LOCUS       NZ_CP063331             2097 bp    DNA     circular CON 14-DEC-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Albany strain R17.2117
            plasmid pR17.2117_2.1k, complete sequence.
ACCESSION   NZ_CP063331
VERSION     NZ_CP063331.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN10425333
            Assembly: GCF_015159575.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Albany
  ORGANISM  Salmonella enterica subsp. enterica serovar Albany
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Chiou,C.-S., Hong,Y.-P., Wang,Y.-W. and Chen,Y.-S.
  TITLE     Salmonella enterica subsp. enterica serovar Albany strain R17.2117
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Chiou,C.-S., Hong,Y.-P., Wang,Y.-W. and Chen,Y.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2020) Center for Diagnostics and Vaccine
            Development, Centers for Disease Control, Taiwan, No.20, Wenxin S.
            3rd Rd., Nantun Dist., Taichung City 408, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 08-SEP-2020
            Assembly Method                   :: unicycler v. v0.4.6
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/14/2023 04:16:16
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,684
            CDSs (total)                      :: 4,561
            Genes (coding)                    :: 4,456
            CDSs (with protein)               :: 4,456
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 17
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 40 of 105
            Pseudo Genes (incomplete)         :: 73 of 105
            Pseudo Genes (internal stop)      :: 22 of 105
            Pseudo Genes (multiple problems)  :: 27 of 105
            Pseudo Genes (short protein)      :: 1 of 105
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP063331.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Salmonella enterica subsp. enterica serovar
                     Albany"
                     /mol_type="genomic DNA"
                     /strain="R17.2117"
                     /serovar="Albany"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:211968"
                     /plasmid="pR17.2117_2.1k"
                     /geo_loc_name="Taiwan"
                     /collection_date="2017"
                     /collected_by="Centers for Disease Control, Taiwan"
                     /subtype="292"
     gene            890..1879
                     /locus_tag="ETD67_RS23325"
                     /old_locus_tag="ETD67_23325"
     CDS             890..1879
                     /locus_tag="ETD67_RS23325"
                     /old_locus_tag="ETD67_23325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_024136759.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          1882..1963
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          complement(1606..1797)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 cacgaaaacg gcaaaatgat ttactcgccg tttgtgtggg ttgttttgtg gggtgtcaat
       61 ggggttgtgg tcttttttgt gggttaaagt gtgggtgatt gtgtgggctg tgtgttttga
      121 gttgtgggtg attatgtggg tcattgtgtg ggctgtatgc acggcatttt tttgttctcc
      181 taaaacacag gcacgataag cggcgtacac aaaacggggc gtttcgctcc gtcgcttgtg
      241 ccaaagggga cacccctttg caaccctgtg cggttctacg aacctggtca ggactgcgcc
      301 ccgacacccc gccaacgcct cacggtacgc gaaaaaattc cgcgtaccgt tcaccgttcc
      361 ctgattcgtc aaacagaaaa tcgcgggggc ccgcgcctcc ggcgtgggtt ccgattttgt
      421 gattgacgaa ggcacgggaa aaacactggg gatggtggtt ggtgtcacgc agtgaggcca
      481 accacctgca agacggtttt ttttgttgtt cacaaaatcg gggtgaaagt ctgtggatga
      541 gatgggtgta agtgggtggg gttgggtggt tttgggttac tgaaaatccc gctcaaaatt
      601 caagcaaatc tcgcgcgcga tccttgtatt tatacttaag ggataactct aggattcaaa
      661 ttcgcctcca gcccttgtgc cgcaaggcct gaggggggat ttgtcggaaa atggttttgg
      721 agttattctg tcgggagtgg tcgcattaaa agcgaccccc gcaacgaggg caatcgttcg
      781 ggggtgtgac cacctgtagg aattcgaatt ggtgatacga ctaacacaac aggtgatatg
      841 gcaatgataa cacgtcagat gagccatcgc ccactatcgg gtggtgcgca tgaaaaaccc
      901 tgatctccag aacctcacgg actattcccc ctcagatgcg ccctgggacg ctcacagaag
      961 cgtttctgat gacgtgggag ggatttacct gcttgcagcc gaatatgagc gctacggggc
     1021 gcgtatggcc ctctgtggtg gtttactgcg tttcgggtgg tctaccctca aggaaaccgg
     1081 agaaacgcgt ctgaggctgc gtgaggcgca tttctgccgt gtccggcatt gtcctgtctg
     1141 ccagtggagg cgctccctga tgtggcaagc ccgtttctac cagtccctgc cgcgtatcgt
     1201 ggcggattat cccgatgccc gctggatgtt cctgactctg accgtgcgca actgtgcgat
     1261 cggggagctg ggcgagatgc tgaaccggat gaatgcagct tttcagcgca tgaaggttcg
     1321 caaggagttc cggcctgtgc agggctggat acgtaccacg gaagtcaccc gcgggagcga
     1381 cggcagcgca cacccgcact tccacaccct gatgatggtg ccgcctggca tgctaaatgg
     1441 gaaaagttac gtcaggcatg aacgctgggt tgaactctgg cgggagtgtc tgcgggtcga
     1501 ttatgacccg aatgttgatg tccgggcagt gaaacctcgt aagccgaagg gcggcgaatc
     1561 gctggcctgc gcgaccgccg aactggtgcg cggtgcggtg gccgaaaccc tgaaatattc
     1621 cacgaagccg gctgacatgg tggccgatcc tgaatggttc ctcgaactga cccgccagac
     1681 gcacaagcgc cgctttgtgg cgaccggcgg cgcactcaaa gacgtgctga aactcgatca
     1741 ggaaactgac gccgacatgg tgatcggtga tgatatttcc gagggcgacg atgacggttc
     1801 acgcatcgcg ttcgagtgga aaaccgaggt cagaaagtac cgtcgctcac cgacgaaaga
     1861 taaaactgaa tcaggctagc ggggtgtcgg ggtgcacccc tgaccagatg gcaattgtga
     1921 tagcgtcgcg tgtgacggta ttacaattac acatcctgtc ccgaaaattc ccgccgtttc
     1981 tcggtttttt gagcgtcgca gaccgcacga caaacgaacc taaggtgagt ttgtataagt
     2041 gcgcacttcg tgagattccc tgactgccag tttgtcgatt gcgcggaacg gctgcgg
//
