LOCUS       NZ_CP065091             3172 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica strain SENT0083 plasmid pS83-3k,
            complete sequence.
ACCESSION   NZ_CP065091
VERSION     NZ_CP065091.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16807081
            Assembly: GCF_031039055.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica
  ORGANISM  Salmonella enterica subsp. enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Huang,T.-W.
  TITLE     Whole-genome sequencing of ceftriaxone-resistant Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3172)
  AUTHORS   Huang,T.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-NOV-2020) Department of Microbiology and Immunology,
            School of Medicine, College of Medicine, Taipei Medical University,
            No. 250, Wuxin Street, Taipei 11031, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2019
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 320x
            Sequencing Technology             :: Illumina, Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/01/2023 16:25:25
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,752
            CDSs (total)                      :: 4,637
            Genes (coding)                    :: 4,506
            CDSs (with protein)               :: 4,506
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 45 of 131
            Pseudo Genes (incomplete)         :: 95 of 131
            Pseudo Genes (internal stop)      :: 31 of 131
            Pseudo Genes (multiple problems)  :: 36 of 131
            Pseudo Genes (short protein)      :: 1 of 131
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP065091.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Salmonella enterica subsp. enterica"
                     /mol_type="genomic DNA"
                     /strain="SENT0083"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:59201"
                     /plasmid="pS83-3k"
                     /geo_loc_name="Taiwan"
                     /collection_date="2019-02"
     gene            complement(583..978)
                     /locus_tag="I0P24_RS23750"
                     /old_locus_tag="I0P24_23600"
     CDS             complement(583..978)
                     /locus_tag="I0P24_RS23750"
                     /old_locus_tag="I0P24_23600"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001222910.1"
                     /translation="MRISNIDWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNELQAQENARKQANQKRMEGKTQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELRYPKDNILQKLKAIRLDLETSPDHH"
                     /name="hypothetical protein"
     gene            1157..2110
                     /locus_tag="I0P24_RS23755"
                     /old_locus_tag="I0P24_23605"
     CDS             1157..2110
                     /locus_tag="I0P24_RS23755"
                     /old_locus_tag="I0P24_23605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001360358.1"
                     /translation="MATYHLNVKFGGKGQAGNHADYIERKGEYEKRKDLEYSEHGNMPG
                     WARDNPSHFWQAADQFERANGSTYREIEIALPRELTPDQRIELVQDFVRQVAGERHAYS
                     FAIHNPKASIDGGEQPHAHIMMSQRINDGMERSPEQYFRRYNAKNPERGGAKKDSGNLT
                     PTQQKEQLRTLRASWSALQNEHLARHGHRVRVDHRSLEERGIKRTPERHFGFAASSRLD
                     HAQRREILQNRAQPLEHFLEKAHSVRHQFDAQVQQKELVKTLLQDVARERGHALTARIN
                     KTGEVEFERAPTRTRSNTRGHGMGIRDNSRGYDYER"
                     /name="MobA/MobL family protein"
     gene            2122..2652
                     /locus_tag="I0P24_RS23760"
                     /old_locus_tag="I0P24_23610"
     CDS             2122..2652
                     /locus_tag="I0P24_RS23760"
                     /old_locus_tag="I0P24_23610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_140018423.1"
                     /translation="MASTEEGLLTLLLSVEHLKNTAIEQQKAVADTLAVARETLRGYRD
                     ISDSVVKQVSDEVRKGVQKTDIAGLMGERMTQDFQRLEETVAKMRANAEALNKDIATIH
                     HNVVKEYNTLNKYSLKWFIGVTVSFLVMFSLLGWFTKTLIDRNYTATEVVYQKIVDIEK
                     KLDKPAIGKSRKN"
                     /name="hypothetical protein"
     Typing          1158..2107
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.685"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cggcaaccgc acgcgtgaga gttccgctac cggcgcagag agtttcatcg acagcggaca
       61 cctgatgagt tgccacaaaa accgtatgta gcgcggctag attggttgag ttagaccttg
      121 gcggcagttc ccggtatgtg gtggcgtgac gggtgagatg gtgcggcgaa gacgcatacg
      181 tcacgcaggc gcgggttctt ccaccgacgc gccccgtgat cgatggcctt ggctccgtcc
      241 ggcatatcga gagcggcaaa ctacccgtcc cttcactggg aggggtgagt tgttgccgtt
      301 ccctccgacc ttccaccatc cagcatatcg cacgatccca tgagcaccgc aacaactgat
      361 aactccagag caaaaaaaaa aaaggatctg catcatgtga gagtgatccc accgctcgcc
      421 gcagccccag cgaccgaacg tagtgagcga gtgggcgagg aagcggaagt gaaccggaaa
      481 ccacattgag cacgtacgca cctatgccag atccgcgcgt agcgcgtcgc gaaatcgaaa
      541 acattgaaca ccggcaggca aacgcaccac cacgcagcgg aattaatgat gatctgggct
      601 tgtttcaaga tcgagcctga ttgccttaag tttctgtaat atattgtctt ttgggtatct
      661 cagttcgcct gtttttgtgt ccactagtcc ggcctcgatc agtaaccccg ccgcaagaaa
      721 caggcggtga ttgcgttccc gtcgttgtgt tttcccctcc atccgttttt ggttggcctg
      781 tttgcgtgcg ttctcctgtg cctgtagctc gtttttttct gcggttgcca ggacgtggag
      841 tagtttgcgc tcctgttctg ttagtccggc ttcgttatcg agcaggtcaa tgatctgcct
      901 ctgtcgtgcg gtctgttctc cgagcttcct gataaagccg attcgtttct tcaaccagtc
      961 gatgttgctg atgcgcatgt ttgggatgct ccctggtgtt ttttgcggtg tgttggggtt
     1021 gtgcagtata tcgcttgcgg tcggtgggtg cagggggtat cttccgtgct aattcgtaaa
     1081 attagaagga agcgcactta tatgtttctt cgccgttggc tcagaaacat gtgcgctcct
     1141 gcggagggct aacaccgtgg caacctatca cctcaatgta aaatttggcg gcaagggaca
     1201 ggccggaaac catgccgatt acatcgaacg caaaggcgag tacgagaaac gaaaagatct
     1261 ggaatactca gagcacggga atatgccagg ctgggcgcga gataatccct cccatttctg
     1321 gcaagcggct gatcagtttg aacgtgcgaa tggttcgact tatcgggaga tcgaaatcgc
     1381 cttgccgcgt gaactgacac cggatcagcg cattgaactg gtgcaggatt ttgtgcgtca
     1441 ggtagctgga gaacggcacg cctatagctt tgccattcac aatccaaaag cgagcattga
     1501 cggaggggaa cagcctcatg cgcatatcat gatgagccag cgtattaacg atggtatgga
     1561 acgttcgccg gaacagtatt tccggcgtta taacgccaag aatcccgaac ggggaggcgc
     1621 aaaaaaagat tcaggcaatc tgacaccgac tcagcaaaaa gagcaattgc ggacgttacg
     1681 ggcgagctgg tcagcgttac agaacgagca tttagcgcgt catggtcaca gggtgcgcgt
     1741 tgaccatcgc tcactggaag aacgcggaat taaacgcaca ccagaacggc atttcggatt
     1801 tgccgcctca tcacggcttg atcatgcgca gcgccgcgaa atcctgcaaa accgagcgca
     1861 gccgctcgaa cattttctag agaaagcgca ttcggttcgt catcaatttg atgcacaagt
     1921 tcagcaaaaa gagttagtta aaacgctttt acaggacgtc gcacgggagc gagggcacgc
     1981 gcttacggca agaataaata aaacaggtga agttgaattt gaacgtgcgc caacgcggac
     2041 gcggagtaac acgcgagggc acggcatggg cattcgtgac aactcacgcg ggtacgacta
     2101 cgaacgttaa aaggggactg tatggcgagt acagaagagg ggttgctcac gctcttgttg
     2161 tccgttgagc atttgaaaaa cactgcgata gaacaacaga aagcggttgc agacacgctg
     2221 gcggtcgcaa gggaaacact gcgggggtat cgggatattt ctgacagtgt tgtaaaacag
     2281 gttagcgatg aagtcagaaa aggggtacag aaaacggaca ttgcggggct gatgggtgag
     2341 cgcatgaccc aggattttca gcgtcttgaa gagactgtgg caaagatgag agccaacgcg
     2401 gaggcgctta acaaggacat tgcgacaatt catcacaatg ttgttaaaga atacaacacg
     2461 ctcaataaat acagtctgaa atggtttatc ggtgttacgg tcagttttct ggtcatgttc
     2521 tcgttgcttg gctggtttac caaaacgttg atcgacagga actacaccgc gacggaggtc
     2581 gtgtatcaga aaattgttga tattgaaaag aaactggaca aaccagcaat agggaagagc
     2641 cggaaaaact gacgcgcttc gcttgtccaa cgcctcacgg gacgcgaaaa aattccgcgt
     2701 cccgttcacc gttttctgat gagaaagttt gctgttttga cccgttcgcc cttctgaacg
     2761 ctcgaaacag atcgcgcatt gctttcgtga atagttatgc aggctcatga aaacgattct
     2821 gacgcgtttt ttgaggtagg ggtgggggaa agcatggttt tttgatgttt tgagcgtaaa
     2881 agcgtgaaaa atcgcgttat tgtgcttgcg atctttcgtc agggagcgta gaacgaaaaa
     2941 agcccgccgt taggcgagct tcttcgggtt cattgaggtt ttcgacctcc tcaatgttcc
     3001 tgtggagtct gttgcggcga caacggaaac cagttcattc agtttgcatg aaccttctgt
     3061 attcttcaag cattaccgac cgcacagcct ccccagaatc ccgaaaaaat cctgtttttg
     3121 cagatgattg cgtgtttgca aagaccgttt gcggttgggg gagctgtgac ga
//
