LOCUS       NZ_CP065075             3172 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica strain SENT0180 plasmid
            pS180-3k, complete sequence.
ACCESSION   NZ_CP065075
VERSION     NZ_CP065075.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16807089
            Assembly: GCF_031038915.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica
  ORGANISM  Salmonella enterica subsp. enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Huang,T.-W.
  TITLE     Whole-genome sequencing of ceftriaxone-resistant Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3172)
  AUTHORS   Huang,T.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-NOV-2020) Department of Microbiology and Immunology,
            School of Medicine, College of Medicine, Taipei Medical University,
            No. 250, Wuxin Street, Taipei 11031, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 190x
            Sequencing Technology             :: Illumina, Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/01/2023 16:05:07
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,600
            CDSs (total)                      :: 4,485
            Genes (coding)                    :: 4,352
            CDSs (with protein)               :: 4,352
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 46 of 133
            Pseudo Genes (incomplete)         :: 97 of 133
            Pseudo Genes (internal stop)      :: 30 of 133
            Pseudo Genes (multiple problems)  :: 36 of 133
            Pseudo Genes (short protein)      :: 1 of 133
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP065075.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Salmonella enterica subsp. enterica"
                     /mol_type="genomic DNA"
                     /strain="SENT0180"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:59201"
                     /plasmid="pS180-3k"
                     /geo_loc_name="Taiwan"
                     /collection_date="2019-10"
     gene            complement(125..655)
                     /locus_tag="I0P22_RS22990"
                     /old_locus_tag="I0P22_22835"
     CDS             complement(125..655)
                     /locus_tag="I0P22_RS22990"
                     /old_locus_tag="I0P22_22835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_140018423.1"
                     /translation="MASTEEGLLTLLLSVEHLKNTAIEQQKAVADTLAVARETLRGYRD
                     ISDSVVKQVSDEVRKGVQKTDIAGLMGERMTQDFQRLEETVAKMRANAEALNKDIATIH
                     HNVVKEYNTLNKYSLKWFIGVTVSFLVMFSLLGWFTKTLIDRNYTATEVVYQKIVDIEK
                     KLDKPAIGKSRKN"
                     /name="hypothetical protein"
     gene            complement(667..1620)
                     /locus_tag="I0P22_RS22995"
                     /old_locus_tag="I0P22_22840"
     CDS             complement(667..1620)
                     /locus_tag="I0P22_RS22995"
                     /old_locus_tag="I0P22_22840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001360358.1"
                     /translation="MATYHLNVKFGGKGQAGNHADYIERKGEYEKRKDLEYSEHGNMPG
                     WARDNPSHFWQAADQFERANGSTYREIEIALPRELTPDQRIELVQDFVRQVAGERHAYS
                     FAIHNPKASIDGGEQPHAHIMMSQRINDGMERSPEQYFRRYNAKNPERGGAKKDSGNLT
                     PTQQKEQLRTLRASWSALQNEHLARHGHRVRVDHRSLEERGIKRTPERHFGFAASSRLD
                     HAQRREILQNRAQPLEHFLEKAHSVRHQFDAQVQQKELVKTLLQDVARERGHALTARIN
                     KTGEVEFERAPTRTRSNTRGHGMGIRDNSRGYDYER"
                     /name="MobA/MobL family protein"
     gene            1799..2194
                     /locus_tag="I0P22_RS23000"
                     /old_locus_tag="I0P22_22845"
     CDS             1799..2194
                     /locus_tag="I0P22_RS23000"
                     /old_locus_tag="I0P22_22845"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001222910.1"
                     /translation="MRISNIDWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNELQAQENARKQANQKRMEGKTQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELRYPKDNILQKLKAIRLDLETSPDHH"
                     /name="hypothetical protein"
     Typing          complement(671..1620)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.685"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cgcgatctgt ttcgagcgtt cagaagggcg aacgggtcaa aacagcaaac tttctcatca
       61 gaaaacggtg aacgggacgc ggaatttttt cgcgtcccgt gaggcgttgg acaagcgaag
      121 cgcgtcagtt tttccggctc ttccctattg ctggtttgtc cagtttcttt tcaatatcaa
      181 caattttctg atacacgacc tccgtcgcgg tgtagttcct gtcgatcaac gttttggtaa
      241 accagccaag caacgagaac atgaccagaa aactgaccgt aacaccgata aaccatttca
      301 gactgtattt attgagcgtg ttgtattctt taacaacatt gtgatgaatt gtcgcaatgt
      361 ccttgttaag cgcctccgcg ttggctctca tctttgccac agtctcttca agacgctgaa
      421 aatcctgggt catgcgctca cccatcagcc ccgcaatgtc cgttttctgt accccttttc
      481 tgacttcatc gctaacctgt tttacaacac tgtcagaaat atcccgatac ccccgcagtg
      541 tttcccttgc gaccgccagc gtgtctgcaa ccgctttctg ttgttctatc gcagtgtttt
      601 tcaaatgctc aacggacaac aagagcgtga gcaacccctc ttctgtactc gccatacagt
      661 ccccttttaa cgttcgtagt cgtacccgcg tgagttgtca cgaatgccca tgccgtgccc
      721 tcgcgtgtta ctccgcgtcc gcgttggcgc acgttcaaat tcaacttcac ctgttttatt
      781 tattcttgcc gtaagcgcgt gccctcgctc ccgtgcgacg tcctgtaaaa gcgttttaac
      841 taactctttt tgctgaactt gtgcatcaaa ttgatgacga accgaatgcg ctttctctag
      901 aaaatgttcg agcggctgcg ctcggttttg caggatttcg cggcgctgcg catgatcaag
      961 ccgtgatgag gcggcaaatc cgaaatgccg ttctggtgtg cgtttaattc cgcgttcttc
     1021 cagtgagcga tggtcaacgc gcaccctgtg accatgacgc gctaaatgct cgttctgtaa
     1081 cgctgaccag ctcgcccgta acgtccgcaa ttgctctttt tgctgagtcg gtgtcagatt
     1141 gcctgaatct ttttttgcgc ctccccgttc gggattcttg gcgttataac gccggaaata
     1201 ctgttccggc gaacgttcca taccatcgtt aatacgctgg ctcatcatga tatgcgcatg
     1261 aggctgttcc cctccgtcaa tgctcgcttt tggattgtga atggcaaagc tataggcgtg
     1321 ccgttctcca gctacctgac gcacaaaatc ctgcaccagt tcaatgcgct gatccggtgt
     1381 cagttcacgc ggcaaggcga tttcgatctc ccgataagtc gaaccattcg cacgttcaaa
     1441 ctgatcagcc gcttgccaga aatgggaggg attatctcgc gcccagcctg gcatattccc
     1501 gtgctctgag tattccagat cttttcgttt ctcgtactcg cctttgcgtt cgatgtaatc
     1561 ggcatggttt ccggcctgtc ccttgccgcc aaattttaca ttgaggtgat aggttgccac
     1621 ggtgttagcc ctccgcagga gcgcacatgt ttctgagcca acggcgaaga aacatataag
     1681 tgcgcttcct tctaatttta cgaattagca cggaagatac cccctgcacc caccgaccgc
     1741 aagcgatata ctgcacaacc ccaacacacc gcaaaaaaca ccagggagca tcccaaacat
     1801 gcgcatcagc aacatcgact ggttgaagaa acgaatcggc tttatcagga agctcggaga
     1861 acagaccgca cgacagaggc agatcattga cctgctcgat aacgaagccg gactaacaga
     1921 acaggagcgc aaactactcc acgtcctggc aaccgcagaa aaaaacgagc tacaggcaca
     1981 ggagaacgca cgcaaacagg ccaaccaaaa acggatggag gggaaaacac aacgacggga
     2041 acgcaatcac cgcctgtttc ttgcggcggg gttactgatc gaggccggac tagtggacac
     2101 aaaaacaggc gaactgagat acccaaaaga caatatatta cagaaactta aggcaatcag
     2161 gctcgatctt gaaacaagcc cagatcatca ttaattccgc tgcgtggtgg tgcgtttgcc
     2221 tgccggtgtt caatgttttc gatttcgcga cgcgctacgc gcggatctgg cataggtgcg
     2281 tacgtgctca atgtggtttc cggttcactt ccgcttcctc gcccactcgc tcactacgtt
     2341 cggtcgctgg ggctgcggcg agcggtggga tcactctcac atgatgcaga tccttttttt
     2401 tttttgctct ggagttatca gttgttgcgg tgctcatggg atcgtgcgat atgctggatg
     2461 gtggaaggtc ggagggaacg gcaacaactc acccctccca gtgaagggac gggtagtttg
     2521 ccgctctcga tatgccggac ggagccaagg ccatcgatca cggggcgcgt cggtggaaga
     2581 acccgcgcct gcgtgacgta tgcgtcttcg ccgcaccatc tcacccgtca cgccaccaca
     2641 taccgggaac tgccgccaag gtctaactca accaatctag ccgcgctaca tacggttttt
     2701 gtggcaactc atcaggtgtc cgctgtcgat gaaactctct gcgccggtag cggaactctc
     2761 acgcgtgcgg ttgccgtcgt cacagctccc ccaaccgcaa acggtctttg caaacacgca
     2821 atcatctgca aaaacaggat tttttcggga ttctggggag gctgtgcggt cggtaatgct
     2881 tgaagaatac agaaggttca tgcaaactga atgaactggt ttccgttgtc gccgcaacag
     2941 actccacagg aacattgagg aggtcgaaaa cctcaatgaa cccgaagaag ctcgcctaac
     3001 ggcgggcttt tttcgttcta cgctccctga cgaaagatcg caagcacaat aacgcgattt
     3061 ttcacgcttt tacgctcaaa acatcaaaaa accatgcttt cccccacccc tacctcaaaa
     3121 aacgcgtcag aatcgttttc atgagcctgc ataactattc acgaaagcaa tg
//
