LOCUS       NZ_CP061069             2044 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Klebsiella pneumoniae strain HKP0018 plasmid pHKP0018.7, complete
            sequence.
ACCESSION   NZ_CP061069
VERSION     NZ_CP061069.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15946735
            Assembly: GCF_014495785.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Xanthopoulou,K., Carattoli,A., Wille,J., Biehl,L., Rohde,H.,
            Farowski,F., Krut,O., Villa,L., Feudi,C., Seifert,H. and
            Higgins,P.G.
  TITLE     Antibiotic resistance and mobile genetic elements in extensively
            drug-resistant Klebsiella pneumoniae sequence type 147 recovered
            from Germany
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2044)
  AUTHORS   Xanthopoulou,K., Carattoli,A., Wille,J., Biehl,L., Rohde,H.,
            Farowski,F., Krut,O., Villa,L., Feudi,C., Seifert,H. and
            Higgins,P.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-AUG-2020) Institute of Medical Microbiology,
            Immunology and Hygiene, University of Cologne, Goldenfelsstrasse
            19-21, Cologne 50935, Germany
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.9b
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 85x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 01:23:33
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,596
            CDSs (total)                      :: 5,471
            Genes (coding)                    :: 5,351
            CDSs (with protein)               :: 5,351
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 120
            CDSs (without protein)            :: 120
            Pseudo Genes (ambiguous residues) :: 0 of 120
            Pseudo Genes (frameshifted)       :: 49 of 120
            Pseudo Genes (incomplete)         :: 66 of 120
            Pseudo Genes (internal stop)      :: 21 of 120
            Pseudo Genes (multiple problems)  :: 13 of 120
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP061069.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="HKP0018"
                     /isolation_source="rectal swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pHKP0018.7"
                     /geo_loc_name="Germany"
                     /lat_lon="53.4608 N 9.9836 E"
                     /collection_date="2015-02-16"
                     /collected_by="university hospital in northern Germany"
     gene            301..642
                     /locus_tag="IBX29_RS27785"
     CDS             301..642
                     /locus_tag="IBX29_RS27785"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_039819495.1"
                     /translation="MPLKGNGNKFINNGIGVHNEAQVSVELNDSTFENNKIGYLEGKLD
                     RIDELFKNETPELAKKELIEELSKAIKRGESEKAESIFEKFDFHKWIASGANIAKIVES
                     LASAMNIHS"
                     /name="hypothetical protein"
ORIGIN
        1 acgccccgga ctccggcagg ataaacaggc aaattggtgg gaacgtaact taaccgcgaa
       61 agagttaggc tctaccccgt ctcgctgtac gataacaagc acctgataaa atgagcgacg
      121 aaggcagtag taagcggtgg cgtgtgattg caagaaagtc gaacacgaca cccacacaat
      181 caagcccttg caaggtgaga cacacaagaa aagagcttga cgaaggtcgc tacgctcccc
      241 gtggtcttat atacccacca cgggggcatt aggctaactt taaccaaaac tggaggaact
      301 atgccgctaa aaggtaatgg aaataaattc attaacaacg gtatcggcgt tcacaacgaa
      361 gcccaagtca gtgtggagct taatgattct acttttgaaa ataataaaat agggtactta
      421 gagggtaagc tcgatcgcat agatgaactc ttcaaaaatg aaacgccgga actcgctaaa
      481 aaagagttaa tagaagagct tagcaaggct ataaagcgtg gggagtcaga aaaagcagag
      541 tctattttcg aaaaattcga ctttcacaag tggatagcct ctggcgctaa cattgcaaag
      601 atcgttgagt cgctagcgtc tgctatgaac attcattcgt aacctttgta aatatactcg
      661 aaccaaatac gccacaatac tcatattgaa atgcccgtca ggtaactttg ctttctgagc
      721 ctgacggatt tcacgatcgt tgatatgcag gcccactcca caattaatgg cctcattacc
      781 agacatataa acatcagctg acgaatctat actgtaccca atgccgcagc tttcagctgt
      841 gcaattaatt attgaaatca tacccccccc cccacattgt ctttctgaat ttaccataac
      901 gtctcattgc gcgcacccct cagacgggct gtgcgcgatt ttcccgcctg aacctcaaaa
      961 ccgcatgtct taccccctga aaacggctca gaatggcgct gatgatttct gaggctgtga
     1021 atcgttatgc agccggctgc ctggcatcag gtttcggcct gaattcaaac ccaaccccaa
     1081 aaaagagtat ctttcgcctt gcctaaaacg gtgaacgggc gggcaattta ttgcgtaact
     1141 gtgagacctt gccggcgcag ccggaaaacc cgctgtcagc acgttcagga agggggtgat
     1201 gtacaaatgg cacagaggat gaaactgacg taaaagtgac gtatgaactt aaggagtgat
     1261 gtaaaaatga cgcaaaagtg acgtataagc tgaaggagag atgtaattct gtagtcttat
     1321 accaggtgaa tgcctgtcca gcatcagctt ctgtagttta tctgtagtct catcttagct
     1381 tttgtagtct atctgtagtc ggggaggata acccgttcat gcctgcatga acgatacagt
     1441 gaggaacgct ttttttgtca cgatctcccc ttaacctgcg taaatcaccc gccatggttg
     1501 attatttttc aacctcaaaa tggtcataca cctaacgcag ccgcgatttt catcgcaact
     1561 gcatgaatta aaagaaaaaa aaggaaaatt ccgttttcac gagtaatacc caggtattaa
     1621 aaatccactg taattacatg aaaataaaga aataaagagt aataccgggg tattactggc
     1681 cacggataaa tttcggcatg ttcagggctg acttttgttg tttgttcacg ttcagactcc
     1741 gtgtgacagt gcttatctca gcaaggcaga tatgacgctt cctcgcactg acagactccg
     1801 ctagtcagta ctgcggcgag cgttgtcagc ttaggtttgg aaaggatggt tttgatgtag
     1861 atgctttaaa tgtacaaaag ccccgtgaca gaatcacagg gcttcggtac tctaattctt
     1921 gcagatacct gccaagatca gacgtagcaa tcaaatctta gcagggctgg ctagtcatgt
     1981 cactaccagc ttaataccat tcaacgacat taaaatcata tctgcacctt agacgctcag
     2041 gtct
//
