LOCUS       NZ_CP061625             3857 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Acinetobacter seifertii strain AS49 plasmid pAS49-5, complete
            sequence.
ACCESSION   NZ_CP061625
VERSION     NZ_CP061625.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16092229
            Assembly: GCF_014721075.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter seifertii
  ORGANISM  Acinetobacter seifertii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 3857)
  AUTHORS   Li,L.-H., Yang,Y.-S., Sun,J.-R., Huang,T.-W., Huang,W.-C.,
            Wang,Y.-C., Kuo,T.-H., Kuo,S.-C. and Chen,T.-L.
  TITLE     Clinical and molecular characterization of Acinetobacter seifertii
            in Taiwan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3857)
  AUTHORS   Chen,F.-J. and Lee,Y.-T.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-SEP-2020) Department of Emergency Medicine, Taipei
            Veterans General Hospital, No.201, Section 2, Shipai Road, Taipei
            112, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method                   :: CCBGpipe v. 1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 80x
            Sequencing Technology             :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 01:41:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,407
            CDSs (total)                      :: 4,310
            Genes (coding)                    :: 4,156
            CDSs (with protein)               :: 4,156
            Genes (RNA)                       :: 97
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 154
            CDSs (without protein)            :: 154
            Pseudo Genes (ambiguous residues) :: 0 of 154
            Pseudo Genes (frameshifted)       :: 82 of 154
            Pseudo Genes (incomplete)         :: 69 of 154
            Pseudo Genes (internal stop)      :: 26 of 154
            Pseudo Genes (multiple problems)  :: 19 of 154
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP061625.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3857
                     /organism="Acinetobacter seifertii"
                     /mol_type="genomic DNA"
                     /strain="AS49"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1530123"
                     /plasmid="pAS49-5"
                     /geo_loc_name="Taiwan"
                     /collection_date="2010/2017"
                     /collected_by="TVGH"
     gene            join(3311..3857,1..416)
                     /locus_tag="IC782_RS21905"
                     /old_locus_tag="IC782_21890"
     CDS             join(3311..3857,1..416)
                     /locus_tag="IC782_RS21905"
                     /old_locus_tag="IC782_21890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004977197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071212525.1"
                     /translation="MLNKTQFSDDFYEKLPKKPYCSDDLGRGVIIRPKRTAIQKPYIQH
                     NPPCLVSSLVFDIDRQDAYFAWSDANLPTPTWIAKNRQNGHAHIGYMLLAPVCTTHRAK
                     QNVIQYLAKIEQAYSLALGADRGYTGLITKNPCHGTWENHTFGVQPYDLNYLADFVELQ
                     ELKTDLKEVSGLGRNCMMFDTVRFWAYEAIRAFISGSPDSWYAEVLKVAINANGAFLEP
                     LPYSEVKATAKSIARWVWRNHTEAHAKFIERQTVKGRKGGLSSDSSHGGKARSQQYSDM
                     RQEALKLHIQGIKQKDIALQLNVSDRTIRTWIKKRKVQA"
                     /name="replication initiation protein"
     gene            681..1127
                     /locus_tag="IC782_RS21910"
                     /old_locus_tag="IC782_21895"
     CDS             681..1127
                     /locus_tag="IC782_RS21910"
                     /old_locus_tag="IC782_21895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017482451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_308401008.1"
                     /translation="MKRKDTWRPLCYADVFHDLVQGQAPETPKSKGKSMTAIKRNKVYK
                     VRFSDAEVQKIKDANILNIAKYLRDTSLAQIDATQGNAKKKNQENHYTKLDRDFLLELS
                     RIGGNINQIAKAINTDIASSRPLDAARLLHLLIGIDQTLKELKK"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1124..3025
                     /locus_tag="IC782_RS21915"
                     /old_locus_tag="IC782_21900"
     CDS             1124..3025
                     /locus_tag="IC782_RS21915"
                     /old_locus_tag="IC782_21900"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_144624569.1"
                     /translation="MIVQFFRYGNGLSKGPLDYLLGKDRDRDYAKVLQGDVSEVSGLID
                     TSPYAKKYTSGCLSFYEHDLSDQDKQKIMQDFEQALFPGMDQSQYRVLWIEHQDKLNEE
                     TGERRLELNFLIPNVEILTGQRLQPYYDKADRPRIDLFKKITNYEYQLHDADDPLYRQA
                     VTTAKNLPKTVNEIKETLDIEATRAVEGGLITDRQSMKKWLLDLGLEVTRETKKSLSIK
                     NPNDDEKARPIRLTGAIYEQDFRLTETSQQLTIAASERYRREAKQRNQSDIQRYAEYSA
                     KRSTELEQQYRQHQNVYTAETERSNERDIAADRPDYSSNQEAAATRHDSPIARTTTADQ
                     TATSELAAVEQLEPRNSPSSQIKENPYYIEYSLDFTGMYNAYQQYLSGVRQQEQIQRHH
                     RDGEQSPVVKKPRGEPEYSEVWDREKMELVRPDRPESAAVQQQHANSAGNQLNESRSTV
                     IADYRAATAAAQRATEAARASLAAHSGTEQNHRRIRELQQQTSEALQPVERERKRADQY
                     HQETTESEAIRGFIARLGEQLKTAITEPFRAISDWVKSKERDQRTIANDDLYRNREADS
                     TIERTASKETRLSATVSRKIRGFDQTNIFKALDELDRRRELQLEQQRKNDRSYSPRF"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            2997..3284
                     /locus_tag="IC782_RS21920"
                     /old_locus_tag="IC782_21905"
     CDS             2997..3284
                     /locus_tag="IC782_RS21920"
                     /old_locus_tag="IC782_21905"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_190977978.1"
                     /translation="MTGVIHLDFDTFFSAEHCPCNAVLEKKHLQRSHICDILSQYFVLK
                     ISHLTAIQKGVIFSSGEKKAGLATRFFLFVKQTLKASVKLKFDTCILLMF"
                     /name="hypothetical protein"
     Typing          1125..3019
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.575"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 ataccgttcg tttttgggcg tatgaagcga ttagagcgtt tatttcgggg tcgcctgata
       61 gttggtatgc ggaagtgcta aaagtcgcta taaacgcaaa tggtgcgttt ttagagccat
      121 tgccatattc agaggtaaag gcaaccgcta agtctattgc tcgttgggta tggcgcaatc
      181 acacagaagc acatgccaaa tttatcgagc gtcagactgt caaagggcgt aaaggcggtc
      241 taagcagtga ttccagtcat ggcggtaagg ctaggtcaca gcaatacagt gatatgcgtc
      301 aggaagcctt aaaactgcat atacagggca taaagcagaa agatatagcc ctacaattga
      361 atgtttcgga tagaacaatc agaacgtgga taaaaaagcg gaaagtgcaa gcctaaatca
      421 gatatcagcc ccctagggtg cttttttccc atttcatttt taaaaattat tattaaaggg
      481 aatgagcaac ggctgtgggc aaagtaaaac cctgtgatct aaacctgtgt gcaactcaac
      541 gtataacggc tttatcgtta tgcggagttg tgcatagtgt ttaggcacag atcaggtttt
      601 acggtcgctt gcgattgtcc atagtcttgc tatgacctgc ttaatcttaa ttgaattacg
      661 tctaggggtc tgctatcgta atgaaacgca aggatacatg gagacccctc tgctacgcag
      721 atgtgttcca tgaccttgtt caggggcaag cccccgaaac ccccaaaagc aaaggcaaaa
      781 gcatgacagc gatcaaacgt aataaggttt acaaagtccg attttctgat gcagaggtac
      841 agaaaatcaa agatgccaat atcctaaata ttgccaaata tctaagggat acttcgcttg
      901 cccaaattga tgcaacccaa ggcaacgcca aaaaaaagaa tcaggaaaac cactacacaa
      961 aattagaccg tgactttttg cttgagctat cccgaattgg gggcaacatc aatcagattg
     1021 caaaggcaat aaatactgat attgcaagca gtcgtcccct tgatgctgca aggcttttgc
     1081 acctgttaat agggattgat cagaccttaa aggaattgaa aaaatgattg ttcaattctt
     1141 tagatatggg aacggtttaa gtaaaggtcc actggattat ttacttggta aagaccgtga
     1201 tcgagattat gcaaaagtcc tacagggcga tgtttccgaa gtatcaggat taattgatac
     1261 gtcaccttat gcaaaaaaat atacatccgg ctgcctaagt ttttatgagc atgatttatc
     1321 tgaccaggat aaacaaaaaa tcatgcagga ttttgagcaa gccttattcc ctggcatgga
     1381 tcagagccag taccgtgtct tgtggattga gcatcaagac aaattaaacg aagaaacagg
     1441 ggagcgaaga ttagagctta acttcctaat ccctaatgtt gaaatcctta cagggcaacg
     1501 tttacagcct tattatgata aagctgatcg tcctcgtatt gatctgttta agaagattac
     1561 aaactatgaa tatcaactgc atgatgcaga tgaccccctc tatcgccaag ccgttacaac
     1621 ggcaaaaaac ttgcctaaaa ctgttaatga aatcaaggaa acgcttgata ttgaagcaac
     1681 gagagccgtt gaaggtggac taattacaga tcggcagagc atgaaaaaat ggctattgga
     1741 tcttggtctt gaagtcacca gagaaaccaa gaaaagccta tccattaaaa atccgaatga
     1801 tgacgaaaaa gcccgcccga taaggcttac aggtgcaatc tatgagcaag attttagact
     1861 tacagaaacg agccaacaac ttactatcgc agcatcagaa cgatatagac gagaagctaa
     1921 acagcgaaat cagtcagata ttcaaagata tgcggaatac agtgcaaagc gaagcacaga
     1981 gcttgagcag cagtatagac agcaccaaaa cgtatataca gcagaaacag agcgaagcaa
     2041 cgaacgagat attgcagcag atcgaccaga ctacagctca aaccaagaag cagcagcaac
     2101 aaggcatgac agccctattg caagaacaac aacagcagat caaacagcta caagcgaact
     2161 tgcagcagtt gaacagcttg agccaagaaa cagcccaagc agccaaatta aagaaaaccc
     2221 ttattacatc gaatatagcc ttgatttcac tggcatgtat aacgcttatc agcagtattt
     2281 gtctggggta cgtcagcaag agcaaataca gcgacatcac agagatggag aacaaagtcc
     2341 agtggttaaa aagccaaggg gcgagcctga atattcagaa gtgtgggaca gagaaaaaat
     2401 ggaactggtg cgtccagatc gacccgaaag cgcagcagta cagcaacaac atgcgaatag
     2461 tgcaggaaac caattaaatg aatctcgaag cacagttatt gcagattatc gagcagcaac
     2521 agcagcagct caaagagcaa cagaagcagc aagagcaagc cttgcagctc attcaggcac
     2581 agaacagaac catagacgaa ttagagaact acaacagcaa actagtgaag cactgcaacc
     2641 agttgaacga gaaagaaaac gagctgatca atatcatcaa gaaactacag aatccgaagc
     2701 tatcagagga tttattgcaa ggcttggaga gcagcttaaa acagcgatta cagagccatt
     2761 tagagcaatt agtgactggg ttaaatctaa agaacgagat caacgaacta ttgccaacga
     2821 tgatctatac agaaatcgag aagcagacag caccattgaa cgaacagctt caaaggaaac
     2881 tagactcagt gcaacagtat cacgaaaaat tcgagggttt gatcaaacaa atatcttcaa
     2941 ggctttagat gaactggaca gacgtagaga gttgcaactg gagcaacaac gtaaaaatga
     3001 caggagttat tcacctagat tttgatactt ttttttctgc ggagcattgc ccttgcaatg
     3061 ctgtcctcga aaaaaagcat cttcaaaggt cacatatttg cgacattttg tcgcaatatt
     3121 ttgttttgaa aatcagtcat ttgacagcaa ttcaaaaagg tgtaatattt tcatcaggcg
     3181 aaaaaaaagc aggtttggcg acccgctttt ttctctttgt taaacaaacg cttaaagcat
     3241 ccgtaaaact caaattcgat acttgtattt tactgatgtt ttgagccaat gcaacacttg
     3301 gacgtgtttc atgctcaata aaacgcaatt ttcagacgat ttttacgaaa aactcccaaa
     3361 aaaaccgtat tgctcggatg atttagggcg tggggtgatt attcgcccaa aacgtaccgc
     3421 aatccagaag ccatacattc agcataatcc cccttgtctt gttagctcgt tggtgttcga
     3481 tatagaccgc caagacgctt attttgcgtg gtctgacgca aatttaccga ccccaacatg
     3541 gatagccaaa aatcgccaaa atggacatgc acatattggc tatatgcttt tagctccagt
     3601 gtgtaccacg catcgagcaa agcagaatgt catacagtac cttgccaaga ttgagcaggc
     3661 gtatagcttg gcgttaggtg cagatcgtgg ctatacgggg ttaatcacta aaaatccatg
     3721 tcacggaaca tgggaaaatc atacctttgg cgttcaacca tacgacctaa attatttagc
     3781 cgattttgta gagcttcagg aactaaaaac cgacttaaaa gaagtttcag ggcttgggcg
     3841 taactgtatg atgttcg
//
