.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2442
                     /organism="Salmonella enterica subsp. enterica"
                     /mol_type="genomic DNA"
                     /strain="SENT0058"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:59201"
                     /plasmid="pS58-2k"
                     /geo_loc_name="Taiwan"
                     /collection_date="2018-11"
     gene            296..1264
                     /gene="mobV"
                     /locus_tag="I0P33_RS24870"
                     /old_locus_tag="I0P33_24695"
     CDS             296..1264
                     /gene="mobV"
                     /locus_tag="I0P33_RS24870"
                     /old_locus_tag="I0P33_24695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000024818.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_000024818.1"
                     /translation="MANYAIMRCKKLTGMGSVASALQHCYRERETPNANAERTPENYCS
                     VSKSTDQAMGRVRELLPEKRRKDAVLAVEYVMTASPEWWKEATPRQQAEFFARSEQWLE
                     KKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLSAKEFIGGRSKMREDQSTYAESVK
                     KLGLERGIEGSRATHQTVQHYYESINRGTRSQVSISPEALEPRVLRKGIFTKDVEDQAA
                     IAKRLSHAVNDGFAGTIAMASQSAQNAKRARELQKTMDAQQKRLQSVTEPFKGLSREQM
                     TEILMMAQRFKQQNQEKEKQQRIEREKQRQTRSRGMGGMER"
                     /name="mobV"
     gene            complement(1334..1564)
                     /locus_tag="I0P33_RS24875"
                     /old_locus_tag="I0P33_24700"
     CDS             complement(1334..1564)
                     /locus_tag="I0P33_RS24875"
                     /old_locus_tag="I0P33_24700"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_124788667.1"
                     /translation="MMNAEDKLFKNVDRLMLHDSLKKNEVLTVWERTFLSSVYSIYRRT
                     SGNKYSTKGLSPKQKNAAFSILKKHNYHLND"
                     /name="hypothetical protein"
     gene            complement(1551..2033)
                     /locus_tag="I0P33_RS24880"
                     /old_locus_tag="I0P33_24705"
     CDS             complement(1551..2033)
                     /locus_tag="I0P33_RS24880"
                     /old_locus_tag="I0P33_24705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001565850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_223375251.1"
                     /translation="MNTKKISRLERHTYMDENGEVKQDSKIETFSIPAEPPYVKLYIAD
                     IAMIHGLSKSQNDVLLQLAMLIGWDGFVSVSKTRFEKTIQPRVHIEYQTFKNIIAALVD
                     KQIFFRAGRGELEANPFLFARGDWPSIYERRKKIELKISYDTNGRTVQTKVMDDEC"
                     /name="hypothetical protein"
     Typing          288..1261
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.077"
                     /coverage="96.0"
                     /evalue="0.0"
ORIGIN
        1 tgctctttca aagacgattt cattgcctga tttcgtcaag ggcgagcgta gcgagtgcca
       61 tttacccttg acgacactcc ggataaaaca ggcttggcag tggtgggggg tggcgcgaag
      121 cgacgccttc cacctgccag accgccgttg attttgacct tctggcagct tgctgcccga
      181 acgattttgc gtagcaaagt ctagtgagta cactatcatc ttgatagtgg cccgccggag
      241 gtatcgcaat gcgctccccc gcctggctga atgaatgccg gaatcagggg ggaacatggc
      301 gaactacgcg ataatgcgct gcaaaaagct gacgggaatg ggaagcgtgg ccagcgcgtt
      361 gcagcactgc taccgagagc gtgagacgcc gaacgctaac gctgaacgga caccagaaaa
      421 ctactgctct gtgtccaaat caacggatca ggcaatgggg cgtgtgcggg agctgctgcc
      481 ggaaaaacgc cgtaaagatg cggtactggc cgttgaatac gttatgacag caagccctga
      541 gtggtggaaa gaggccacac cacggcagca ggcggagttt ttcgcccgct ctgagcaatg
      601 gctggagaag aaatacggga aggatcgtgt tgtggcggcg gtggttcacc gggacgaggc
      661 caccccgcac ctgtctgcgt tcgtggtgcc attgacgcag gatggacggc tgtccgcgaa
      721 agagtttatt ggcgggcggt caaagatgcg tgaagatcag agcacctacg ctgaatcagt
      781 aaaaaaactg ggtcttgagc gcggcatcga gggaagccgc gccacgcatc agacagttca
      841 gcactactac gaatcgataa accgtggcac ccgtagccag gtatcgatct cgccggaggc
      901 gctggagccg cgtgtattgc ggaagggcat tttcaccaaa gacgtggaag atcaggcagc
      961 catagccaaa cgtctaagcc acgcagtgaa cgatggcttt gcaggaacca tcgctatggc
     1021 ctctcagagc gcccagaacg caaaaagagc gcgtgagcta cagaagacta tggatgcgca
     1081 gcagaaacgc ctacagagcg tcacagagcc ttttaagggg ctttccagag agcagatgac
     1141 cgaaatcctg atgatggctc agcggtttaa gcagcaaaac caggaaaagg aaaaacagca
     1201 gcgtattgaa cgtgaaaaac agcgacagac gcgatcgcgt ggcatgggtg gtatggagcg
     1261 ttagttttga tgcgatgcag gatagggcta acgccgcaaa gtgacgtcat ttgcggcatt
     1321 caccacgaaa aaattaatca ttcagatggt aattatgttt ttttaaaata gaaaaagctg
     1381 cgtttttctg ctttggtgac aaacccttag ttgagtattt attaccgcta gttctacgat
     1441 atatgctgta aacactgctt aaaaaagtac gctcccaaac agtcagaacc tcattctttt
     1501 ttagtgaatc atgcagcatt agcctgtcta catttttaaa aagtttatct tcagcattca
     1561 tcatccatta ccttcgtctg caccgttctt ccattggtgt cataactgat ctttaactca
     1621 attttctttc ttctttcgta aattgatggc cagtctcccc gtgcaaaaag aaaggggtta
     1681 gcttcaagtt ccccacgccc tgcccggaag aatatttgtt tatctacaag agccgcaatt
     1741 atgtttttaa aggtctgata ttcaatatga accctgggct gtatggtttt ttcaaatcta
     1801 gtttttgata cagacacaaa cccatcccat ccaatcagca ttgccaattg taaaagcaca
     1861 tcattttgag attttgataa accatgaatc atcgcaatgt ctgcaatgta tagcttgacg
     1921 tagggaggtt cggctgggat ggaaaaggtc tcgatcttag agtcttgttt tacctcaccg
     1981 ttttcatcca tgtatgtatg ccgttcaagc ctagaaatct ttttcgtatt cactccagcc
     2041 ccacgtttcg ccatgattta gtactcgcat ttaagtacta aagagacata cagtcaagtc
     2101 ctttgtatca agtacgatta gtacttgagg tgagtacgat tagtccttga ggtgagtacg
     2161 attagtactt gaggtgagta cgattagtac ttgaggtgag tacgattctt cgctctagcc
     2221 cttggtacaa gcgggttccc atatctatat ctatatatta agggggaaaa taagggctga
     2281 aaaacggcat ttttagacac tgaaaaactg ccttttttta gcaaggagtg tacgcatttc
     2341 tatgtacggg gagtggaaat tccgcttcct cgctttggct gttcgttcct cgtcgcgttg
     2401 ctcctgcggt acgcctcagc caaagctgcg gcgagcggtt cc
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