LOCUS       NZ_CP061070             1459 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae strain HKP0018 plasmid pHKP0018.8, complete
            sequence.
ACCESSION   NZ_CP061070
VERSION     NZ_CP061070.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15946735
            Assembly: GCF_014495785.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1459)
  AUTHORS   Xanthopoulou,K., Carattoli,A., Wille,J., Biehl,L., Rohde,H.,
            Farowski,F., Krut,O., Villa,L., Feudi,C., Seifert,H. and
            Higgins,P.G.
  TITLE     Antibiotic resistance and mobile genetic elements in extensively
            drug-resistant Klebsiella pneumoniae sequence type 147 recovered
            from Germany
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1459)
  AUTHORS   Xanthopoulou,K., Carattoli,A., Wille,J., Biehl,L., Rohde,H.,
            Farowski,F., Krut,O., Villa,L., Feudi,C., Seifert,H. and
            Higgins,P.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-AUG-2020) Institute of Medical Microbiology,
            Immunology and Hygiene, University of Cologne, Goldenfelsstrasse
            19-21, Cologne 50935, Germany
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9b
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 85x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 01:23:33
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,596
            CDSs (total)                      :: 5,471
            Genes (coding)                    :: 5,351
            CDSs (with protein)               :: 5,351
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 49 of 120
            Pseudo Genes (incomplete)         :: 66 of 120
            Pseudo Genes (internal stop)      :: 21 of 120
            Pseudo Genes (multiple problems)  :: 13 of 120
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP061070.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1459
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="HKP0018"
                     /isolation_source="rectal swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pHKP0018.8"
                     /geo_loc_name="Germany"
                     /lat_lon="53.4608 N 9.9836 E"
                     /collection_date="2015-02-16"
                     /collected_by="university hospital in northern Germany"
     gene            1..441
                     /locus_tag="IBX29_RS27795"
     CDS             1..441
                     /locus_tag="IBX29_RS27795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000031238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000031238.1"
                     /translation="MSKDVERITQINDQGEIIGGFVAVIRPKQKSAFQRHFTMNQDALR
                     ILAKELTGEQFKVLMLMLADLDYENFIQIAQADIAETLGMQKTNVSRAVRALLDVGVIF
                     EGPKVGRSKTYRLNEQFGWKGTVTNHKKALKNGFSVIQGGRI"
                     /name="hypothetical protein"
     Typing          1051..1131
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.902"
                     /coverage="87.0"
                     /evalue="4.46e-26"
     Typing          complement(676..936)
                     /name="Col(MG828)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.13"
                     /coverage="100.0"
                     /evalue="1.84e-104"
ORIGIN
        1 atgagtaagg atgtcgagag aatcactcag ataaatgacc agggtgagat tatcggcggc
       61 ttcgttgccg ttatccgccc taaacaaaaa tcagcatttc agaggcattt caccatgaat
      121 caagacgcat tacggatctt ggctaaggaa ttaaccgggg agcaattcaa ggtcttaatg
      181 ctgatgcttg cagatctgga ttacgaaaac ttcattcaga tcgcccaagc agatattgct
      241 gaaactttag ggatgcagaa aacgaatgtt agtcgcgccg ttcgcgcgct actggatgtt
      301 ggggtgatct ttgagggacc taaagtcggc agatcaaaaa cataccggct gaatgaacaa
      361 tttggttgga aaggcaccgt aaccaaccac aaaaaggcac tcaaaaacgg ctttagtgtc
      421 attcagggcg gccggattta aagagccagc ggcaggcgga caatccacag aacattgcat
      481 gcaatttcta gtggattgtc tatcctgcat tgctcttttg ccgcctcaaa atcccttgcg
      541 tgtttttgct ccccgatctc cagaacgacc gagccgccac ggttccggca gcgccttgag
      601 cgcaaccgga aaccgtctgg ggagaccccc agacccccca tcgctgtaac accgacggtc
      661 tacgaccacc taccaaccga gtggctgctt gtaccgtgca aatgggcttt gcagggggct
      721 ggcgcggttc ctggcgacct gaaagcccct ggctaggggt atcggcgcgc ctgacctcct
      781 gaaacgctct gtaagcgttt ttcgcgcctt ccatgccctg acgggcattt aaaccccgcc
      841 tcgtgcgtct gagagcttct gagcgcgttt gaagggctat ctgacgactc atccccgaaa
      901 gaacaacagc ggaatcaccg acagcatgcg agaggtggca ccgctcgccg cagccccagc
      961 gaccgaacgt tagtgagcga gtgggcgagg aagcggaaga gaacaggaaa ccacattgag
     1021 cacgtacgca ctgatacggg gtgtcggggc gaagctctga ccagatggca aacggaatat
     1081 cgtcgcgggt gacggtatta catttgcaca tcctgtcctg atttctgagg cgttttaacg
     1141 gtgaacggac ggcaaaaaca tgatggagct gttgaacgtg gagagcgaga aatcggacaa
     1201 aaatcatggc tgacgaggct tgcagaggag taagccagta tacactccgc tatcgctacg
     1261 tgactgggtc agggcttcgc cccgacaccc caaagagcag ctaggataaa tatctaatgg
     1321 aatcaatgcg ttagacgcct aatataaaga tacagaaagg agaataaaaa cattaataaa
     1381 atctaagggt tacagttgac atagttatca ataatgataa cactgttatc attattgata
     1441 actcaaatag ggttcaaag
//
