LOCUS       NZ_CP064178             5733 bp    DNA     circular CON 29-NOV-2023
DEFINITION  Klebsiella pneumoniae strain 19110124 plasmid p19110124-5, complete
            sequence.
ACCESSION   NZ_CP064178
VERSION     NZ_CP064178.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16659219
            Assembly: GCF_015353095.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5733)
  AUTHORS   Yao,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-NOV-2020) College of Animal Science and Veterinary
            Medicine, Henan Agricultural University, No.15, Longzihu University,
            Zhengzhou, Henan 450001, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 12.0x
            Sequencing Technology             :: nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/29/2023 06:39:24
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,597
            CDSs (total)                      :: 5,475
            Genes (coding)                    :: 5,349
            CDSs (with protein)               :: 5,349
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 47 of 126
            Pseudo Genes (incomplete)         :: 80 of 126
            Pseudo Genes (internal stop)      :: 15 of 126
            Pseudo Genes (multiple problems)  :: 16 of 126
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP064178.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5733
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="19110124"
                     /isolation_source="Anal swab"
                     /host="swine"
                     /db_xref="taxon:573"
                     /plasmid="p19110124-5"
                     /geo_loc_name="China:henan"
                     /collection_date="2019-06"
     gene            join(5621..5733,1..196)
                     /locus_tag="ISU39_RS27435"
                     /old_locus_tag="ISU39_27435"
     CDS             join(5621..5733,1..196)
                     /locus_tag="ISU39_RS27435"
                     /old_locus_tag="ISU39_27435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012564913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_060628143.1"
                     /translation="MTEKLKGTASVLHETKTYEELVEKHSVEVANGLLANAINTALPNA
                     GITSNDVAGFSKVTIALRTGEVDLAKTAKEANADAAAVSANIIAGLKASQKSKDEIK"
                     /name="hypothetical protein"
     gene            complement(389..1081)
                     /locus_tag="ISU39_RS27440"
                     /old_locus_tag="ISU39_27440"
     CDS             complement(389..1081)
                     /locus_tag="ISU39_RS27440"
                     /old_locus_tag="ISU39_27440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000550475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="WP_071556240.1"
                     /translation="MHLLYVDESGTPSDPTLNHFVLSGISVFEKQTHWIEQEMNAIAAR
                     FNTDDPYERELHGSPMRGGRDGWKNFPFDDRKQAIKDCLTLLTQKHRDIRIFACVVPKG
                     SLGGKDVITESFYQISSRFDMYLSRLHYQGATSRGVAIFDKSSTEKSIQSLARTFKDTG
                     YGYGKLRNFSEVPLFLDSKASRLIQLADLVSYSIFRKFELNDDEFYKIIEHSFDYNNGK
                     VHGLYVAH"
                     /name="DUF3800 domain-containing protein"
     gene            complement(2043..2444)
                     /locus_tag="ISU39_RS27445"
                     /old_locus_tag="ISU39_27445"
     CDS             complement(2043..2444)
                     /locus_tag="ISU39_RS27445"
                     /old_locus_tag="ISU39_27445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_060628044.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVAEQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(2444..2635)
                     /locus_tag="ISU39_RS27450"
                     /old_locus_tag="ISU39_27450"
     CDS             complement(2444..2635)
                     /locus_tag="ISU39_RS27450"
                     /old_locus_tag="ISU39_27450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_060628048.1"
                     /translation="MMKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDALQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(3402..4076)
                     /locus_tag="ISU39_RS27455"
                     /old_locus_tag="ISU39_27455"
     CDS             complement(3402..4076)
                     /locus_tag="ISU39_RS27455"
                     /old_locus_tag="ISU39_27455"
                     /inference="COORDINATES: protein motif:HMM:NF014045.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="WP_001259273.1"
                     /translation="MRTIVYVDGFNFYHGLVKRSGYKWLDLYKLFEEQLLPIRARESQL
                     IQVKFFTAEIKAKFATRGELAHQAQQAYHRALLQIYGEKLQIIKGYYSERQECAMTFNE
                     GYPPSKTDRTTVWKLEEKQTDVRMALEMYRDAIRGEAEQLVLCTNDSDMIPPIEMIKAD
                     RPELKIGIVVPREQDTSRVISSLASLGDWSLPYVSYEALRLALLPDKVPTRRKPILKPN
                     HW"
                     /name="NYN domain-containing protein"
     gene            4424..4840
                     /locus_tag="ISU39_RS27460"
                     /old_locus_tag="ISU39_27460"
     CDS             4424..4840
                     /locus_tag="ISU39_RS27460"
                     /old_locus_tag="ISU39_27460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001283459.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_060628320.1"
                     /translation="MSDQKNNFNLQKQTLESKWGKEALSMGWSAIPTSLFFLQGALNMT
                     PTTFNVLLHLIIHWWKPYDWPHPSQESIAVRMGVSSRTVQRSLQELENYGLLTKIRTSK
                     DNPKYKGRNIYDMSLLVKSLNILTPDLNAKLNEK"
                     /name="helix-turn-helix domain-containing protein"
     Typing          2757..3160
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.103"
                     /coverage="99.0"
                     /evalue="4.61e-167"
ORIGIN
        1 caatactgct ttgcctaacg caggaataac ttcaaatgac gtcgccggat tcagcaaggt
       61 gacgatagcc ttgcgcacag gagaagttga tctagccaaa acagcgaaag aagcgaacgc
      121 tgatgctgca gctgtttcag caaatattat tgcgggattg aaagcatcac aaaagagcaa
      181 ggatgaaata aagtgattat cagcagggta aaaagccacc tgaatggtgg cttttttatg
      241 tccataacgg gctgtactca ctataacatc cgttgtgcga tgctaatgag aaaatgcaat
      301 gcaggcttca gtcgtaggcc ctgcatcgat ggaagatagt ggctacagcg gcatctgacc
      361 cggagacaac ctatccacag cgattcaatt agtgagctac gtaaagtccg tgaactttac
      421 cattattgta gtcaaaggaa tgctcaataa tcttgtagaa ctcatcatca ttgagctcaa
      481 acttcctgaa aattgagtac gatacaagat ccgcaagctg aatcaacctt gacgccttgg
      541 aatccaaaaa caaaggcact tcagagaagt tacgaagttt tccatatcca tatccagtat
      601 ctttaaacgt acgagcaaga gactgaatac ttttctctgt tgacgattta tcaaaaatgg
      661 ccacccctcg agatgttgct ccttggtaat gtaatcggct caaatacatg tcgaaacgag
      721 acgatatctg ataaaaagat tctgttatta cgtcctttcc acctaaggat cccttgggta
      781 caacacacgc aaatatacgg atatcccgat gcttttgagt caggagtgtt aggcaatctt
      841 tgatcgcttg tttcctgtca tcgaaaggaa aatttttcca gccatctcgc ccacctctca
      901 taggcgaacc atgcaattct ctttcatacg gatcatcagt attaaatctg gctgcgatag
      961 cattcatctc ttgctctatc caatgagtct gcttttcaaa cactgagata ccagaaagga
     1021 caaaatgatt aagtgtaggg tctgatggtg taccagactc atcaacgtat aagagatgca
     1081 tcgaagattc cttaaacgaa aaaggccgcg caaatgcgcg gccttttcat aaattaggca
     1141 agccagtgcg ataaaaatcg catacaccgc tatgggcagc gaactgactc agtgttgagc
     1201 ataacaggca aacgcatatt taccaaaata atttatacac atatcataat catgagcaat
     1261 taaataacat aaattcaatc ggatagttgc ttcatcgtca ctcttattta ccataacatc
     1321 cgttatcagc accgcctgag aggccctcag agcgtttctg acggaaaacc ggtaaaacag
     1381 gcaacaaacc acccgaaaac ccgccagaaa cgcacaggct ctgtttttac ggcatgcatg
     1441 agtatgcgca caagtgcata gcgcggaaat tgacaccatt cagccagggg aagtcctgtt
     1501 tccggcgttc ttctcctccg aaaacggtga acggggacgc aatttattgc gtggccgtga
     1561 agcgttgccg gcgcagccgg aaaaccggtt ttcagcacgt tcaggaatca ggttcgtcga
     1621 cggccggcaa tcacgttatg gcaagtcacc agacgactca ccacacgatt caccggcgat
     1681 tcgactcgtg acttgactct agagtcacta cggtcaaaaa aacgccaaag cgacgattcg
     1741 actctagagt caagtcgtca taagttactg atagtgtgga gtgagtcgtc gatgactcta
     1801 tgacgagtcg tcggcaagtc gtacacgaat cgccgacgac ttggattcac cttacagaaa
     1861 gtaatactgc gtaatttaat aacccacaaa taactgatat taatgagtta tcttcaaaat
     1921 tttaattttg cgtggggtgt gggtattttt agtggtgagg tgcgttcaga gatctgacga
     1981 tttttgggaa ggttcaggaa ctccccggga tggccggaga ggaaaactga agcatgacgg
     2041 ggtcaggatt ttttccagaa tttccaccat ggcgccgggg attcagttaa ttttgcctgg
     2101 tgattttcaa gaaggagcat ggcctgtttg aggctgtcaa tgtgcgaatc cttggacaaa
     2161 agtaaggtgt tcaggtgttc aatctcctgt ttcagatgac gaatcacctg ttcactctgg
     2221 tcagcagagg ctgtatcacg ctgttcagcg acctgtccag aatggtgttc acccttcggt
     2281 tgttcaaagg gaccaaagac acgtaaaagc tctgaagtat ctaccatttt tgcattgcgt
     2341 tcaccgctac aggtggacag gtcacctgct ttaattaacc tgtgcagtgt tgttctactc
     2401 ttacccgtca gtcgggcagc ctcactaata gaaactctgg ccatcagtta ccatcctgta
     2461 atgcatccag tcttgaggac agtgtacgga aaagatgctc cgcatcatcg tggagtttct
     2521 cacaaaggtc ggcctcgaca tcgagatcaa gctcattaag cttctccagc aggagcagag
     2581 actgattctg gatgaattta gccatgttca gcgctgtttt ctgttgtttc atcataagag
     2641 gcctcagagc gtcagtgctc agtgtaggga tgttctcttt tccgcttcct cgctcactca
     2701 gtcgctatgc tcctgccgtt cggctgcggc gagcggcagg agcatgcgtg taaaagctcg
     2761 agaaaaccga gcggtcgcgt gacggggaaa aggaaaggcc gcttagcggc cgtttttcca
     2821 taggctccgc ccccctgaca agcatcacag aagctgacgc tcaaatcagt ggtggcgaaa
     2881 cccgacagga ctataaagat atcaggcgtt tccccctgat ggctccctcg tgcgctctcc
     2941 tgttcctgcc attcggttta ccggtgtcat tccgctgtta tggccgcgtt tatctcattc
     3001 cacgcctgac actcagttcc gggtaggcag ttcgctccaa gctggactgt atgcacgaac
     3061 cccccgttca gcccgactac cacgttgtcc cggtaactat catcttgagt ccaacccgga
     3121 acagacacga aaaatcgcca gtggcggtag ccattagtaa gaggattcac ggagcggagt
     3181 agtagagtgt tctacagagt tcttgaagtg gaggcctgac tgcggctaca ctggaaggac
     3241 agttttggta cctgcgctcc gtgaaagcca gttaccttcg gaagaaagag ttggtagctc
     3301 ttgattccgg caaacgaacc accgttggta gcggtggttt ttttgtttgc agggcatgag
     3361 attacgacga gagtaaaagg atcacaagaa gatccggctg tttaccagtg atttggcttc
     3421 agtattggtt tccgtctagt gggaacctta tctggtaata gcgctaatct caaagcttcg
     3481 taggatacat atggcaggct ccaatcccct aaactagcca gactactaat aactcgacta
     3541 gtatcttgct cccttggtac tacgattcca attttcaatt caggtcgatc ggcttttatc
     3601 atttctattg gcggtatcat atccgaatcg ttagtacaga gaaccaactg ctctgcctca
     3661 ccacgaatcg catcgcgata catttctaaa gccattctaa cgtcagtctg cttttcttct
     3721 aacttccaga ccgttgttct atccgttttc gatggaggat acccctcatt gaaggtcatc
     3781 gcacattcct gacgttctga gtagtaccct ttgattattt gtagcttctc gccataaatc
     3841 tgcagtaatg ctcgatggta agcttgctga gcctggtgag ctaactcacc tcgggtagca
     3901 aatttagctt tgatctcagc agtgaagaac ttcacctgaa tcaactgtga ctctcttgct
     3961 cttatcggaa gtagttgttc ttcaaagagc ttataaaggt ccagccactt atatcccgaa
     4021 cgtttgacca atccatggta aaaattgaac ccatctacgt aaactattgt tctcatttta
     4081 tttcacgcat aaaaaaaccg cctctaaggg cggttttaac aacaaaaact aacgttagca
     4141 aacagtttaa gttgtagttc ctcagggtta aaactaaccg agagagcggt ttcaagctcc
     4201 tgaaggaaga cgcgtaactt aatcgctgcc cacctaaagg gaggtttaga gcctcaaggg
     4261 agccgcgtaa cttaatcgcg ctaccaagag gtgagtgtag attaagtata gttgaatata
     4321 atgatattat aagcgcgctg gtgtcgtact aattatatga attaatttac caacctgcta
     4381 agctgaagtc ttctaagaag acttcagctt agcaggttgg tatatgtcag atcaaaaaaa
     4441 taattttaac cttcaaaaac aaacacttga atctaaatgg ggaaaggaag cattaagcat
     4501 gggctggtca gctattccta catcactttt cttcttacag ggtgcgctca atatgacacc
     4561 cacaacattc aatgtcttac tccatctaat tatccactgg tggaaaccct acgattggcc
     4621 acatccctct caggagagca ttgcagttag aatgggtgtt tcatcaagaa cagtgcaacg
     4681 ctcactccaa gaacttgaaa actacggatt gcttacaaaa attcgtacaa gtaaggacaa
     4741 ccctaagtac aaaggaagaa acatttacga tatgtctctt ttggttaagt cactaaatat
     4801 tcttactcct gaccttaacg ccaaactgaa cgaaaaataa ccgcaaaata catttaaaat
     4861 caggccaccg tcgtagcagg tttaccattt atcaggtctg tatctcggac tccgccaaga
     4921 tgaacagggg attgccggca cactctgcac tcaccttaga tcaaaattta atcaccacga
     4981 aagatgatct aagatagtgc tttacaagca aaacatctta ataatatatt cattaaataa
     5041 aatgaatatt taatggaaag ccttaaatgc ctggaaaaaa gtgccccttc tgtaacaagc
     5101 tgaccctctt cggaaacagc tgtacttctt gcaatgctgt agtgagaaca ccaccaaacg
     5161 aaggccgggg cggaagaggt aagcaatgtc cattttgtaa gacaatgaca ctgttcaaag
     5221 atggtacgaa tggatctcta aaatgctcca tgtgtcagcg taagttttcc ccatcgtaag
     5281 ggggaaaatg tcacacccag taggaaagca cgtatcgaaa aagcaagaac acgaacttaa
     5341 ttactggcta aaaaagaggg ggttcaaaga gagtaaacat cactagtgtg gctgattggg
     5401 tgagcaaagc taggactagg aatgcctagc aatgagtatc tcgatgcatg ccgaattaga
     5461 taaatacttt caagataaca aagggttatg ggttgacgaa tttgagacaa aatgatctct
     5521 gttacatctg agataaattc cataacgtgg gatttatcca tttaaaatca aaacaatatg
     5581 taaaatccca catctaaatt atcacagaca agaggtttac atgaccgaga aactgaaagg
     5641 aacggctagt gttctgcatg aaaccaaaac ttatgaggaa ttggttgaga agcattcagt
     5701 agaagtcgct aacggcttgc tggcaaatgc gat
//
