LOCUS       NZ_CP065093             3172 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica strain SENT0080 plasmid pS80-3k,
            complete sequence.
ACCESSION   NZ_CP065093
VERSION     NZ_CP065093.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16807080
            Assembly: GCF_031039175.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica
  ORGANISM  Salmonella enterica subsp. enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Huang,T.-W.
  TITLE     Whole-genome sequencing of ceftriaxone-resistant Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3172)
  AUTHORS   Huang,T.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-NOV-2020) Department of Microbiology and Immunology,
            School of Medicine, College of Medicine, Taipei Medical University,
            No. 250, Wuxin Street, Taipei 11031, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2019
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 320x
            Sequencing Technology             :: Illumina, Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/01/2023 16:20:36
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,640
            CDSs (total)                      :: 4,525
            Genes (coding)                    :: 4,393
            CDSs (with protein)               :: 4,393
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 45 of 132
            Pseudo Genes (incomplete)         :: 97 of 132
            Pseudo Genes (internal stop)      :: 30 of 132
            Pseudo Genes (multiple problems)  :: 36 of 132
            Pseudo Genes (short protein)      :: 1 of 132
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP065093.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Salmonella enterica subsp. enterica"
                     /mol_type="genomic DNA"
                     /strain="SENT0080"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:59201"
                     /plasmid="pS80-3k"
                     /geo_loc_name="Taiwan"
                     /collection_date="2019-02"
     gene            complement(77..607)
                     /locus_tag="I0P20_RS23190"
                     /old_locus_tag="I0P20_23035"
     CDS             complement(77..607)
                     /locus_tag="I0P20_RS23190"
                     /old_locus_tag="I0P20_23035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_140018423.1"
                     /translation="MASTEEGLLTLLLSVEHLKNTAIEQQKAVADTLAVARETLRGYRD
                     ISDSVVKQVSDEVRKGVQKTDIAGLMGERMTQDFQRLEETVAKMRANAEALNKDIATIH
                     HNVVKEYNTLNKYSLKWFIGVTVSFLVMFSLLGWFTKTLIDRNYTATEVVYQKIVDIEK
                     KLDKPAIGKSRKN"
                     /name="hypothetical protein"
     gene            complement(619..1572)
                     /locus_tag="I0P20_RS23195"
                     /old_locus_tag="I0P20_23040"
     CDS             complement(619..1572)
                     /locus_tag="I0P20_RS23195"
                     /old_locus_tag="I0P20_23040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001360358.1"
                     /translation="MATYHLNVKFGGKGQAGNHADYIERKGEYEKRKDLEYSEHGNMPG
                     WARDNPSHFWQAADQFERANGSTYREIEIALPRELTPDQRIELVQDFVRQVAGERHAYS
                     FAIHNPKASIDGGEQPHAHIMMSQRINDGMERSPEQYFRRYNAKNPERGGAKKDSGNLT
                     PTQQKEQLRTLRASWSALQNEHLARHGHRVRVDHRSLEERGIKRTPERHFGFAASSRLD
                     HAQRREILQNRAQPLEHFLEKAHSVRHQFDAQVQQKELVKTLLQDVARERGHALTARIN
                     KTGEVEFERAPTRTRSNTRGHGMGIRDNSRGYDYER"
                     /name="MobA/MobL family protein"
     gene            1751..2146
                     /locus_tag="I0P20_RS23200"
                     /old_locus_tag="I0P20_23045"
     CDS             1751..2146
                     /locus_tag="I0P20_RS23200"
                     /old_locus_tag="I0P20_23045"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001222910.1"
                     /translation="MRISNIDWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNELQAQENARKQANQKRMEGKTQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELRYPKDNILQKLKAIRLDLETSPDHH"
                     /name="hypothetical protein"
     Typing          complement(623..1572)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.685"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 actttctcat cagaaaacgg tgaacgggac gcggaatttt ttcgcgtccc gtgaggcgtt
       61 ggacaagcga agcgcgtcag tttttccggc tcttccctat tgctggtttg tccagtttct
      121 tttcaatatc aacaattttc tgatacacga cctccgtcgc ggtgtagttc ctgtcgatca
      181 acgttttggt aaaccagcca agcaacgaga acatgaccag aaaactgacc gtaacaccga
      241 taaaccattt cagactgtat ttattgagcg tgttgtattc tttaacaaca ttgtgatgaa
      301 ttgtcgcaat gtccttgtta agcgcctccg cgttggctct catctttgcc acagtctctt
      361 caagacgctg aaaatcctgg gtcatgcgct cacccatcag ccccgcaatg tccgttttct
      421 gtaccccttt tctgacttca tcgctaacct gttttacaac actgtcagaa atatcccgat
      481 acccccgcag tgtttccctt gcgaccgcca gcgtgtctgc aaccgctttc tgttgttcta
      541 tcgcagtgtt tttcaaatgc tcaacggaca acaagagcgt gagcaacccc tcttctgtac
      601 tcgccataca gtcccctttt aacgttcgta gtcgtacccg cgtgagttgt cacgaatgcc
      661 catgccgtgc cctcgcgtgt tactccgcgt ccgcgttggc gcacgttcaa attcaacttc
      721 acctgtttta tttattcttg ccgtaagcgc gtgccctcgc tcccgtgcga cgtcctgtaa
      781 aagcgtttta actaactctt tttgctgaac ttgtgcatca aattgatgac gaaccgaatg
      841 cgctttctct agaaaatgtt cgagcggctg cgctcggttt tgcaggattt cgcggcgctg
      901 cgcatgatca agccgtgatg aggcggcaaa tccgaaatgc cgttctggtg tgcgtttaat
      961 tccgcgttct tccagtgagc gatggtcaac gcgcaccctg tgaccatgac gcgctaaatg
     1021 ctcgttctgt aacgctgacc agctcgcccg taacgtccgc aattgctctt tttgctgagt
     1081 cggtgtcaga ttgcctgaat ctttttttgc gcctccccgt tcgggattct tggcgttata
     1141 acgccggaaa tactgttccg gcgaacgttc cataccatcg ttaatacgct ggctcatcat
     1201 gatatgcgca tgaggctgtt cccctccgtc aatgctcgct tttggattgt gaatggcaaa
     1261 gctataggcg tgccgttctc cagctacctg acgcacaaaa tcctgcacca gttcaatgcg
     1321 ctgatccggt gtcagttcac gcggcaaggc gatttcgatc tcccgataag tcgaaccatt
     1381 cgcacgttca aactgatcag ccgcttgcca gaaatgggag ggattatctc gcgcccagcc
     1441 tggcatattc ccgtgctctg agtattccag atcttttcgt ttctcgtact cgcctttgcg
     1501 ttcgatgtaa tcggcatggt ttccggcctg tcccttgccg ccaaatttta cattgaggtg
     1561 ataggttgcc acggtgttag ccctccgcag gagcgcacat gtttctgagc caacggcgaa
     1621 gaaacatata agtgcgcttc cttctaattt tacgaattag cacggaagat accccctgca
     1681 cccaccgacc gcaagcgata tactgcacaa ccccaacaca ccgcaaaaaa caccagggag
     1741 catcccaaac atgcgcatca gcaacatcga ctggttgaag aaacgaatcg gctttatcag
     1801 gaagctcgga gaacagaccg cacgacagag gcagatcatt gacctgctcg ataacgaagc
     1861 cggactaaca gaacaggagc gcaaactact ccacgtcctg gcaaccgcag aaaaaaacga
     1921 gctacaggca caggagaacg cacgcaaaca ggccaaccaa aaacggatgg aggggaaaac
     1981 acaacgacgg gaacgcaatc accgcctgtt tcttgcggcg gggttactga tcgaggccgg
     2041 actagtggac acaaaaacag gcgaactgag atacccaaaa gacaatatat tacagaaact
     2101 taaggcaatc aggctcgatc ttgaaacaag cccagatcat cattaattcc gctgcgtggt
     2161 ggtgcgtttg cctgccggtg ttcaatgttt tcgatttcgc gacgcgctac gcgcggatct
     2221 ggcataggtg cgtacgtgct caatgtggtt tccggttcac ttccgcttcc tcgcccactc
     2281 gctcactacg ttcggtcgct ggggctgcgg cgagcggtgg gatcactctc acatgatgca
     2341 gatccttttt tttttttgct ctggagttat cagttgttgc ggtgctcatg ggatcgtgcg
     2401 atatgctgga tggtggaagg tcggagggaa cggcaacaac tcacccctcc cagtgaaggg
     2461 acgggtagtt tgccgctctc gatatgccgg acggagccaa ggccatcgat cacggggcgc
     2521 gtcggtggaa gaacccgcgc ctgcgtgacg tatgcgtctt cgccgcacca tctcacccgt
     2581 cacgccacca cataccggga actgccgcca aggtctaact caaccaatct agccgcgcta
     2641 catacggttt ttgtggcaac tcatcaggtg tccgctgtcg atgaaactct ctgcgccggt
     2701 agcggaactc tcacgcgtgc ggttgccgtc gtcacagctc ccccaaccgc aaacggtctt
     2761 tgcaaacacg caatcatctg caaaaacagg attttttcgg gattctgggg aggctgtgcg
     2821 gtcggtaatg cttgaagaat acagaaggtt catgcaaact gaatgaactg gtttccgttg
     2881 tcgccgcaac agactccaca ggaacattga ggaggtcgaa aacctcaatg aacccgaaga
     2941 agctcgccta acggcgggct tttttcgttc tacgctccct gacgaaagat cgcaagcaca
     3001 ataacgcgat ttttcacgct tttacgctca aaacatcaaa aaaccatgct ttcccccacc
     3061 cctacctcaa aaaacgcgtc agaatcgttt tcatgagcct gcataactat tcacgaaagc
     3121 aatgcgcgat ctgtttcgag cgttcagaag ggcgaacggg tcaaaacagc aa
//
