LOCUS       NZ_CP063007             2088 bp    DNA     linear   CON 16-MAY-2024
DEFINITION  Klebsiella pneumoniae strain CriePir154 plasmid unnamed4, complete
            sequence.
ACCESSION   NZ_CP063007
VERSION     NZ_CP063007.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN13153753
            Assembly: GCF_009661455.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2088)
  AUTHORS   Shelenkov,A., Mikhaylova,Y., Yanushevich,Y., Samoilov,A.,
            Petrova,L., Fomina,V., Gusarov,V., Zamyatin,M., Shagin,D. and
            Akimkin,V.
  TITLE     Molecular Typing, Characterization of Antimicrobial Resistance,
            Virulence Profiling and Analysis of Whole-Genome Sequence of
            Clinical Klebsiella pneumoniae Isolates
  JOURNAL   Antibiotics (Basel) 9 (5), 261 (2020)
   PUBMED   32429555
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2088)
  AUTHORS   Shelenkov,A., Mikhaylova,Y., Yanushevich,Y., Petrova,L., Fomina,V.,
            Zamyatin,M. and Shagin,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-SEP-2020) Department Of Molecular Diagnostics and
            Epidemiology, Central Research Institute of Epidemiology,
            Novogireevskaya str., 3a, Moscow 111123, Russia
REFERENCE   3  (bases 1 to 2088)
  AUTHORS   Shelenkov,A., Mikhaylova,Y., Yanushevich,Y., Samoilov,A.,
            Petrova,L., Fomina,V., Gusarov,V., Zamyatin,M. and Shagin,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-NOV-2019) Department Of Molecular Diagnostics and
            Epidemiology, Central Research Institute of Epidemiology,
            Novogireevskaya str., 3a, Moscow 111123, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8-beta
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 26x
            Sequencing Technology             :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009661455.2-RS_2024_05_16
            Annotation Date                   :: 05/16/2024 03:16:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,273
            CDSs (total)                      :: 5,148
            Genes (coding)                    :: 5,020
            CDSs (with protein)               :: 5,020
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 128
            CDSs (without protein)            :: 128
            Pseudo Genes (ambiguous residues) :: 0 of 128
            Pseudo Genes (frameshifted)       :: 69 of 128
            Pseudo Genes (incomplete)         :: 55 of 128
            Pseudo Genes (internal stop)      :: 13 of 128
            Pseudo Genes (multiple problems)  :: 9 of 128
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP063007.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2088
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="CriePir154"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed4"
                     /geo_loc_name="Russia: Moscow"
                     /lat_lon="55.76 N 37.62 E"
                     /collection_date="2017"
                     /collected_by="Pir Nat Surg Centre"
     gene            complement(786..1052)
                     /locus_tag="GJI94_RS26250"
                     /old_locus_tag="GJI94_026250"
     CDS             complement(786..1052)
                     /locus_tag="GJI94_RS26250"
                     /old_locus_tag="GJI94_026250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     gene            complement(1056..2021)
                     /locus_tag="GJI94_RS26255"
                     /old_locus_tag="GJI94_026255"
     CDS             complement(1056..2021)
                     /locus_tag="GJI94_RS26255"
                     /old_locus_tag="GJI94_026255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001287824.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETN
                     EDLVIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     Typing          complement(1397..1628)
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 gagccagtac atgtcaccag agtttgccgc tgaggtgaca cattcgaaat gttggggagt
       61 gttgacgcac tccccaacgc cgattaaaaa cgcctcaatt ctgctccatt ttctttgacc
      121 tgtcaaaacc cactcaaagc ctcgtcatta ctgggctaaa ccactatttc atatccgcca
      181 tttatccctt aagtataaat acaaggatca cgcgcgagaa ttgcgcaaaa aataaccaca
      241 attttaaccc ccaaaacaag cacccccgaa cggcttaccc caaccttttc cacacacccg
      301 atcaccaaaa cagggaataa aaacaaaacc ctgtcttaca ggtggatggc ctcacttcgt
      361 gaaaccatcc accccgcata agttttttaa tcggtggtgt cgtcaatcac taaatcggaa
      421 ccccaaaggg gacccccacg atttagcatt tgacgagatt aactctcgga gatggcatca
      481 tgcttttaac ggactttaaa aaacggtgaa cggatgcgga ttttaatccg tgtctgtgag
      541 gcgttgagca acgagcaaag cgaggcggta gaaagagagc cagcggcagg ctcaggacga
      601 taatccgggg aaaatgtacc actcgcagag tgttaacatt tgacatcgga ttgtctatcc
      661 tgcattggtg tcgagttggc aaggctgagg ataatgctga ggataatgca ggatagacag
      721 agcactagag attgcatgca atctcgtacc tatcacctca gcctgccgct ggctcttttc
      781 cagaactaag aatgcgttct taaaaatcca aacttgatac cgtttaaatc tattttcaca
      841 aaaagagttt ttaccctctc gtttgttttc tgaatatata aaattaattc atcctcaaaa
      901 ccttcgtgcg gatgaaaacc aaatgtgcca aaacttaatc catcaataag caaaataagg
      961 tttttaaacc tgtcaggaat caccgcttca cttcttaaaa aaaataaacc aatagtctta
     1021 tttccattca ggtattcaat attaatattc atacgttaat ccgatttatc cttctcaggg
     1081 gcgcgtttgt aacgccgttt acctgaatcc cagacaaacg ccgtccgctt cccgtcatca
     1141 gtgccatccc ctacatcgtc ggcaatgaca agatcctcat tggtttctcg atccaactgg
     1201 aggacgtttt ttagcgcccc accggtcgag ataaaacggc gcttgtgaag ctgccgcgtc
     1261 agctcaagaa accactcagg atcgtttgcc atatcttccg gtttaacgga gtatttcagc
     1321 gtttcagcaa ccgcgctttg cagttgctcg gcaacgttgg ccacaacctc acctgtctta
     1381 gtttttactg cccgaatatc gatattcggc tcatagttca cccgcaagca atcgcgccag
     1441 agttctaccc aacgttcgtg cttaacgtag ttcttccctt taaaccaaga aggttgcacc
     1501 atcagcagac agtgaaaatg cggatgtgcg ctgccatcct tacctcgcgt cacctccgta
     1561 gccctgatcc acccctgaac aggtgatagc tcctttcgct tttccattcg cttaaacgcc
     1621 gcattcattg ctgtaaggac tgttccaagt tcacctatct cgcagttcct gacagttaac
     1681 gtcagaaaca accatcggga agacgggtaa tccacaacga ttttcggtag agcctgataa
     1741 aaacgggctt gccacatgag ggttcttctc cactggcaga cagggcaatg acggacacgg
     1801 caaaattgcg cactacgaag ccgtaggcgc gtttctccgg tttccatgat ggtagaccaa
     1861 ccaaaacgta acaaaccgct acaggaggcc atacggagtg catagcgctc gaattcagca
     1921 gcagtctggt agataccccc gacagaatcg gtaagcgtgc gctgggtatc ccaaactgca
     1981 tcacgggggc tgtagtccga aaggaattta tcttctgaca ttaagcctgc tccgatctgg
     2041 gcaggctgtg atttgatgtg gtatattcat cacgtacctg tgcattgc
//
