LOCUS       NZ_CP065096             3172 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica strain SENT0077 plasmid pS77-3k,
            complete sequence.
ACCESSION   NZ_CP065096
VERSION     NZ_CP065096.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16807079
            Assembly: GCF_031039375.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica
  ORGANISM  Salmonella enterica subsp. enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Huang,T.-W.
  TITLE     Whole-genome sequencing of ceftriaxone-resistant Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3172)
  AUTHORS   Huang,T.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-NOV-2020) Department of Microbiology and Immunology,
            School of Medicine, College of Medicine, Taipei Medical University,
            No. 250, Wuxin Street, Taipei 11031, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2019
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 250x
            Sequencing Technology             :: Illumina, Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/01/2023 17:08:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,747
            CDSs (total)                      :: 4,634
            Genes (coding)                    :: 4,503
            CDSs (with protein)               :: 4,503
            Genes (RNA)                       :: 113
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 45 of 131
            Pseudo Genes (incomplete)         :: 95 of 131
            Pseudo Genes (internal stop)      :: 31 of 131
            Pseudo Genes (multiple problems)  :: 36 of 131
            Pseudo Genes (short protein)      :: 1 of 131
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP065096.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Salmonella enterica subsp. enterica"
                     /mol_type="genomic DNA"
                     /strain="SENT0077"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:59201"
                     /plasmid="pS77-3k"
                     /geo_loc_name="Taiwan"
                     /collection_date="2019-01"
     gene            complement(518..1048)
                     /locus_tag="I0P28_RS23725"
                     /old_locus_tag="I0P28_23585"
     CDS             complement(518..1048)
                     /locus_tag="I0P28_RS23725"
                     /old_locus_tag="I0P28_23585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_140018423.1"
                     /translation="MASTEEGLLTLLLSVEHLKNTAIEQQKAVADTLAVARETLRGYRD
                     ISDSVVKQVSDEVRKGVQKTDIAGLMGERMTQDFQRLEETVAKMRANAEALNKDIATIH
                     HNVVKEYNTLNKYSLKWFIGVTVSFLVMFSLLGWFTKTLIDRNYTATEVVYQKIVDIEK
                     KLDKPAIGKSRKN"
                     /name="hypothetical protein"
     gene            complement(1060..2013)
                     /locus_tag="I0P28_RS23730"
                     /old_locus_tag="I0P28_23590"
     CDS             complement(1060..2013)
                     /locus_tag="I0P28_RS23730"
                     /old_locus_tag="I0P28_23590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001360358.1"
                     /translation="MATYHLNVKFGGKGQAGNHADYIERKGEYEKRKDLEYSEHGNMPG
                     WARDNPSHFWQAADQFERANGSTYREIEIALPRELTPDQRIELVQDFVRQVAGERHAYS
                     FAIHNPKASIDGGEQPHAHIMMSQRINDGMERSPEQYFRRYNAKNPERGGAKKDSGNLT
                     PTQQKEQLRTLRASWSALQNEHLARHGHRVRVDHRSLEERGIKRTPERHFGFAASSRLD
                     HAQRREILQNRAQPLEHFLEKAHSVRHQFDAQVQQKELVKTLLQDVARERGHALTARIN
                     KTGEVEFERAPTRTRSNTRGHGMGIRDNSRGYDYER"
                     /name="MobA/MobL family protein"
     gene            2192..2587
                     /locus_tag="I0P28_RS23735"
                     /old_locus_tag="I0P28_23595"
     CDS             2192..2587
                     /locus_tag="I0P28_RS23735"
                     /old_locus_tag="I0P28_23595"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001222910.1"
                     /translation="MRISNIDWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNELQAQENARKQANQKRMEGKTQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELRYPKDNILQKLKAIRLDLETSPDHH"
                     /name="hypothetical protein"
     Typing          complement(1064..2013)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.685"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tcacagctcc cccaaccgca aacggtcttt gcaaacacgc aatcatctgc aaaaacagga
       61 ttttttcggg attctgggga ggctgtgcgg tcggtaatgc ttgaagaata cagaaggttc
      121 atgcaaactg aatgaactgg tttccgttgt cgccgcaaca gactccacag gaacattgag
      181 gaggtcgaaa acctcaatga acccgaagaa gctcgcctaa cggcgggctt ttttcgttct
      241 acgctccctg acgaaagatc gcaagcacaa taacgcgatt tttcacgctt ttacgctcaa
      301 aacatcaaaa aaccatgctt tcccccaccc ctacctcaaa aaacgcgtca gaatcgtttt
      361 catgagcctg cataactatt cacgaaagca atgcgcgatc tgtttcgagc gttcagaagg
      421 gcgaacgggt caaaacagca aactttctca tcagaaaacg gtgaacggga cgcggaattt
      481 tttcgcgtcc cgtgaggcgt tggacaagcg aagcgcgtca gtttttccgg ctcttcccta
      541 ttgctggttt gtccagtttc ttttcaatat caacaatttt ctgatacacg acctccgtcg
      601 cggtgtagtt cctgtcgatc aacgttttgg taaaccagcc aagcaacgag aacatgacca
      661 gaaaactgac cgtaacaccg ataaaccatt tcagactgta tttattgagc gtgttgtatt
      721 ctttaacaac attgtgatga attgtcgcaa tgtccttgtt aagcgcctcc gcgttggctc
      781 tcatctttgc cacagtctct tcaagacgct gaaaatcctg ggtcatgcgc tcacccatca
      841 gccccgcaat gtccgttttc tgtacccctt ttctgacttc atcgctaacc tgttttacaa
      901 cactgtcaga aatatcccga tacccccgca gtgtttccct tgcgaccgcc agcgtgtctg
      961 caaccgcttt ctgttgttct atcgcagtgt ttttcaaatg ctcaacggac aacaagagcg
     1021 tgagcaaccc ctcttctgta ctcgccatac agtccccttt taacgttcgt agtcgtaccc
     1081 gcgtgagttg tcacgaatgc ccatgccgtg ccctcgcgtg ttactccgcg tccgcgttgg
     1141 cgcacgttca aattcaactt cacctgtttt atttattctt gccgtaagcg cgtgccctcg
     1201 ctcccgtgcg acgtcctgta aaagcgtttt aactaactct ttttgctgaa cttgtgcatc
     1261 aaattgatga cgaaccgaat gcgctttctc tagaaaatgt tcgagcggct gcgctcggtt
     1321 ttgcaggatt tcgcggcgct gcgcatgatc aagccgtgat gaggcggcaa atccgaaatg
     1381 ccgttctggt gtgcgtttaa ttccgcgttc ttccagtgag cgatggtcaa cgcgcaccct
     1441 gtgaccatga cgcgctaaat gctcgttctg taacgctgac cagctcgccc gtaacgtccg
     1501 caattgctct ttttgctgag tcggtgtcag attgcctgaa tctttttttg cgcctccccg
     1561 ttcgggattc ttggcgttat aacgccggaa atactgttcc ggcgaacgtt ccataccatc
     1621 gttaatacgc tggctcatca tgatatgcgc atgaggctgt tcccctccgt caatgctcgc
     1681 ttttggattg tgaatggcaa agctataggc gtgccgttct ccagctacct gacgcacaaa
     1741 atcctgcacc agttcaatgc gctgatccgg tgtcagttca cgcggcaagg cgatttcgat
     1801 ctcccgataa gtcgaaccat tcgcacgttc aaactgatca gccgcttgcc agaaatggga
     1861 gggattatct cgcgcccagc ctggcatatt cccgtgctct gagtattcca gatcttttcg
     1921 tttctcgtac tcgcctttgc gttcgatgta atcggcatgg tttccggcct gtcccttgcc
     1981 gccaaatttt acattgaggt gataggttgc cacggtgtta gccctccgca ggagcgcaca
     2041 tgtttctgag ccaacggcga agaaacatat aagtgcgctt ccttctaatt ttacgaatta
     2101 gcacggaaga taccccctgc acccaccgac cgcaagcgat atactgcaca accccaacac
     2161 accgcaaaaa acaccaggga gcatcccaaa catgcgcatc agcaacatcg actggttgaa
     2221 gaaacgaatc ggctttatca ggaagctcgg agaacagacc gcacgacaga ggcagatcat
     2281 tgacctgctc gataacgaag ccggactaac agaacaggag cgcaaactac tccacgtcct
     2341 ggcaaccgca gaaaaaaacg agctacaggc acaggagaac gcacgcaaac aggccaacca
     2401 aaaacggatg gaggggaaaa cacaacgacg ggaacgcaat caccgcctgt ttcttgcggc
     2461 ggggttactg atcgaggccg gactagtgga cacaaaaaca ggcgaactga gatacccaaa
     2521 agacaatata ttacagaaac ttaaggcaat caggctcgat cttgaaacaa gcccagatca
     2581 tcattaattc cgctgcgtgg tggtgcgttt gcctgccggt gttcaatgtt ttcgatttcg
     2641 cgacgcgcta cgcgcggatc tggcataggt gcgtacgtgc tcaatgtggt ttccggttca
     2701 cttccgcttc ctcgcccact cgctcactac gttcggtcgc tggggctgcg gcgagcggtg
     2761 ggatcactct cacatgatgc agatcctttt ttttttttgc tctggagtta tcagttgttg
     2821 cggtgctcat gggatcgtgc gatatgctgg atggtggaag gtcggaggga acggcaacaa
     2881 ctcacccctc ccagtgaagg gacgggtagt ttgccgctct cgatatgccg gacggagcca
     2941 aggccatcga tcacggggcg cgtcggtgga agaacccgcg cctgcgtgac gtatgcgtct
     3001 tcgccgcacc atctcacccg tcacgccacc acataccggg aactgccgcc aaggtctaac
     3061 tcaaccaatc tagccgcgct acatacggtt tttgtggcaa ctcatcaggt gtccgctgtc
     3121 gatgaaactc tctgcgccgg tagcggaact ctcacgcgtg cggttgccgt cg
//
