LOCUS       NZ_CP065067             5080 bp    DNA     circular CON 03-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica strain 1-E6 plasmid pE6-5k,
            complete sequence.
ACCESSION   NZ_CP065067
VERSION     NZ_CP065067.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16807067
            Assembly: GCF_031036835.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica
  ORGANISM  Salmonella enterica subsp. enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 5080)
  AUTHORS   Huang,T.-W.
  TITLE     Whole-genome sequencing of ceftriaxone-resistant Salmonella enterica
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5080)
  AUTHORS   Huang,T.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-NOV-2020) Department of Microbiology and Immunology,
            School of Medicine, College of Medicine, Taipei Medical University,
            No. 250, Wuxin Street, Taipei 11031, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2019
            Assembly Method                   :: HGAP v. JAN-2019
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 260.0x
            Sequencing Technology             :: Illumina; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/01/2023 16:09:51
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,233
            CDSs (total)                      :: 5,111
            Genes (coding)                    :: 4,979
            CDSs (with protein)               :: 4,979
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 33 of 132
            Pseudo Genes (incomplete)         :: 112 of 132
            Pseudo Genes (internal stop)      :: 17 of 132
            Pseudo Genes (multiple problems)  :: 28 of 132
            Pseudo Genes (short protein)      :: 1 of 132
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP065067.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5080
                     /organism="Salmonella enterica subsp. enterica"
                     /mol_type="genomic DNA"
                     /strain="1-E6"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:59201"
                     /plasmid="pE6-5k"
                     /geo_loc_name="Taiwan"
                     /collection_date="2015-10"
     gene            join(4319..5080,1..537)
                     /gene="mobQ"
                     /locus_tag="I0P19_RS26135"
                     /old_locus_tag="I0P19_25940"
     CDS             join(4319..5080,1..537)
                     /gene="mobQ"
                     /locus_tag="I0P19_RS26135"
                     /old_locus_tag="I0P19_25940"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_243812768.1"
                     /translation="MAIYYFDVSNVSRNSGKKSASSVAASAYQNRARYTDERTGTTYDY
                     TKKGGLYYSGILAPENAPESLTASPLTLWNTIEAIEKRKDARLAKDFKISLPIELSPEQ
                     NKALILDFAKQAFVSNGMIVDLAIHDIDTQPHSHIKTTTRELTPEGFGKKEREWDKKET
                     TLYWRELWAKVANEHLLKAGHDITISHLTLKEQMKEALEEMDKTTNLEEKIKLASKAIE
                     LNRPAMKTISKKDWGDPKFQAIRKQEQEAKKQILKKAKNFRIKNTRELKEIQTELNKKF
                     RPSKIYKSVSEAIKNLNNKITDSKLNNILNDKLDKLNETIKSVPDKIKHSIEKRKIKKE
                     NKKRERMNKEEEKIFRETHKMDEFGNIYNIEDDKKWNKENNKLIKQQTASNKAKAEEER
                     ERKKLEDEANRLAEKNNISPNDFKQKKKKGLGI"
                     /name="mobQ"
     gene            complement(708..2312)
                     /locus_tag="I0P19_RS26140"
                     /old_locus_tag="I0P19_25945"
     CDS             complement(708..2312)
                     /locus_tag="I0P19_RS26140"
                     /old_locus_tag="I0P19_25945"
                     /inference="COORDINATES: protein motif:HMM:NF013603.3"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_308416074.1"
                     /translation="MFTGTSVFNKNRSVKRPENLKEFASVNGERITERKKETFNVALSI
                     KDKGEELQDETLTKRAERSLKCSSFRYVATVNGQAQTLFTHRCKGRHCQECQRIKAYIW
                     QKKTESIFPKLEENYLNAKYLFATFTIKNPKITDLRVVLSVMNKAANRLFKMKKYKDFI
                     LGGIRSTEITRGKSGADECHPHFHFLLMVKGNYGKKYYVNQEDWGKDWGDCLAYECDRV
                     GYPYNPVDYPRGFPIVDVVRAMDKEKKIEITNKNIKNSGEAIINYVLKYSVKGSDILDH
                     KKGKNDDWFFEFDKQIKGCRMITPVGVFKKYLSEIKKDPFDYEIEKAKIEERLGEGYQV
                     NKAIFKKGDYKLENKKDNEGYLLEALEAKAYNFQQLYLTIYSDYIKFYNATNKEIFKLE
                     HKLEEIYFNDIELEKYELKLMRLLSIQENRKSSLIQENRKRRIKNKITEIYNKAKENIE
                     FKIPLEEKLGRLLLIQEERKKRINNTIESLRRVGYLKEEKGLYYDEWGSLWATFEIEKP
                     NIEIVEINDFADMFEVW"
                     /name="protein rep"
     gene            complement(3215..3517)
                     /locus_tag="I0P19_RS26145"
                     /old_locus_tag="I0P19_25950"
     CDS             complement(3215..3517)
                     /locus_tag="I0P19_RS26145"
                     /old_locus_tag="I0P19_25950"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_101866522.1"
                     /translation="MRRTPEQRKAYLEAQLNSVKAKINKQKRKDYTVKKRETDHLKYTF
                     AGDILKVMGCDVREVDLSLILGAVFYATSENANPKNVEIYRKKGLEILKENKKEI"
                     /name="hypothetical protein"
     gene            complement(3514..4056)
                     /locus_tag="I0P19_RS26150"
                     /old_locus_tag="I0P19_25955"
     CDS             complement(3514..4056)
                     /locus_tag="I0P19_RS26150"
                     /old_locus_tag="I0P19_25955"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_308416073.1"
                     /translation="MVRRKITVSEKTKALFKPFFDVSSYKEKKEGFEEEEYKRLVELCF
                     KSMGKGKLSINRPMATGKGILTFIYRTDKDLLLDEFIDRFEKKITKKRYMDFLLFILVD
                     DTKNIEKIEKMFTRICGVDIEDNVLKAIKCLKADGYDYKGFGDLIDYFEGLKRVRLEKE
                     ELNKIMASSKNKKRGRL"
                     /name="hypothetical protein"
ORIGIN
        1 atattaaaaa aggctaaaaa tttccgaatt aaaaacacaa gggaattaaa agaaatacaa
       61 acggaattaa ataaaaaatt tagaccgtca aaaatatata aatctgtatc ggaggctatt
      121 aaaaatttaa acaacaaaat caccgactca aaattaaaca atattttaaa tgataaatta
      181 gataaattaa acgaaacaat aaaatcagtt cctgataaaa taaagcattc catagagaag
      241 agaaaaataa aaaaagaaaa caagaaaaga gaaagaatga ataaggaaga ggaaaaaata
      301 tttagagaaa ctcacaaaat ggatgagttc ggaaatattt ataatataga ggacgataaa
      361 aaatggaata aggaaaataa taaacttatt aaacagcaaa cagccagtaa taaagcaaaa
      421 gccgaagaag aaagagagag gaaaaaatta gaggacgagg ctaacagact ggctgaaaaa
      481 aataatattt cacctaacga ctttaagcaa aagaaaaaga aagggttagg tatatagagc
      541 tatatactac aatatactat actactcttt ctttaaaatt gtgatccttg ctggctcaat
      601 gtttcctttc gaaatttcga cggcttcacg aactgaagct aagagcattt taaaaaattt
      661 gctctttctg ttcctatttc tttttttagg cttctgtttc tttttcatta ccacacctca
      721 aacatatcag caaaatcatt aatttccact atttcaatat taggtttttc aatttcgaat
      781 gttgcccaaa gcgatcccca ttcgtcatag taaagccctt tttcttcttt aaggtaacct
      841 accctcctca ggctttcaat tgtattgtta attcgttttt tcctttcctc ttgtatcaat
      901 aataatcttc ccaatttttc ctcaagaggt attttaaact caatattttc ttttgctttg
      961 ttataaattt cagtaatttt attttttatt cttctttttc tattttcttg tattaatgag
     1021 ctttttctat tttcctgaat tgataataat ctcattaatt ttaactcata tttttcaagc
     1081 tcaatgtcat taaaataaat ttcttcaagt ttatgctcta atttaaatat ctctttatta
     1141 gtggcattat agaacttaat ataatcacta tatatagtta aatataattg ctggaaatta
     1201 taggcttttg cttccaatgc ctctaataaa taaccttcat tatctttttt attttcaagt
     1261 ttataatcgc cctttttaaa tatagcttta ttaacctgat aaccttcccc caatctttct
     1321 tctatttttg ctttttcaat ctcataatca aacggatctt ttttaatttc gcttagatat
     1381 tttttaaaaa ctccaacagg tgttatcatt cgacaacctt ttatttgctt atcaaattca
     1441 aaaaaccaat cgtcattttt tcccttttta tggtctaaaa tatcactacc tttgacggaa
     1501 tattttagaa cataatttat aatcgcttca cccgaatttt taatattctt gtttgtgatt
     1561 tcaattttct tttctttatc catagctcta acgacgtcca cgattgggaa cccacgagga
     1621 taatcgacgg ggttatacgg ataccctacc ctatcacact cataagccag gcaatccccc
     1681 caatctttcc cccaatcttc ttgatttaca tagtattttt taccgtaatt cccttttacc
     1741 attaacaaaa aatggaagtg tgggtgacat tcgtcagccc cagattttcc ccttgtgatc
     1801 tccgtcgaac ggatacctcc aagaataaaa tctttatatt ttttcatttt aaaaagtcta
     1861 tttgctgctt tattcattac agataaaaca acccttagat ctgttatttt tgggttttta
     1921 atcgtaaatg tcgcaaataa atattttgca tttaaataat tttcttccag ttttggaaaa
     1981 atagactctg tttttttctg ccagatataa gccttgattc tttggcattc ctggcaatgg
     2041 cgacctttgc aacggtgagt aaataaggtt tgagcctgtc cgttaacagt tgcgacataa
     2101 cggaaagaag aacactttaa agacctttca gcccttttag ttaatgtctc gtcttgtagt
     2161 tcttcgccct tatctttaat agataaagcg acattgaaag tttctttctt tctttctgtt
     2221 atccgttcac cgttaacact ggcgaactcc tttaaatttt ccggtctctt gacagaccta
     2281 tttttattaa atacacttgt ccctgtaaac atattaagaa ataccccgta ttgtatgaat
     2341 ctagacaatt cccactttac ggggtttttt ctttttgtca aaccactcaa gcacttacac
     2401 gatccccctc taattttctc ccaccggcta aaagtcgata ccgtcccatt ttttccgtgt
     2461 ttttatgccg ttacggttgg aaccgtccca tttttcacac caaaaaaacg gtgtttgaaa
     2521 tgttccgtcc caaatctgcc gtttgtcgga tagtgatcta aaggttccgt cccatttttt
     2581 ggggtgtttt ggggaggttt agagggtgct gtcccatatc cggggaattg attatttttt
     2641 acccaaaaaa tctttagcaa aaagtgctat ttacccccct taaaaaacac caaaaaaagg
     2701 gggttaaagc cagtaatggc ggggcttgca ggggagtttt agaggctaag ttttgcctcc
     2761 atttgtttct tactaaacaa ggggaggggt cgccttcggc aacctcaaac caaaccccta
     2821 aaaccaaagg caacccctac cggggcaatg gtataggcat ataacttagt tatgcaatcc
     2881 tggacgaatg aacaacattt aaagacggct taacaggtag aaggctcact ttgttcacct
     2941 tccacctttg ccaagtgtgt attgattgga gagccgtaca agtacaaaat cggaaccctt
     3001 aaaagggaac ccccgatttt ctccttgacg gttcggcact ggtgaacggt atcagaaagg
     3061 acgaaaggct aacctaagtt agcctctcca atatccccat aaatggggca aattagccgt
     3121 atatatatta ataaataatt tcttaactct ccacaggaaa ggatactaaa tatataaacg
     3181 actatatatt aaatatattc taattatgtt tttgtcaaat ttctttttta ttttctttta
     3241 aaatttccaa tccttttttt ctatatattt ctacattttt agggtttgca ttttcacttg
     3301 tagcataaaa aacggcaccg agtattaaag acaagtcaac ctcccgaacg tcgcacccca
     3361 taacttttaa aatatcacct gcaaaagtat attttagatg atccgtttct cttttcttaa
     3421 cagtgtaatc ttttcttttc tgcttgttta tctttgcttt tacactatta agctgagctt
     3481 ccaaatatgc ttttctctgt tctggtgttc ttctcataat ctccccctct ttttattttt
     3541 acttgaagcc ataattttat taagttcctc tttttctaat ctaacccttt ttaaaccctc
     3601 aaaataatca attaaatcac caaacccttt ataatcataa ccgtcagcct ttaaacattt
     3661 aatagccttt aaaacattat cttcaatatc taccccacaa attcgagtaa acattttctc
     3721 tattttttct atgtttttag tatcgtcaac caaaataaaa agcaaaaaat ccatatatct
     3781 ttttttagtt attttcttct caaatctatc tataaactcg tctaacaata aatctttatc
     3841 agtcctatat ataaaagtta aaattccttt accggttgcc attggtctat taatactgag
     3901 ttttcctttt cccatacttt taaaacacaa ctcaacgagt cttttatact cttcttcttc
     3961 gaagccttct tttttttctt tgtatgaact cacgtcaaaa aaaggtttaa ataatgcctt
     4021 tgttttttct gatactgtta tttttctcct taccataaaa acctccatta tatttagatt
     4081 aattaataac catatacctc cgcaatttac tttagtcaaa tttatgttat atctaaaata
     4141 aggaaaagca tttttgccgt tctgaaagtt ttttattttg agtttacgaa aaaataaaat
     4201 tacttgaagc ccttctacgc attgcctttg gcaatgacag ggtttttccc cgtaaacggg
     4261 aaaaaagaaa agcaaaaacc aaaccccaaa aaaattagaa aagtggaggt tttacaatat
     4321 ggctatatat tattttgatg tttccaatgt gagtagaaac tcaggcaaaa aatcggcttc
     4381 gtctgttgct gcttctgcat accaaaacag agccagatac acagacgaac gaaccggtac
     4441 aacatacgac tacaccaaaa aaggggggtt atactactca ggcattttag cccctgagaa
     4501 tgcccctgag agccttacag cttcaccgtt gaccctatgg aacaccatag aggctattga
     4561 gaagagaaag gatgccaggc ttgccaaaga ctttaaaatt tccctaccca tagagctatc
     4621 cccagaacag aacaaagcct taattttaga ctttgcaaaa caggcttttg tatcaaatgg
     4681 tatgattgta gatctggcta ttcacgatat agacacccaa cctcatagcc atataaaaac
     4741 aactaccaga gaattaacac cagagggatt tggaaaaaaa gaaagggaat gggataaaaa
     4801 agaaacgact ttatactgga gggaattatg ggcaaaagtg gctaacgaac atttattaaa
     4861 ggctgggcat gatataacca ttagccattt aacattgaaa gaacaaatga aagaagcact
     4921 ggaggaaatg gacaaaacaa ccaacctgga ggaaaaaata aaacttgctt caaaggctat
     4981 cgaattgaat agaccagcaa tgaaaactat cagtaaaaaa gactggggcg atccaaaatt
     5041 tcaggcaata agaaaacagg aacaggaggc aaaaaaacaa
//
