LOCUS       NZ_CP065068             2444 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica strain 1-E6 plasmid pE6-2k,
            complete sequence.
ACCESSION   NZ_CP065068
VERSION     NZ_CP065068.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16807067
            Assembly: GCF_031036835.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica
  ORGANISM  Salmonella enterica subsp. enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2444)
  AUTHORS   Huang,T.-W.
  TITLE     Whole-genome sequencing of ceftriaxone-resistant Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2444)
  AUTHORS   Huang,T.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-NOV-2020) Department of Microbiology and Immunology,
            School of Medicine, College of Medicine, Taipei Medical University,
            No. 250, Wuxin Street, Taipei 11031, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2019
            Assembly Method                   :: HGAP v. JAN-2019
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 260.0x
            Sequencing Technology             :: Illumina; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/01/2023 16:09:51
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,233
            CDSs (total)                      :: 5,111
            Genes (coding)                    :: 4,979
            CDSs (with protein)               :: 4,979
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 33 of 132
            Pseudo Genes (incomplete)         :: 112 of 132
            Pseudo Genes (internal stop)      :: 17 of 132
            Pseudo Genes (multiple problems)  :: 28 of 132
            Pseudo Genes (short protein)      :: 1 of 132
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP065068.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2444
                     /organism="Salmonella enterica subsp. enterica"
                     /mol_type="genomic DNA"
                     /strain="1-E6"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:59201"
                     /plasmid="pE6-2k"
                     /geo_loc_name="Taiwan"
                     /collection_date="2015-10"
     gene            complement(join(2246..2444,1..32))
                     /locus_tag="I0P19_RS26155"
                     /old_locus_tag="I0P19_25960"
     CDS             complement(join(2246..2444,1..32))
                     /locus_tag="I0P19_RS26155"
                     /old_locus_tag="I0P19_25960"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_140424895.1"
                     /translation="MMNAEDKLFKNVDRLMLHDSLKKNEVLTVWERTFLSSVYSIYRRT
                     SGNKYSTKGLSPKQKNAAFSILKKHGYHLND"
                     /name="hypothetical protein"
     gene            complement(19..501)
                     /locus_tag="I0P19_RS26160"
                     /old_locus_tag="I0P19_25965"
     CDS             complement(19..501)
                     /locus_tag="I0P19_RS26160"
                     /old_locus_tag="I0P19_25965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001565850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_223375251.1"
                     /translation="MNTKKISRLERHTYMDENGEVKQDSKIETFSIPAEPPYVKLYIAD
                     IAMIHGLSKSQNDVLLQLAMLIGWDGFVSVSKTRFEKTIQPRVHIEYQTFKNIIAALVD
                     KQIFFRAGRGELEANPFLFARGDWPSIYERRKKIELKISYDTNGRTVQTKVMDDEC"
                     /name="hypothetical protein"
     gene            1208..2176
                     /gene="mobV"
                     /locus_tag="I0P19_RS26165"
                     /old_locus_tag="I0P19_25970"
     CDS             1208..2176
                     /gene="mobV"
                     /locus_tag="I0P19_RS26165"
                     /old_locus_tag="I0P19_25970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000024818.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_000024818.1"
                     /translation="MANYAIMRCKKLTGMGSVASALQHCYRERETPNANAERTPENYCS
                     VSKSTDQAMGRVRELLPEKRRKDAVLAVEYVMTASPEWWKEATPRQQAEFFARSEQWLE
                     KKYGKDRVVAAVVHRDEATPHLSAFVVPLTQDGRLSAKEFIGGRSKMREDQSTYAESVK
                     KLGLERGIEGSRATHQTVQHYYESINRGTRSQVSISPEALEPRVLRKGIFTKDVEDQAA
                     IAKRLSHAVNDGFAGTIAMASQSAQNAKRARELQKTMDAQQKRLQSVTEPFKGLSREQM
                     TEILMMAQRFKQQNQEKEKQQRIEREKQRQTRSRGMGGMER"
                     /name="mobV"
     Typing          1200..2173
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.077"
                     /coverage="96.0"
                     /evalue="0.0"
ORIGIN
        1 tttttaaaaa gtttatcttc agcattcatc atccattacc ttcgtctgca cggttcttcc
       61 attggtgtca taactgatct ttaactcaat tttctttctt ctttcgtaaa ttgatggcca
      121 gtctccccgt gcaaaaagaa aggggttagc ttcaagttcc ccacgccctg cccggaagaa
      181 tatttgttta tctacaagag ccgcaattat gtttttaaag gtctgatatt caatatgaac
      241 cctgggctgt atggtttttt caaatctagt ttttgataca gacacaaacc catcccatcc
      301 aatcagcatt gccaattgta aaagcacatc attttgagat tttgataaac catgaatcat
      361 cgcaatgtct gcaatgtata gcttgacgta gggaggttcg gctgggatgg aaaaggtctc
      421 gatcttagag tcttgtttta cctcaccgtt ttcatccatg tatgtatgcc gttcaagcct
      481 agaaatcttt ttcgtattca ctccagcccc acgtttcgcc atgatttagt actcgcattt
      541 aagtactaaa gagacataca gtcaagtcct ttgtatcaag tacgattagt acttgaggtg
      601 agtacgatta gtccttgagg tgagtacgat tagtacttga ggtgagtacg attggtactt
      661 gaggtgagta cgattcttcg ctctagccct tggtacaagc gggttcccat atctatatct
      721 atatattaag ggggaaaata agggctgaaa aacggcattt ttagacactg aaaaactgcc
      781 tttttttagc aaggagtgta cgcatttcta tgtacgggga gtggaaattc cgcttcctcg
      841 ctttggctgt tcgttcctcg tcgcgttgct cctgcggtac gcctcagcca aagctgcggc
      901 gagcggttcc tgctctttca aagacgattt cattgcctga tttcgtcaag ggcgagcgta
      961 gcgagtgcca tttacccttg acgacactcc ggataaaaca ggcttggcag tggtgggggg
     1021 tggcgcgaag cgacgccttc cacctgccag accgccgttg attttgacct tctggcagct
     1081 tgctgcccga acgattttgc gtagcaaagt ctagtgagta cactatcatc ttgatagtgg
     1141 cccgccggag gtatcgcaat gcgctccccc gcctggctga atgaatgccg gaatcagggg
     1201 ggggaacatg gcgaactacg cgataatgcg ctgcaaaaag ctgacgggaa tgggaagcgt
     1261 ggccagcgcg ttgcagcact gctaccgaga gcgtgagacg ccgaacgcta acgctgaacg
     1321 gacaccagaa aactactgct ctgtgtccaa atcaacggat caggcaatgg ggcgtgtgcg
     1381 ggagctgctg ccggaaaaac gccgtaaaga tgcggtactg gccgttgaat acgttatgac
     1441 agcaagccct gagtggtgga aagaggccac accacggcag caggcggagt ttttcgcccg
     1501 ctctgagcaa tggctggaga agaaatacgg gaaggatcgt gttgtggcgg cggtggttca
     1561 ccgggacgag gccaccccgc acctgtctgc gttcgtggtg ccattgacgc aggatggacg
     1621 gctgtccgcg aaagagttta ttggcgggcg gtcaaagatg cgtgaagatc agagcaccta
     1681 cgctgaatca gtaaaaaaac tgggtcttga gcgcggcatc gagggaagcc gcgccacgca
     1741 tcagacagtt cagcactact acgaatcgat aaaccgtggc acccgtagcc aggtatcgat
     1801 ctcgccggag gcgctggagc cgcgtgtatt gcggaagggc attttcacca aagacgtgga
     1861 agatcaggca gccatagcca aacgtctaag ccacgcagtg aacgatggct ttgcaggaac
     1921 catcgctatg gcctctcaga gcgcccagaa cgcaaaaaga gcgcgtgagc tacagaagac
     1981 tatggatgcg cagcagaaac gcctacagag cgtcacagag ccttttaagg ggctttccag
     2041 agagcagatg accgaaatcc tgatgatggc tcagcggttt aagcagcaaa accaggaaaa
     2101 ggaaaaacag cagcgtattg aacgtgaaaa acagcgacag acgcgatcgc gtggcatggg
     2161 tggtatggag cgttagtttt gatgcgatgc aggatagggc taacgccgca aagtgacgtc
     2221 atttgcggca ttcaccacga aaaaattaat cattcagatg gtaaccatgt ttttttaaaa
     2281 tagaaaaagc tgcgtttttc tgctttggtg acaaaccctt agttgagtat ttattaccgc
     2341 tagttctacg atatatgctg taaacactgc ttaaaaaagt acgctcccaa acagtcagaa
     2401 cctcattctt ttttagtgaa tcatgcagca ttagcctgtc taca
//
