LOCUS       NZ_CP062227             3172 bp    DNA     circular CON 15-NOV-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Goldcoast strain
            R18.1074 plasmid p3.1k, complete sequence.
ACCESSION   NZ_CP062227
VERSION     NZ_CP062227.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN11546980
            Assembly: GCF_014858565.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Goldcoast
  ORGANISM  Salmonella enterica subsp. enterica serovar Goldcoast
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Chiou,C.-S., Hong,Y.-P., Wang,Y.-W. and Chen,Y.-S.
  TITLE     Multidrug resistant Salmonella enterica subsp. enterica serovar
            Goldcoast strain R18.1074 complete sequence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3172)
  AUTHORS   Chiou,C.-S., Hong,Y.-P., Wang,Y.-W. and Chen,Y.-S.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-SEP-2020) Center for Diagnostics and Vaccine
            Development, Centers for Disease Control, Taiwan, No.20, Wenxin S.
            3rd Rd., Nantun Dist., Taichung City 408, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 19-SEP-2019
            Assembly Method                   :: unicycler v. v0.4.6
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/15/2023 05:13:31
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,735
            CDSs (total)                      :: 4,620
            Genes (coding)                    :: 4,492
            CDSs (with protein)               :: 4,492
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 128
            CDSs (without protein)            :: 128
            Pseudo Genes (ambiguous residues) :: 0 of 128
            Pseudo Genes (frameshifted)       :: 45 of 128
            Pseudo Genes (incomplete)         :: 92 of 128
            Pseudo Genes (internal stop)      :: 31 of 128
            Pseudo Genes (multiple problems)  :: 36 of 128
            Pseudo Genes (short protein)      :: 1 of 128
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP062227.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Salmonella enterica subsp. enterica serovar
                     Goldcoast"
                     /mol_type="genomic DNA"
                     /strain="R18.1074"
                     /serovar="Goldcoast"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:260678"
                     /plasmid="p3.1k"
                     /geo_loc_name="Taiwan"
                     /collection_date="2018"
                     /collected_by="Centers of Disease Control, Taiwan"
                     /subtype="358"
     gene            complement(459..989)
                     /locus_tag="FC625_RS23510"
                     /old_locus_tag="FC625_23510"
     CDS             complement(459..989)
                     /locus_tag="FC625_RS23510"
                     /old_locus_tag="FC625_23510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_140018423.1"
                     /translation="MASTEEGLLTLLLSVEHLKNTAIEQQKAVADTLAVARETLRGYRD
                     ISDSVVKQVSDEVRKGVQKTDIAGLMGERMTQDFQRLEETVAKMRANAEALNKDIATIH
                     HNVVKEYNTLNKYSLKWFIGVTVSFLVMFSLLGWFTKTLIDRNYTATEVVYQKIVDIEK
                     KLDKPAIGKSRKN"
                     /name="hypothetical protein"
     gene            complement(1001..1954)
                     /locus_tag="FC625_RS23515"
                     /old_locus_tag="FC625_23515"
     CDS             complement(1001..1954)
                     /locus_tag="FC625_RS23515"
                     /old_locus_tag="FC625_23515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001360358.1"
                     /translation="MATYHLNVKFGGKGQAGNHADYIERKGEYEKRKDLEYSEHGNMPG
                     WARDNPSHFWQAADQFERANGSTYREIEIALPRELTPDQRIELVQDFVRQVAGERHAYS
                     FAIHNPKASIDGGEQPHAHIMMSQRINDGMERSPEQYFRRYNAKNPERGGAKKDSGNLT
                     PTQQKEQLRTLRASWSALQNEHLARHGHRVRVDHRSLEERGIKRTPERHFGFAASSRLD
                     HAQRREILQNRAQPLEHFLEKAHSVRHQFDAQVQQKELVKTLLQDVARERGHALTARIN
                     KTGEVEFERAPTRTRSNTRGHGMGIRDNSRGYDYER"
                     /name="MobA/MobL family protein"
     gene            2133..2528
                     /locus_tag="FC625_RS23520"
                     /old_locus_tag="FC625_23520"
     CDS             2133..2528
                     /locus_tag="FC625_RS23520"
                     /old_locus_tag="FC625_23520"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001222910.1"
                     /translation="MRISNIDWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNELQAQENARKQANQKRMEGKTQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELRYPKDNILQKLKAIRLDLETSPDHH"
                     /name="hypothetical protein"
     Typing          complement(1005..1954)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.685"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 attttttcgg gattctgggg aggctgtgcg gtcggtaatg cttgaagaat acagaaggtt
       61 catgcaaact gaatgaactg gtttccgttg tcgccgcaac agactccaca ggaacattga
      121 ggaggtcgaa aacctcaatg aacccgaaga agctcgccta acggcgggct tttttcgttc
      181 tacgctccct gacgaaagat cgcaagcaca ataacgcgat ttttcacgct tttacgctca
      241 aaacatcaaa aaaccatgct ttcccccacc cctacctcaa aaaacgcgtc agaatcgttt
      301 tcatgagcct gcataactat tcacgaaagc aatgcgcgat ctgtttcgag cgttcagaag
      361 ggcgaacggg tcaaaacagc aaactttctc atcagaaaac ggtgaacggg acgcggaatt
      421 ttttcgcgtc ccgtgaggcg ttggacaagc gaagcgcgtc agtttttccg gctcttccct
      481 attgctggtt tgtccagttt cttttcaata tcaacaattt tctgatacac gacctccgtc
      541 gcggtgtagt tcctgtcgat caacgttttg gtaaaccagc caagcaacga gaacatgacc
      601 agaaaactga ccgtaacacc gataaaccat ttcagactgt atttattgag cgtgttgtat
      661 tctttaacaa cattgtgatg aattgtcgca atgtccttgt taagcgcctc cgcgttggct
      721 ctcatctttg ccacagtctc ttcaagacgc tgaaaatcct gggtcatgcg ctcacccatc
      781 agccccgcaa tgtccgtttt ctgtacccct tttctgactt catcgctaac ctgttttaca
      841 acactgtcag aaatatcccg atacccccgc agtgtttccc ttgcgaccgc cagcgtgtct
      901 gcaaccgctt tctgttgttc tatcgcagtg tttttcaaat gctcaacgga caacaagagc
      961 gtgagcaacc cctcttctgt actcgccata cagtcccctt ttaacgttcg tagtcgtacc
     1021 cgcgtgagtt gtcacgaatg cccatgccgt gccctcgcgt gttactccgc gtccgcgttg
     1081 gcgcacgttc aaattcaact tcacctgttt tatttattct tgccgtaagc gcgtgccctc
     1141 gctcccgtgc gacgtcctgt aaaagcgttt taactaactc tttttgctga acttgtgcat
     1201 caaattgatg acgaaccgaa tgcgctttct ctagaaaatg ttcgagcggc tgcgctcggt
     1261 tttgcaggat ttcgcggcgc tgcgcatgat caagccgtga tgaggcggca aatccgaaat
     1321 gccgttctgg tgtgcgttta attccgcgtt cttccagtga gcgatggtca acgcgcaccc
     1381 tgtgaccatg acgcgctaaa tgctcgttct gtaacgctga ccagctcgcc cgtaacgtcc
     1441 gcaattgctc tttttgctga gtcggtgtca gattgcctga atcttttttt gcgcctcccc
     1501 gttcgggatt cttggcgtta taacgccgga aatactgttc cggcgaacgt tccataccat
     1561 cgttaatacg ctggctcatc atgatatgcg catgaggctg ttcccctccg tcaatgctcg
     1621 cttttggatt gtgaatggca aagctatagg cgtgccgttc tccagctacc tgacgcacaa
     1681 aatcctgcac cagttcaatg cgctgatccg gtgtcagttc acgcggcaag gcgatttcga
     1741 tctcccgata agtcgaacca ttcgcacgtt caaactgatc agccgcttgc cagaaatggg
     1801 agggattatc tcgcgcccag cctggcatat tcccgtgctc tgagtattcc agatcttttc
     1861 gtttctcgta ctcgcctttg cgttcgatgt aatcggcatg gtttccggcc tgtcccttgc
     1921 cgccaaattt tacattgagg tgataggttg ccacggtgtt agccctccgc aggagcgcac
     1981 atgtttctga gccaacggcg aagaaacata taagtgcgct tccttctaat tttacgaatt
     2041 agcacggaag ataccccctg cacccaccga ccgcaagcga tatactgcac aaccccaaca
     2101 caccgcaaaa aacaccaggg agcatcccaa acatgcgcat cagcaacatc gactggttga
     2161 agaaacgaat cggctttatc aggaagctcg gagaacagac cgcacgacag aggcagatca
     2221 ttgacctgct cgataacgaa gccggactaa cagaacagga gcgcaaacta ctccacgtcc
     2281 tggcaaccgc agaaaaaaac gagctacagg cacaggagaa cgcacgcaaa caggccaacc
     2341 aaaaacggat ggaggggaaa acacaacgac gggaacgcaa tcaccgcctg tttcttgcgg
     2401 cggggttact gatcgaggcc ggactagtgg acacaaaaac aggcgaactg agatacccaa
     2461 aagacaatat attacagaaa cttaaggcaa tcaggctcga tcttgaaaca agcccagatc
     2521 atcattaatt ccgctgcgtg gtggtgcgtt tgcctgccgg tgttcaatgt tttcgatttc
     2581 gcgacgcgct acgcgcggat ctggcatagg tgcgtacgtg ctcaatgtgg tttccggttc
     2641 acttccgctt cctcgcccac tcgctcacta cgttcggtcg ctggggctgc ggcgagcggt
     2701 gggatcactc tcacatgatg cagatccttt tttttttttg ctctggagtt atcagttgtt
     2761 gcggtgctca tgggatcgtg cgatatgctg gatggtggaa ggtcggaggg aacggcaaca
     2821 actcacccct cccagtgaag ggacgggtag tttgccgctc tcgatatgcc ggacggagcc
     2881 aaggccatcg atcacggggc gcgtcggtgg aagaacccgc gcctgcgtga cgtatgcgtc
     2941 ttcgccgcac catctcaccc gtcacgccac cacataccgg gaactgccgc caaggtctaa
     3001 ctcaaccaat ctagccgcgc tacatacggt ttttgtggca actcatcagg tgtccgctgt
     3061 cgatgaaact ctctgcgccg gtagcggaac tctcacgcgt gcggttgccg tcgtcacagc
     3121 tcccccaacc gcaaacggtc tttgcaaaca cgcaatcatc tgcaaaaaca gg
//
