LOCUS       NZ_CP061639             3857 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Acinetobacter seifertii strain AS41 plasmid pAS41-5, complete
            sequence.
ACCESSION   NZ_CP061639
VERSION     NZ_CP061639.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16092225
            Assembly: GCF_014721575.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter seifertii
  ORGANISM  Acinetobacter seifertii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 3857)
  AUTHORS   Li,L.-H., Yang,Y.-S., Sun,J.-R., Huang,T.-W., Huang,W.-C.,
            Wang,Y.-C., Kuo,T.-H., Kuo,S.-C. and Chen,T.-L.
  TITLE     Clinical and molecular characterization of Acinetobacter seifertii
            in Taiwan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3857)
  AUTHORS   Chen,F.-J. and Lee,Y.-T.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-SEP-2020) Department of Emergency Medicine, Taipei
            Veterans General Hospital, No.201, Section 2, Shipai Road, Taipei
            112, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: CCBGpipe v. 1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 80x
            Sequencing Technology             :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 01:22:37
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,292
            CDSs (total)                      :: 4,196
            Genes (coding)                    :: 4,043
            CDSs (with protein)               :: 4,043
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 153
            CDSs (without protein)            :: 153
            Pseudo Genes (ambiguous residues) :: 0 of 153
            Pseudo Genes (frameshifted)       :: 78 of 153
            Pseudo Genes (incomplete)         :: 73 of 153
            Pseudo Genes (internal stop)      :: 22 of 153
            Pseudo Genes (multiple problems)  :: 16 of 153
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP061639.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3857
                     /organism="Acinetobacter seifertii"
                     /mol_type="genomic DNA"
                     /strain="AS41"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1530123"
                     /plasmid="pAS41-5"
                     /geo_loc_name="Taiwan"
                     /collection_date="2010/2017"
                     /collected_by="TVGH"
     gene            join(3838..3857,1..427)
                     /locus_tag="IC778_RS21330"
                     /old_locus_tag="IC778_21315"
     CDS             join(3838..3857,1..427)
                     /locus_tag="IC778_RS21330"
                     /old_locus_tag="IC778_21315"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_308401008.1"
                     /translation="MKRKDTWRPLCYADVFHDLVQGQAPETPKSKGKSMTAIKRNKVYK
                     VRFSDAEVQKIKDANILNIAKYLRDTSLAQIDATQGNAKKKNQENHYTKLDRDFLLELS
                     RIGGNINQIAKAINTDIASSRPLDAARLLHLLIGIDQTLKELKK"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            424..2325
                     /locus_tag="IC778_RS21335"
                     /old_locus_tag="IC778_21320"
     CDS             424..2325
                     /locus_tag="IC778_RS21335"
                     /old_locus_tag="IC778_21320"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_144624569.1"
                     /translation="MIVQFFRYGNGLSKGPLDYLLGKDRDRDYAKVLQGDVSEVSGLID
                     TSPYAKKYTSGCLSFYEHDLSDQDKQKIMQDFEQALFPGMDQSQYRVLWIEHQDKLNEE
                     TGERRLELNFLIPNVEILTGQRLQPYYDKADRPRIDLFKKITNYEYQLHDADDPLYRQA
                     VTTAKNLPKTVNEIKETLDIEATRAVEGGLITDRQSMKKWLLDLGLEVTRETKKSLSIK
                     NPNDDEKARPIRLTGAIYEQDFRLTETSQQLTIAASERYRREAKQRNQSDIQRYAEYSA
                     KRSTELEQQYRQHQNVYTAETERSNERDIAADRPDYSSNQEAAATRHDSPIARTTTADQ
                     TATSELAAVEQLEPRNSPSSQIKENPYYIEYSLDFTGMYNAYQQYLSGVRQQEQIQRHH
                     RDGEQSPVVKKPRGEPEYSEVWDREKMELVRPDRPESAAVQQQHANSAGNQLNESRSTV
                     IADYRAATAAAQRATEAARASLAAHSGTEQNHRRIRELQQQTSEALQPVERERKRADQY
                     HQETTESEAIRGFIARLGEQLKTAITEPFRAISDWVKSKERDQRTIANDDLYRNREADS
                     TIERTASKETRLSATVSRKIRGFDQTNIFKALDELDRRRELQLEQQRKNDRSYSPRF"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            2611..3573
                     /locus_tag="IC778_RS21345"
                     /old_locus_tag="IC778_21330"
     CDS             2611..3573
                     /locus_tag="IC778_RS21345"
                     /old_locus_tag="IC778_21330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004977197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071212525.1"
                     /translation="MLNKTQFSDDFYEKLPKKPYCSDDLGRGVIIRPKRTAIQKPYIQH
                     NPPCLVSSLVFDIDRQDAYFAWSDANLPTPTWIAKNRQNGHAHIGYMLLAPVCTTHRAK
                     QNVIQYLAKIEQAYSLALGADRGYTGLITKNPCHGTWENHTFGVQPYDLNYLADFVELQ
                     ELKTDLKEVSGLGRNCMMFDTVRFWAYEAIRAFISGSPDSWYAEVLKVAINANGAFLEP
                     LPYSEVKATAKSIARWVWRNHTEAHAKFIERQTVKGRKGGLSSDSSHGGKARSQQYSDM
                     RQEALKLHIQGIKQKDIALQLNVSDRTIRTWIKKRKVQA"
                     /name="replication initiation protein"
     Typing          425..2319
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.575"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 gagacccctc tgctacgcag atgtgttcca tgaccttgtt caggggcaag cccccgaaac
       61 ccccaaaagc aaaggcaaaa gcatgacagc gatcaaacgt aataaggttt acaaagtccg
      121 attttctgat gcagaggtac agaaaatcaa agatgccaat atcctaaata ttgccaaata
      181 tctaagggat acttcgcttg cccaaattga tgcaacccaa ggcaacgcca aaaaaaagaa
      241 tcaggaaaac cactacacaa aattagaccg tgactttttg cttgagctat cccgaattgg
      301 gggcaacatc aatcagattg caaaggcaat aaatactgat attgcaagca gtcgtcccct
      361 tgatgctgca aggcttttgc acctgttaat agggattgat cagaccttaa aggaattgaa
      421 aaaatgattg ttcaattctt tagatatggg aacggtttaa gtaaaggtcc actggattat
      481 ttacttggta aagaccgtga tcgagattat gcaaaagtcc tacagggcga tgtttccgaa
      541 gtatcaggat taattgatac gtcaccttat gcaaaaaaat atacatccgg ctgcctaagt
      601 ttttatgagc atgatttatc tgaccaggat aaacaaaaaa tcatgcagga ttttgagcaa
      661 gccttattcc ctggcatgga tcagagccag taccgtgtct tgtggattga gcatcaagac
      721 aaattaaacg aagaaacagg ggagcgaaga ttagagctta acttcctaat ccctaatgtt
      781 gaaatcctta cagggcaacg tttacagcct tattatgata aagctgatcg tcctcgtatt
      841 gatctgttta agaagattac aaactatgaa tatcaactgc atgatgcaga tgaccccctc
      901 tatcgccaag ccgttacaac ggcaaaaaac ttgcctaaaa ctgttaatga aatcaaggaa
      961 acgcttgata ttgaagcaac gagagccgtt gaaggtggac taattacaga tcggcagagc
     1021 atgaaaaaat ggctattgga tcttggtctt gaagtcacca gagaaaccaa gaaaagccta
     1081 tccattaaaa atccgaatga tgacgaaaaa gcccgcccga taaggcttac aggtgcaatc
     1141 tatgagcaag attttagact tacagaaacg agccaacaac ttactatcgc agcatcagaa
     1201 cgatatagac gagaagctaa acagcgaaat cagtcagata ttcaaagata tgcggaatac
     1261 agtgcaaagc gaagcacaga gcttgagcag cagtatagac agcaccaaaa cgtatataca
     1321 gcagaaacag agcgaagcaa cgaacgagat attgcagcag atcgaccaga ctacagctca
     1381 aaccaagaag cagcagcaac aaggcatgac agccctattg caagaacaac aacagcagat
     1441 caaacagcta caagcgaact tgcagcagtt gaacagcttg agccaagaaa cagcccaagc
     1501 agccaaatta aagaaaaccc ttattacatc gaatatagcc ttgatttcac tggcatgtat
     1561 aacgcttatc agcagtattt gtctggggta cgtcagcaag agcaaataca gcgacatcac
     1621 agagatggag aacaaagtcc agtggttaaa aagccaaggg gcgagcctga atattcagaa
     1681 gtgtgggaca gagaaaaaat ggaactggtg cgtccagatc gacccgaaag cgcagcagta
     1741 cagcaacaac atgcgaatag tgcaggaaac caattaaatg aatctcgaag cacagttatt
     1801 gcagattatc gagcagcaac agcagcagct caaagagcaa cagaagcagc aagagcaagc
     1861 cttgcagctc attcaggcac agaacagaac catagacgaa ttagagaact acaacagcaa
     1921 actagtgaag cactgcaacc agttgaacga gaaagaaaac gagctgatca atatcatcaa
     1981 gaaactacag aatccgaagc tatcagagga tttattgcaa ggcttggaga gcagcttaaa
     2041 acagcgatta cagagccatt tagagcaatt agtgactggg ttaaatctaa agaacgagat
     2101 caacgaacta ttgccaacga tgatctatac agaaatcgag aagcagacag caccattgaa
     2161 cgaacagctt caaaggaaac tagactcagt gcaacagtat cacgaaaaat tcgagggttt
     2221 gatcaaacaa atatcttcaa ggctttagat gaactggaca gacgtagaga gttgcaactg
     2281 gagcaacaac gtaaaaatga caggagttat tcacctagat tttgatactt ttttttctgc
     2341 ggagcattgc ccttgcaatg ctgtcctcga aaaaaagcat cttcaaaggt cacatatttg
     2401 cgacattttg tcgcaatatt ttgttttgaa aatcagtcat ttgacagcaa ttcaaaaagg
     2461 tgtaatattt tcatcaggcg aaaaaaaagc aggtttggcg acccgctttt ttctctttgt
     2521 taaacaaacg cttaaagcat ccgtaaaact caaattcgat acttgtattt tactgatgtt
     2581 ttgagccaat gcaacacttg gacgtgtttc atgctcaata aaacgcaatt ttcagacgat
     2641 ttttacgaaa aactcccaaa aaaaccgtat tgctcggatg atttagggcg tggggtgatt
     2701 attcgcccaa aacgtaccgc aatccagaag ccatacattc agcataatcc cccttgtctt
     2761 gttagctcgt tggtgttcga tatagaccgc caagacgctt attttgcgtg gtctgacgca
     2821 aatttaccga ccccaacatg gatagccaaa aatcgccaaa atggacatgc acatattggc
     2881 tatatgcttt tagctccagt gtgtaccacg catcgagcaa agcagaatgt catacagtac
     2941 cttgccaaga ttgagcaggc gtatagcttg gcgttaggtg cagatcgtgg ctatacgggg
     3001 ttaatcacta aaaatccatg tcacggaaca tgggaaaatc atacctttgg cgttcaacca
     3061 tacgacctaa attatttagc cgattttgta gagcttcagg aactaaaaac cgacttaaaa
     3121 gaagtttcag ggcttgggcg taactgtatg atgttcgata ccgttcgttt ttgggcgtat
     3181 gaagcgatta gagcgtttat ttcggggtcg cctgatagtt ggtatgcgga agtgctaaaa
     3241 gtcgctataa acgcaaatgg tgcgttttta gagccattgc catattcaga ggtaaaggca
     3301 accgctaagt ctattgctcg ttgggtatgg cgcaatcaca cagaagcaca tgccaaattt
     3361 atcgagcgtc agactgtcaa agggcgtaaa ggcggtctaa gcagtgattc cagtcatggc
     3421 ggtaaggcta ggtcacagca atacagtgat atgcgtcagg aagccttaaa actgcatata
     3481 cagggcataa agcagaaaga tatagcccta caattgaatg tttcggatag aacaatcaga
     3541 acgtggataa aaaagcggaa agtgcaagcc taaatcagat atcagccccc tagggtgctt
     3601 ttttcccatt tcatttttaa aaattattat taaagggaat gagcaacggc tgtgggcaaa
     3661 gtaaaaccct gtgatctaaa cctgtgtgca actcaacgta taacggcttt atcgttatgc
     3721 ggagttgtgc atagtgttta ggcacagatc aggttttacg gtcgcttgcg attgtccata
     3781 gtcttgctat gacctgctta atcttaattg aattacgtct aggggtctgc tatcgtaatg
     3841 aaacgcaagg atacatg
//
