LOCUS       NZ_CP061384             1934 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae strain NU-CRE236 plasmid pCRE-236-4, complete
            sequence.
ACCESSION   NZ_CP061384
VERSION     NZ_CP061384.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN14453497
            Assembly: GCF_012029895.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1934)
  AUTHORS   Ozer,E.A., Krapp,F. and Hauser,A.R.
  TITLE     Carbapenem-resistant Klebsiella pneumoniae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1934)
  AUTHORS   Ozer,E.A., Krapp,F. and Hauser,A.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-SEP-2020) Medicine, Northwestern University Feinberg
            School of Medicine, 645 N Michigan Ave, Suite 900, Chicago, IL
            60611, USA
REFERENCE   3  (bases 1 to 1934)
  AUTHORS   Ozer,E.A., Lopez,F. and Hauser,A.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAR-2020) Medicine, Northwestern University Feinberg
            School of Medicine, 645 N. Michigan Ave., Suite 900, Chicago, IL
            60611, USA
  REMARK    ?
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 20-AUG-2020
            Assembly Method :: Flye, Unicicyler v. 2.7.1, 0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 133.76007750862843x
            Sequencing Technology :: Oxford Nanopore MiniION, Ilumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 01:23:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,416
            CDSs (total)                      :: 5,293
            Genes (coding)                    :: 5,156
            CDSs (with protein)               :: 5,156
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 137
            CDSs (without protein)            :: 137
            Pseudo Genes (ambiguous residues) :: 0 of 137
            Pseudo Genes (frameshifted)       :: 59 of 137
            Pseudo Genes (incomplete)         :: 80 of 137
            Pseudo Genes (internal stop)      :: 30 of 137
            Pseudo Genes (multiple problems)  :: 30 of 137
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP061384.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1934
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="NU-CRE236"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pCRE-236-4"
                     /geo_loc_name="USA: Chicago, IL"
                     /lat_lon="41.8945 N 87.6208 W"
     gene            join(1877..1934,1..929)
                     /locus_tag="HCV86_RS26940"
                     /old_locus_tag="HCV86_026935"
     CDS             join(1877..1934,1..929)
                     /locus_tag="HCV86_RS26940"
                     /old_locus_tag="HCV86_026935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_016245711.1"
                     /translation="MQNPKLQNLTDYSPSDAPWDAHKSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGETLNRMNMAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPSMFTRDYVKHDRWVELWRECLRVNYDPNVDVRAVKPRKPKDGE
                     SLASATAELVRGAVAETLKYSTKPADMVADPEWFLELTKQTHKRRFVATGGALKDILKL
                     DQETDADMVIGDDIPEGDDDGSRIAFEWKTESKKYRRSPSKDKAESD"
                     /name="protein rep"
     gene            1588..1890
                     /locus_tag="HCV86_RS26945"
                     /old_locus_tag="HCV86_026940"
     CDS             1588..1890
                     /locus_tag="HCV86_RS26945"
                     /old_locus_tag="HCV86_026940"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_061321640.1"
                     /translation="MAGSIRARSLYLYLRDNSGDKKWHQALRTKASGLICVVEGFGSIL
                     LGVVALKATPATTAIVRGCDHLQKFDSKRQPTGDTAMITRQMSHRPAWGGVHAKP"
                     /name="hypothetical protein"
     Typing          complement(656..844)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.947"
                     /coverage="98.0"
                     /evalue="1.39e-59"
ORIGIN
        1 acgctcacaa aagcgtttct gacgacgtag gtgggattta ccttctcgca gccgaatatg
       61 agcgctacgg ggcgcgtatg gcttcctgtg gcggtttact gaggtttggt tggtctaccc
      121 tcaaagaaac tggagaaact cgccttaggc tacgtgaggc gcatttctgc cgtgtccggc
      181 actgtcctgt ctgccagtgg aggcgatccc tgatgtggca agcccgtttt tatcagtccc
      241 tgccgcgtat tgttgcggat tatccagatg cacgctggat gttcctgacc ctcacagtgc
      301 gaaactgcgc gatcggggaa ttgggtgaga cacttaaccg aatgaacatg gccttccagc
      361 gacttaagga tcgcaaagag tttcgacctg ttcagggctg gatccgcacc acggaagtta
      421 cacgtggaag tgacggtagt gcgcacccgc actttcacac tctgatgatg gttcctccct
      481 caatgttcac gcgagattac gttaaacatg accgctgggt agagctttgg cgagagtgtt
      541 tgcgtgtgaa ttacgatccg aatgttgatg ttcgagcagt aaaaccccgc aagcctaagg
      601 acggagaatc attggcttct gcaactgcgg aacttgtacg gggcgcagtg gctgaaaccc
      661 tgaaatattc cacgaagccg gctgacatgg ttgctgatcc tgaatggttc ctcgaattga
      721 ctaagcagac acataagcgc cgatttgtgg ctaccggtgg cgcactcaaa gacatactga
      781 aactcgatca ggaaactgat gccgatatgg taatcgggga tgatattccc gaaggcgatg
      841 atgatggttc acgcattgct tttgagtgga aaaccgaatc caaaaagtac cgtcgctcac
      901 cgtcaaaaga taaagctgaa tcagactgac agggtgtcgg ggcgcagccc tgaccacgac
      961 gtttttgaga ggacgccgct tgtcggcggt actccaaaaa cacatcttgt cctattagtt
     1021 ctactccgat gcaggatagg gctaacgccg caaagtgacg tcactcaatt actgagttcg
     1081 gtttccgaac tcagttggga caagatgtgt ttttggtaca ccgccatcac gatgtcggtg
     1141 ccaaaaacga ttcgtcaggg ctgcgccccg acaccctgcc aacacctcac gcagtcagat
     1201 taaaatctgc cagcgctcgc cgtttccgaa atcgtcaaac tctaaatcgt ggggtcccgc
     1261 tggcttgcca gtgggttccg atttagtgat tgacgacatt gctgattgaa aaattggctg
     1321 aggtggttgg attcacgaag tgaggccaac cacctggaag acggttttta attgtctggt
     1381 accggataca accagaacga atggagttgg ttctgtcgtg atgcgaaaaa gtatgggttc
     1441 gcaaatcaca gactaaatag atttacccaa ttccattcga gtgaggttgt tatgtttttt
     1501 gaggttctta atcatgttga tagtgcgttg agcgttgctg tttcgctcct agcgttgtgg
     1561 cagtttttgg tggcaggtgg gcgttgaatg gctggttcga tccgcgcgcg atccttgtat
     1621 ttatacttaa gggataactc tggcgataaa aaatggcatc aagccttgcg taccaaggct
     1681 tcggggctta tttgcgttgt agaaggtttt ggaagtattc tgttgggagt ggtcgcctta
     1741 aaagcgaccc ccgcaacgac ggccatcgtt cgggggtgtg accacctgca gaaattcgat
     1801 tcgaagcgac aaccaacagg tgatacggca atgataacac gtcaaatgag ccatcgccca
     1861 gcatggggcg gtgtgcatgc aaaaccctaa actccagaac ctcacggatt actccccctc
     1921 agacgcgccc tggg
//
