LOCUS       NZ_CP062460             3125 bp    DNA     circular CON 28-MAY-2024
DEFINITION  Staphylococcus aureus strain NAS_OP_153 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP062460
VERSION     NZ_CP062460.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15567997
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3125)
  AUTHORS   Cella,E., Sutcliffe,C., Jubair,M., Weatherholtz,R.C., Reid,R.,
            Reid,A., Quay,D., Azarian,T.H. and Hammitt,L.
  TITLE     Carriage prevalence and genomic epidemiology of Staphylococcus
            aureus among Native Americans in the southwest US
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3125)
  AUTHORS   Cella,E., Sutcliffe,C., Jubair,M., Weatherholtz,R.C., Reid,R.,
            Reid,A., Quay,D., Azarian,T.H. and Hammitt,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUL-2020) Burnett School of Biomedical Sciences,
            University of central Florida, 4111 Libra Dr, Orlando, FL 32816, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                :: 2020
            Assembly Method              :: Uniclycler v. 0.4.8
            Genome Representation        :: Full
            Expected Final Version       :: Yes
            Genome Coverage              :: 50x
            Sequencing Technology        :: Illumina MiSeq; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_022699785.1-RS_2024_05_28
            Annotation Date              :: 05/28/2024 03:10:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 4
            CDSs (total)                 :: 4
            Genes (coding)               :: 4
            CDSs (with protein)          :: 4
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP062460.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3125
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="NAS_OP_153"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed2"
                     /collected_by="UCF"
     gene            complement(join(2941..3125,1..811))
                     /locus_tag="IF780_RS00005"
                     /old_locus_tag="IF780_13845"
     CDS             complement(join(2941..3125,1..811))
                     /locus_tag="IF780_RS00005"
                     /old_locus_tag="IF780_13845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_001199892.1"
                     /translation="MQYNTTRSITENQDNKTLKDMTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNILEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQKVI
                     EKVIKEKPKARWLFLTLSTKNAIDGDTLEQSLKHLTKAFDRLSRYKKVKQNLVGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWVNLWQRALQVDYRPVANVKAI
                     KPNRKGDKDIESAIKETSKYSVKSSDFLTDDDEKNQEIVSDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDVEDGNLINASDEDKTTDEEEKAHSITAIWNFEKQNYYLRH"
                     /name="protein rep"
     gene            1263..1844
                     /locus_tag="IF780_RS00010"
                     /old_locus_tag="IF780_13850"
     CDS             1263..1844
                     /locus_tag="IF780_RS00010"
                     /old_locus_tag="IF780_13850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000991705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000991705.1"
                     /translation="MNAIQNSISLRKILVVSLSILTILSMVLDFNFKEAQAQNKNNIAD
                     KNVETLNEKEIEKELKYIYGKIIILDKDGTAKDVNLENAKSRYGYVPEGFQKLKNDIEN
                     KKKTSSISPRAVGGNYKNSGDCFYSEVLNSYGELLTGNIITAVFEDVKAKNLKGVAKKL
                     AKIGIKGNLAGIAATMVSKDVQCNLKYGLL"
                     /name="hypothetical protein"
     gene            complement(2014..2136)
                     /locus_tag="IF780_RS00020"
     CDS             complement(2014..2136)
                     /locus_tag="IF780_RS00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000491229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000491229.1"
                     /translation="MFSHCFFIPIGVVAYFLFFYKDDAFDEMEEKYDYHEDNKK"
                     /name="hypothetical protein"
     gene            complement(2170..2358)
                     /locus_tag="IF780_RS00015"
                     /old_locus_tag="IF780_13855"
     CDS             complement(2170..2358)
                     /locus_tag="IF780_RS00015"
                     /old_locus_tag="IF780_13855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001030810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_242643495.1"
                     /translation="MNKNTVLDEGYVIETILNVFFLLGLIFISHLENLYILIPYVILMG
                     INAIYLVVKVMNFKKNN"
                     /name="hypothetical protein"
     Typing          complement(2707..2871)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.42e-81"
     Typing          complement(2..811)
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.877"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(2944..3120)
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.258"
                     /coverage="94.0"
                     /evalue="6.2e-68"
ORIGIN
        1 ttcgatacaa acctttttct aaatcactta caatttcttg atttttttca tcatcatcag
       61 ttaaaaaatc agatgattta accgaatatt ttgaggtctc tttgattgcc gattcaatgt
      121 ctttatcgcc ttttctattc ggtttgatcg ctttaacatt agcaacaggt cgatagtcaa
      181 cttgtaatgc tctttgccat aaattaaccc attcttcttg agttatataa ttctcttttt
      241 ttctaaaata tgcattttca acacataaca aaacatgcat gtgctgatta taactaccgt
      301 catttttatt aacggtaact tctgttgaac gcataaatcc aacaagattt tgtttaacct
      361 ttttatatct actcaaccta tcaaatgctt tagttagatg cttcaaactt tgttctaaag
      421 tatctccatc tatcgcattt tttgttgaaa gtgttaaaaa caaccaacgt gcttttggct
      481 tttccttaat tactttttca atcacttttt gagcttgata actatttttc atagcacgtc
      541 tccaattaca aaccggacat aattttgatt tacaaaacca tgtcttatgt aacttcaaat
      601 agccttcatc agttggctta aattctaaaa tattaccaca ttgttttaca ttaaaagcct
      661 ttttgatttt taaaatttct agtatatctg catagcttac attatctatt ttcttttctc
      721 tccatgggcg ttgtttccca cttttcgtca tatcttttaa cgttttatta tcttgatttt
      781 cggttatact tctagtagta ttatattgca tataaaaaga cccccagtat tatttaagat
      841 tcgacacctt aataatataa ctggggtttt ttattgtcaa attttccttt cacgcacaaa
      901 aacacgttta aacactgtaa tatcaacagt tacagctata tatataaaat cgagttattt
      961 ctatatagta tcaagacaag aagaaactcg ttcacactcg tttcaaaaaa caacctattc
     1021 cttcttcttt ttatgaccct ctaaacctaa ataaattaat gtgaaaacca atgaataaat
     1081 aaaactttct aaaaagtcaa aaggattatc aaataaaatc gaattaacaa aattaaaaat
     1141 taaaaataca gataataaaa taatcaaaaa gtaaaaaaac ttattcatat taaactcctt
     1201 tgtttttata tgttaatatt atattgaatt catttaaata acaaaacaag ggggcattta
     1261 caatgaatgc aattcaaaac agtatatcac taagaaagat tttagtagta tctttaagta
     1321 ttttaaccat actttcaatg gtcttggatt ttaatttcaa agaagctcaa gcccaaaaca
     1381 aaaataacat tgcagataaa aacgttgaaa ctttaaacga aaaagaaatt gaaaaagaac
     1441 taaaatacat atatggcaaa attattattt tagataaaga cggaacagct aaagatgtta
     1501 atctagaaaa tgccaaatct cgatatggat atgttcctga aggattccaa aaactaaaaa
     1561 acgacataga gaataaaaag aaaactagtt caatatcacc tagagcagtt ggtgggaact
     1621 acaaaaatag cggtgactgt ttctattctg aagttttaaa ctcatatgga gaacttttaa
     1681 ctggaaacat aatcacagca gtttttgaag atgttaaagc caaaaactta aagggcgtag
     1741 caaaaaaatt agctaaaatt gggataaaag gaaacctagc tggaatcgca gctactatgg
     1801 tttcgaagga tgtacaatgt aatcttaaat acgggttact ttagatacta tttattccaa
     1861 ttgctttatt gacgttgagc ctcggaaccc ttaacaatcc caaaacttgt cgaatggtcg
     1921 gcttaatagc tcacgctatg ccgacattcg tctgcaagtt tagttaaggg ttcttctcaa
     1981 catcaataaa ttttctcggc ataaatgcgt cgtctatttt ttattatctt catgataatc
     2041 atatttttct tccatctcgt caaaagcatc atctttatag aaaaacaaaa agtaagcaac
     2101 aacaccaata ggaataaaaa aacagtgtga aaacaagaag aaactcgttt caaaatcccc
     2161 tcaaatattc taattattct ttttgaaatt cataacctta acaaccaaat aaatagcatt
     2221 tattcccatc aaaataacat acggaattaa tatatataaa ttttccaaat gagatataaa
     2281 aattaatcca agtaaaaaga aaacatttaa aatagtttct ataacgtaac cttcatctaa
     2341 cactgtgttt ttattcaaaa taaacactcc ttttttaaaa aactttatca caagacttac
     2401 tcaaattata aataccttta ttttgagttt taagggggta ttttaaaggt ttagggggta
     2461 tcatataggt ttttaactta aaaatatata caagctctta aaacgcaaat atgagccaaa
     2521 taaatatatg gtaatttcac aaacaaaaat ttcagcaaaa ccagtgacta attttttaac
     2581 actgcccatt tacatgcaaa ttaaaaatta gcataaaatc ctttaaaact tccacatgtt
     2641 tttctaaatt cctgcagggc gttttttatc aaaaatcgag aatttttaat ttttctctaa
     2701 aaactccgta agagcataag gagaatttgc tatcattcaa aaatgatagg tctggcaaag
     2761 ccagaaattc caggggtttt aaggtatttt aaagtgatat catacaaagc tgtactgtct
     2821 tatttttgtg acacaatata ttgcgtttgt cttatttttg tgacactaca tacagcattt
     2881 gtcacaaaaa taagacagta cttttttata aaaaatcaac aaaaaagaca ttagtcaaca
     2941 ctaatgtctt aaataataat tttgcttttc gaaattccaa attgcggtaa ttgaatgtgc
     3001 tttttcttct tcgtctgttg ttttatcttc atcacttgca ttaatcaaat taccatcttc
     3061 gacatcgtct aagtttaaaa ttttatgttt ttgtttaagc aatccaccat aacttaacat
     3121 acgtt
//
