LOCUS       NZ_CP062144             2495 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella quasipneumoniae strain 203 19001 plasmid pF, complete
            sequence.
ACCESSION   NZ_CP062144
VERSION     NZ_CP062144.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15642698
            Assembly: GCF_014843255.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Zhang,H., Wen,H., Guo,Y. and Wang,G.
  TITLE     Complete Genome Sequence of Klebsiella quasipneumoniae sp. 203 19001
            Isolate from activated sludge in Xuzhou, China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Zhang,H., Wen,H., Guo,Y. and Wang,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-SEP-2020) School of Life Science, Jiangsu Normal
            University, Tongshan New District, Xuzhou, Jiangsu 221116, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 27-DEC-2019
            Assembly Method :: SPAdes v. 3.14.1; canu v. 2019.12.27
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Illumina HiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 01:24:37
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,417
            CDSs (total)                      :: 5,295
            Genes (coding)                    :: 5,118
            CDSs (with protein)               :: 5,118
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 177
            CDSs (without protein)            :: 177
            Pseudo Genes (ambiguous residues) :: 0 of 177
            Pseudo Genes (frameshifted)       :: 64 of 177
            Pseudo Genes (incomplete)         :: 112 of 177
            Pseudo Genes (internal stop)      :: 33 of 177
            Pseudo Genes (multiple problems)  :: 27 of 177
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP062144.1.
            Bacteria and source DNA available from School of Life Science,
            Jiangsu Normal University.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Klebsiella quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="203 19001"
                     /isolation_source="waste water and activated sludge"
                     /db_xref="taxon:1463165"
                     /plasmid="pF"
                     /geo_loc_name="China:Jiangsu"
                     /collection_date="2018-07-01"
     gene            179..406
                     /locus_tag="IG177_RS26940"
                     /old_locus_tag="IG177_26940"
     CDS             179..406
                     /locus_tag="IG177_RS26940"
                     /old_locus_tag="IG177_26940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            772..957
                     /locus_tag="IG177_RS26945"
                     /old_locus_tag="IG177_26945"
     CDS             772..957
                     /locus_tag="IG177_RS26945"
                     /old_locus_tag="IG177_26945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1248..1466)
                     /locus_tag="IG177_RS26950"
                     /old_locus_tag="IG177_26950"
     CDS             complement(1248..1466)
                     /locus_tag="IG177_RS26950"
                     /old_locus_tag="IG177_26950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_198129632.1"
                     /translation="MFGFSSGALMTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQ
                     ILSETEPAVRTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     Typing          complement(1005..1092)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          1731..2259
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 atgtatcggc cggattacat ctcatataag cctcctcccc gcctgacacc acactttgac
       61 catagcacct cgcgcctaac tcgatataca gcccaccatc aagcctcttt tcacataaaa
      121 aatgacctat agttagatgg ttagtgacca aaactgatat ggataaaagg agctggcttt
      181 gaaaaagatt tttgtttcag tgttcgcagc ggcagttgcg ctttcagccc tcaccggctg
      241 cacgcgcaca agctatgcca tacacaccaa tgacggtcgc actattgtca gcgacggcaa
      301 acctaaagaa tcagactcag gcctgcttgg ctatacagac gcgaatggtg tcaaacagca
      361 gatcaataaa accgacgtta aagaagtctc cgaaattccg cactgagcat cttctccgaa
      421 aaaggccgct aatgtggcct ttttctttac ctgtggttct ccgccaaaat cccagcaaat
      481 tgcatcacca aagctaaaag ctttcagggt tgtctaaaaa gcacaagaca taagaggaag
      541 tgcggtattt tataatcaag cccccaagaa tttaccataa catccgttgc ccgcaccgcc
      601 tgagacgcgt tcagcgcgtt cctgacgaaa ccatgacaaa aaccacaaca aaccaccccg
      661 gaacccgtca gaaacgcgcc tgttaaattt taacggcatg catgactatg caccagaatg
      721 acgccatgct cttttcacgc aaaaatcatc accagacggg gaaaatcacc agtgaccaga
      781 caggaatccg ccgccctcaa tatggccaaa tttatccgcg cacagacact tctcctcctt
      841 gagcggctcg agcagatgga tctggatgag gctgccggct gctgtgagca cctgcacgat
      901 caggccgaag cgctttacgc catgctgaac gcacagatag gcgaggaaaa tgcgtgaaaa
      961 tcggtgaacg ggtgcgcaat tcagtgcgcg gccgtgaggc gatggcgggg tgtcggggcg
     1021 cagccctgac cagggtattt gtgatgccgg cgcgtgcgcg gtattacaaa tgcacatcct
     1081 gtcccggaac ggacaccggg aaacagcaaa aaaaaccggg cggcacgccc ggaactcaat
     1141 caagttagat tagattactc tcactcgtcc ataacagcat catggaacga cgaccaccgt
     1201 ccgtgacggc cgcctcgttt aagtatggac agaaatacag aaaatgctca ggacgaaatg
     1261 taatgaatgc gaacggattc aagaaattcg agcatgacag tccttacggc cggttcggtt
     1321 tcagacaaaa tctgccggta tgcatccagc atcatggctc cggcatcccc tccggcacgc
     1381 cgtagccaga ccgaaacaac ggacacaagc aggtgtcgct catcatcact aagagtcatc
     1441 agggctccgg aagaaaaacc aaacatggct tacctactgt taacggcaac gcagaagaaa
     1501 ggtttacagg gtagcgggca gggatgaaaa aaaaaaaatt gcagtcaggc cggaacggct
     1561 gctgaaccgg tacaggcggg ttccgggcgc agcgccggac cagtcacgga gcactagcgg
     1621 agtgtatact ggcttaagat gtagcatggc agtaacacat agcattaatg ccacataaga
     1681 caggcgcaga aagtgaaaga aaacgcgtca ggagaaaatg tgatacagaa tatattccgc
     1741 ttcctcgctc actgactcgc tccgctcggt cgttcggctg cggcgagcgg gacgggctta
     1801 cggatggatc agaaatttcc tgggggatgc caggaagata cttaacgaag aaagcataag
     1861 gccgcgccaa agccgttttt ccataggctc cgcccccctg acaagcatca cagaatctga
     1921 cgctcaaatc agtggtggcg aaacccgatg cggcttaaag ataccaggcg tttccccctg
     1981 gtggctccct cgtgctcccc cgcattcctg cctttcggtt taccggtgtc actccgctgt
     2041 tatggccgcg gtttctcatt ccacgcctga cactcagttc cgggaaggca gttcgctcca
     2101 ggatggactg tatgcacgaa ccccccgttc agtccgaccg ctgcgcctta tccggtaact
     2161 atcaacttga gtccaacccg gaaagacacg actaatcgcc attggcaacg gccattggca
     2221 aacaggatgt gcgagagatg tctcaagagt tcttgaagtg gcggccttag tgaggctaca
     2281 ctgaaaggac aaatttggtg acatgtctcg cacaagactg ttaccacggt taggggatct
     2341 gccaggatta cctaaccttc gaaaaaccac ctgccagggt ggttttttcg tttacagggc
     2401 aagagattac gcgcggaaaa aaaggatctc aagaagatcc tttataaatt agacatccaa
     2461 cctcacaaag aggaatactt aaatcatctt ggtat
//
