LOCUS       NZ_CP065086             3373 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica strain SENT0144 plasmid
            pS144-3k, complete sequence.
ACCESSION   NZ_CP065086
VERSION     NZ_CP065086.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16807083
            Assembly: GCF_031039015.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica
  ORGANISM  Salmonella enterica subsp. enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3373)
  AUTHORS   Huang,T.-W.
  TITLE     Whole-genome sequencing of ceftriaxone-resistant Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3373)
  AUTHORS   Huang,T.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-NOV-2020) Department of Microbiology and Immunology,
            School of Medicine, College of Medicine, Taipei Medical University,
            No. 250, Wuxin Street, Taipei 11031, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 300x
            Sequencing Technology             :: Illumina, Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/01/2023 16:36:58
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,796
            CDSs (total)                      :: 4,681
            Genes (coding)                    :: 4,566
            CDSs (with protein)               :: 4,566
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 48 of 115
            Pseudo Genes (incomplete)         :: 84 of 115
            Pseudo Genes (internal stop)      :: 17 of 115
            Pseudo Genes (multiple problems)  :: 30 of 115
            Pseudo Genes (short protein)      :: 1 of 115
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP065086.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3373
                     /organism="Salmonella enterica subsp. enterica"
                     /mol_type="genomic DNA"
                     /strain="SENT0144"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:59201"
                     /plasmid="pS144-3k"
                     /geo_loc_name="Taiwan"
                     /collection_date="2019-08"
     gene            complement(<90..554)
                     /locus_tag="I0P31_RS23960"
                     /old_locus_tag="I0P31_23825"
                     /pseudo=""
     CDS             complement(<90..554)
                     /locus_tag="I0P31_RS23960"
                     /old_locus_tag="I0P31_23825"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(544..867)
                     /locus_tag="I0P31_RS23965"
                     /old_locus_tag="I0P31_23830"
     CDS             complement(544..867)
                     /locus_tag="I0P31_RS23965"
                     /old_locus_tag="I0P31_23830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001696562.1"
                     /translation="MLTIRVTDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     APPLLRHLAAIGNNLNQTARKVNSGQWSSIDRVHVVAALMAIEGELRQLRQAVREQGVR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            931..1122
                     /locus_tag="I0P31_RS23970"
                     /old_locus_tag="I0P31_23835"
     CDS             931..1122
                     /locus_tag="I0P31_RS23970"
                     /old_locus_tag="I0P31_23835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165979.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNDLDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(2439..2672)
                     /locus_tag="I0P31_RS23975"
                     /old_locus_tag="I0P31_23840"
     CDS             complement(2439..2672)
                     /locus_tag="I0P31_RS23975"
                     /old_locus_tag="I0P31_23840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137389.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHEVTQRNNA
                     ILNERVVILSQQVQRLAGQVDRLSRLFIANNS"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2679..3239)
                     /locus_tag="I0P31_RS23980"
                     /old_locus_tag="I0P31_23845"
     CDS             complement(2679..3239)
                     /locus_tag="I0P31_RS23980"
                     /old_locus_tag="I0P31_23845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067487.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKKQLDTLSTTVSMQFSTTEAELSRQQKKLLWRVIKGRILFPALTA
                     LSVTGGIFLGCWGLMEWQESKIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     Typing          complement(1204..1284)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="86.585"
                     /coverage="93.0"
                     /evalue="4.04e-16"
     Typing          complement(4..554)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.37"
                     /coverage="99.0"
                     /evalue="2.3e-118"
     Typing          complement(2357..3372)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="89.826"
                     /coverage="99.0"
                     /evalue="6.97e-178"
ORIGIN
        1 ccggcatggt aaagagcctc aagaccccgt gtaatcgctt ctgcggcctc ctgtttcgct
       61 tttggcagat tatttggcgt gacaagcgtc cgtctgttct ccggtgcgtt cgggtcacgc
      121 agcccgtaat gatgattaac cagcgtctgc caggcattta tcctcggcct gtccgcacgg
      181 tcgtagtacg gctggaggcg cttaccgctc tgtagctcca tgttcgggat gacaaaattc
      241 agttcgagcc gccccttatc ctggtgttcc acccagagaa tgctgtactg gtctttttcg
      301 agaccgggca taagaacacg ctcaaagctc gtcatcactc tttcgcgttc acccggtggt
      361 agctccttct ccgcgaacga cagaacgcct gacgtgtatt tcttcgaaaa tggcgtggaa
      421 tcaatgagtt cccgcacttc ttccgggtta ccccggagca ccgttgcgcc ttcgcggtta
      481 cgctcccgcc ccagcaggta atcgaccggg ccacttccac cgcctttccc cctggcatga
      541 aatttaacta tcatcccgta ccccctgttc cctgacagcc tgccgcaact ggcgcaattc
      601 accctcgatg gccatcagtg cggccaccac atgaacccgg tcaatcgaag accactggcc
      661 gctgttcacc ttccgggctg tctggttcag gttgttcccg atggcagcca gatgccgcag
      721 caatggcggt gccagtgtcg gcagttttcc tgtgcgtgca accggctccc ccagacagac
      781 ccgccgcatc cattccgcca gtcgtttacc ctcgcagcgt tccagtaacc gggcgtgctc
      841 ctcatcggta acccgtatcg tgagcatctt ctcgcgtttc atcggtatca ttccccctaa
      901 caaatccccc atacaaggag ccttaagacc atgaccaaac aggaaaaaac agcccttaac
      961 atggctcgct ttatcagaag ccagacgcta accctgctgg aaaaactcaa cgatctggac
     1021 gcggacgaac aggcagacat ctgcgaatca cttcacgacc acgccgacga actctaccgc
     1081 agttgcctcg cacgcttcgg cgatgacggt gaaagcaact gaaacatgta gctcccggag
     1141 acgttcacag cttgcctgtg agcggatgcc gggagcagac aagcccgcca gggcgcgtca
     1201 gtgcgggtgt cggggcgcag ccctgaccca gttcacagag cgatagcgat gtgtatactg
     1261 gctttcctca ttttgcatcg gtgcagagtg gatgggaagt gcaccatgtc aggagtaaaa
     1321 agccgcacag atgcgtaaaa acagcgcgcc cgataaacaa cacacacgcg gacactggca
     1381 caggcgcgta agtgcacaat gcttgcctct gtgactcttc cgcttcctcg cccactcgct
     1441 cactacgttc ggtcgctggg gctgcggcga gcggtgggat cactctcgtt gtgatgcaga
     1501 tccgtttttt tttttgcact ggagttatca ggagtagcgg tgcacatggg atcgtgcgat
     1561 atgctggatg gtggaaggtc ggagggaacg gcaacaactc acccctccca gtgaagggac
     1621 gggtagtttg ccgctctcga tatgccggac ggagccaagg ccatcgatca cggggcgcgt
     1681 cagtggaaga acccgcgcct gcgtgacgta tgcgtcttcg ccgcaccatc tcacccgtca
     1741 cgccaccaca taccgggaac tgccgccaag gtctaactca accaatctag ccgcgctaca
     1801 tacggttttt gtggcaactc atcaggtgtc cgctgtcgat gaaactctct gcgccggtag
     1861 cggaactctc acgcgtgcgg tcgccgtcgt cacagctccc ccaaccgcaa acgattctcg
     1921 caaatacgca agtatctgca aaaacaggtt tttttcgggg ttcctgggag actgtgctgt
     1981 tgaaaaattc ttgaagaata cagaaggctc atgcaaactg aatgaactgg tttctgttgt
     2041 ggatctcaac agtttccaca ggaacattga ggaggtcaga gacctcaatg aacccgaaac
     2101 agctcgcctt cctggcgagc tgttttcgtt ctacgcccgc cgacgaaaga tcgcaagtgc
     2161 aataacgaga tttttcacgt ctttacgctc aaaaagtaaa aaaaccatgt tttcccctgg
     2221 ctgaatcccc aaaaacgcgt gaaatgcgtt ttcaggatgt tgcatagcta tgcacaaata
     2281 cggcacacga tttgtttcgc tcgcccctgc cgtcgaacgg gtcaaaatgg caagatttcg
     2341 tcacttcccc ggtcacatct ccattgatgg cccactccga acccgtgccg cgcgttcctg
     2401 tacctcatgt ctgtaccggg cacgctcctg ttcatccctt agctgttgtt cgcgataaat
     2461 aaccgactca agcgatccac ttgcccggct aatctctgca cctgctgact caatatcacg
     2521 acgcgctcgt tcagtatcgc gttgttccgt tgcgtaacct cgtgcatctt ctgcaattcc
     2581 gcgaaggcgc tctcccactc gttcagccgc cgcatatagt cctgttgcaa atgctctaag
     2641 gcgttcagca aatgcccttc cagttccgtc atactcgttt actccctgac cagcctcacg
     2701 gcgttcttgt cgcccaccgt ccaggtgttt tcccctttca ccccgtccgg cagcaccaga
     2761 aatttcccgt tctcgccatt gacgaacgtc accccccagg tttttgcctc gagtttcgcc
     2821 agcgtgtttt cctgctctct gatagtcagg atatttttcg caatcttgct ttcctgccac
     2881 tccatcagcc cccagcaccc caggaaaatc ccgcccgtga cgctgagcgc ggtcagcgcc
     2941 ggaaacagta tccgcccttt gatcacccgc cagagcagtt ttttctgctg ccgggacagt
     3001 tcggcctctg tggtgctgaa ctgcatgctc acggtggtgc tcagcgtatc cagttgcttt
     3061 ttcacggatg ttgtatgttc gctgatagcg tctctgattt tctgcctgtt taagctcaat
     3121 gccttgtcta cagactcttc gagcttcctg aactcgctgt tcagcatgtt ctcggtagaa
     3181 gcggctcgct ctttcagttt cttctcgaag tctgttccca tttgtaaaag attgctcata
     3241 cagcgccccc tttagcctga gattccgccc cccctccggg tcggcaatac tgatgctgct
     3301 tttggttgtc ctcaccacct caaaacctgc cgctgtaagc gcctctgtga catcctgacg
     3361 cgtttttatt gct
//
