LOCUS       NZ_CP065099             3172 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica strain SENT0075 plasmid pS75-3k,
            complete sequence.
ACCESSION   NZ_CP065099
VERSION     NZ_CP065099.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16807078
            Assembly: GCF_031039535.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica
  ORGANISM  Salmonella enterica subsp. enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Huang,T.-W.
  TITLE     Whole-genome sequencing of ceftriaxone-resistant Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3172)
  AUTHORS   Huang,T.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-NOV-2020) Department of Microbiology and Immunology,
            School of Medicine, College of Medicine, Taipei Medical University,
            No. 250, Wuxin Street, Taipei 11031, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200x
            Sequencing Technology             :: Illumina, Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/01/2023 16:55:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,714
            CDSs (total)                      :: 4,604
            Genes (coding)                    :: 4,479
            CDSs (with protein)               :: 4,479
            Genes (RNA)                       :: 110
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 79
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 125
            CDSs (without protein)            :: 125
            Pseudo Genes (ambiguous residues) :: 0 of 125
            Pseudo Genes (frameshifted)       :: 46 of 125
            Pseudo Genes (incomplete)         :: 88 of 125
            Pseudo Genes (internal stop)      :: 31 of 125
            Pseudo Genes (multiple problems)  :: 36 of 125
            Pseudo Genes (short protein)      :: 1 of 125
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP065099.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Salmonella enterica subsp. enterica"
                     /mol_type="genomic DNA"
                     /strain="SENT0075"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:59201"
                     /plasmid="pS75-3k"
                     /geo_loc_name="Taiwan"
                     /collection_date="2019-01"
     gene            complement(join(3124..3172,1..347))
                     /locus_tag="I0P39_RS23560"
                     /old_locus_tag="I0P39_23415"
     CDS             complement(join(3124..3172,1..347))
                     /locus_tag="I0P39_RS23560"
                     /old_locus_tag="I0P39_23415"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001222910.1"
                     /translation="MRISNIDWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNELQAQENARKQANQKRMEGKTQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELRYPKDNILQKLKAIRLDLETSPDHH"
                     /name="hypothetical protein"
     gene            526..1479
                     /locus_tag="I0P39_RS23565"
                     /old_locus_tag="I0P39_23420"
     CDS             526..1479
                     /locus_tag="I0P39_RS23565"
                     /old_locus_tag="I0P39_23420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001360358.1"
                     /translation="MATYHLNVKFGGKGQAGNHADYIERKGEYEKRKDLEYSEHGNMPG
                     WARDNPSHFWQAADQFERANGSTYREIEIALPRELTPDQRIELVQDFVRQVAGERHAYS
                     FAIHNPKASIDGGEQPHAHIMMSQRINDGMERSPEQYFRRYNAKNPERGGAKKDSGNLT
                     PTQQKEQLRTLRASWSALQNEHLARHGHRVRVDHRSLEERGIKRTPERHFGFAASSRLD
                     HAQRREILQNRAQPLEHFLEKAHSVRHQFDAQVQQKELVKTLLQDVARERGHALTARIN
                     KTGEVEFERAPTRTRSNTRGHGMGIRDNSRGYDYER"
                     /name="MobA/MobL family protein"
     gene            1491..2021
                     /locus_tag="I0P39_RS23570"
                     /old_locus_tag="I0P39_23425"
     CDS             1491..2021
                     /locus_tag="I0P39_RS23570"
                     /old_locus_tag="I0P39_23425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_140018423.1"
                     /translation="MASTEEGLLTLLLSVEHLKNTAIEQQKAVADTLAVARETLRGYRD
                     ISDSVVKQVSDEVRKGVQKTDIAGLMGERMTQDFQRLEETVAKMRANAEALNKDIATIH
                     HNVVKEYNTLNKYSLKWFIGVTVSFLVMFSLLGWFTKTLIDRNYTATEVVYQKIVDIEK
                     KLDKPAIGKSRKN"
                     /name="hypothetical protein"
     Typing          527..1476
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.685"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttctgtaata tattgtcttt tgggtatctc agttcgcctg tttttgtgtc cactagtccg
       61 gcctcgatca gtaaccccgc cgcaagaaac aggcggtgat tgcgttcccg tcgttgtgtt
      121 ttcccctcca tccgtttttg gttggcctgt ttgcgtgcgt tctcctgtgc ctgtagctcg
      181 tttttttctg cggttgccag gacgtggagt agtttgcgct cctgttctgt tagtccggct
      241 tcgttatcga gcaggtcaat gatctgcctc tgtcgtgcgg tctgttctcc gagcttcctg
      301 ataaagccga ttcgtttctt caaccagtcg atgttgctga tgcgcatgtt tgggatgctc
      361 cctggtgttt tttgcggtgt gttggggttg tgcagtatat cgcttgcggt cggtgggtgc
      421 agggggtatc ttccgtgcta attcgtaaaa ttagaaggaa gcgcacttat atgtttcttc
      481 gccgttggct cagaaacatg tgcgctcctg cggagggcta acaccgtggc aacctatcac
      541 ctcaatgtaa aatttggcgg caagggacag gccggaaacc atgccgatta catcgaacgc
      601 aaaggcgagt acgagaaacg aaaagatctg gaatactcag agcacgggaa tatgccaggc
      661 tgggcgcgag ataatccctc ccatttctgg caagcggctg atcagtttga acgtgcgaat
      721 ggttcgactt atcgggagat cgaaatcgcc ttgccgcgtg aactgacacc ggatcagcgc
      781 attgaactgg tgcaggattt tgtgcgtcag gtagctggag aacggcacgc ctatagcttt
      841 gccattcaca atccaaaagc gagcattgac ggaggggaac agcctcatgc gcatatcatg
      901 atgagccagc gtattaacga tggtatggaa cgttcgccgg aacagtattt ccggcgttat
      961 aacgccaaga atcccgaacg gggaggcgca aaaaaagatt caggcaatct gacaccgact
     1021 cagcaaaaag agcaattgcg gacgttacgg gcgagctggt cagcgttaca gaacgagcat
     1081 ttagcgcgtc atggtcacag ggtgcgcgtt gaccatcgct cactggaaga acgcggaatt
     1141 aaacgcacac cagaacggca tttcggattt gccgcctcat cacggcttga tcatgcgcag
     1201 cgccgcgaaa tcctgcaaaa ccgagcgcag ccgctcgaac attttctaga gaaagcgcat
     1261 tcggttcgtc atcaatttga tgcacaagtt cagcaaaaag agttagttaa aacgctttta
     1321 caggacgtcg cacgggagcg agggcacgcg cttacggcaa gaataaataa aacaggtgaa
     1381 gttgaatttg aacgtgcgcc aacgcggacg cggagtaaca cgcgagggca cggcatgggc
     1441 attcgtgaca actcacgcgg gtacgactac gaacgttaaa aggggactgt atggcgagta
     1501 cagaagaggg gttgctcacg ctcttgttgt ccgttgagca tttgaaaaac actgcgatag
     1561 aacaacagaa agcggttgca gacacgctgg cggtcgcaag ggaaacactg cgggggtatc
     1621 gggatatttc tgacagtgtt gtaaaacagg ttagcgatga agtcagaaaa ggggtacaga
     1681 aaacggacat tgcggggctg atgggtgagc gcatgaccca ggattttcag cgtcttgaag
     1741 agactgtggc aaagatgaga gccaacgcgg aggcgcttaa caaggacatt gcgacaattc
     1801 atcacaatgt tgttaaagaa tacaacacgc tcaataaata cagtctgaaa tggtttatcg
     1861 gtgttacggt cagttttctg gtcatgttct cgttgcttgg ctggtttacc aaaacgttga
     1921 tcgacaggaa ctacaccgcg acggaggtcg tgtatcagaa aattgttgat attgaaaaga
     1981 aactggacaa accagcaata gggaagagcc ggaaaaactg acgcgcttcg cttgtccaac
     2041 gcctcacggg acgcgaaaaa attccgcgtc ccgttcaccg ttttctgatg agaaagtttg
     2101 ctgttttgac ccgttcgccc ttctgaacgc tcgaaacaga tcgcgcattg ctttcgtgaa
     2161 tagttatgca ggctcatgaa aacgattctg acgcgttttt tgaggtaggg gtgggggaaa
     2221 gcatggtttt ttgatgtttt gagcgtaaaa gcgtgaaaaa tcgcgttatt gtgcttgcga
     2281 tctttcgtca gggagcgtag aacgaaaaaa gcccgccgtt aggcgagctt cttcgggttc
     2341 attgaggttt tcgacctcct caatgttcct gtggagtctg ttgcggcgac aacggaaacc
     2401 agttcattca gtttgcatga accttctgta ttcttcaagc attaccgacc gcacagcctc
     2461 cccagaatcc cgaaaaaatc ctgtttttgc agatgattgc gtgtttgcaa agaccgtttg
     2521 cggttggggg agctgtgacg acggcaaccg cacgcgtgag agttccgcta ccggcgcaga
     2581 gagtttcatc gacagcggac acctgatgag ttgccacaaa aaccgtatgt agcgcggcta
     2641 gattggttga gttagacctt ggcggcagtt cccggtatgt ggtggcgtga cgggtgagat
     2701 ggtgcggcga agacgcatac gtcacgcagg cgcgggttct tccaccgacg cgccccgtga
     2761 tcgatggcct tggctccgtc cggcatatcg agagcggcaa actacccgtc ccttcactgg
     2821 gaggggtgag ttgttgccgt tccctccgac cttccaccat ccagcatatc gcacgatccc
     2881 atgagcaccg caacaactga taactccaga gcaaaaaaaa aaaaggatct gcatcatgtg
     2941 agagtgatcc caccgctcgc cgcagcccca gcgaccgaac gtagtgagcg agtgggcgag
     3001 gaagcggaag tgaaccggaa accacattga gcacgtacgc acctatgcca gatccgcgcg
     3061 tagcgcgtcg cgaaatcgaa aacattgaac accggcaggc aaacgcacca ccacgcagcg
     3121 gaattaatga tgatctgggc ttgtttcaag atcgagcctg attgccttaa gt
//
