LOCUS       NZ_CP060525             2096 bp    DNA     circular CON 15-OCT-2023
DEFINITION  Salmonella enterica strain SLR1_8250 plasmid pS8250-3, complete
            sequence.
ACCESSION   NZ_CP060525
VERSION     NZ_CP060525.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15666299
            Assembly: GCF_014334255.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Kuleshov,K.V., Pavlova,A.S., Mikhaylova,Y.V., Yanushevich,Y.G.,
            Speranskaya,A. and Podkolzin,A.T.
  TITLE     Genetic determinants of drug resistance in non-typhoid Salmonella
            enterica isolates in Russia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Kuleshov,K.V., Pavlova,A.S., Mikhaylova,Y.V., Yanushevich,Y.G.,
            Speranskaya,A. and Podkolzin,A.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2020) Molecular Epidemiology, Central Research
            Institute of Epidemiology, Novogireevskaya 3A, Moscow 111123, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: AUG-2020
            Assembly Method                   :: Unicycler v. 0.4.2
            Assembly Name                     :: CRIE_SLR1_8250
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200x
            Sequencing Technology             :: Illumina HiSeq, MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/15/2023 04:31:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,673
            CDSs (total)                      :: 4,552
            Genes (coding)                    :: 4,368
            CDSs (with protein)               :: 4,368
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 184
            CDSs (without protein)            :: 184
            Pseudo Genes (ambiguous residues) :: 0 of 184
            Pseudo Genes (frameshifted)       :: 75 of 184
            Pseudo Genes (incomplete)         :: 120 of 184
            Pseudo Genes (internal stop)      :: 42 of 184
            Pseudo Genes (multiple problems)  :: 47 of 184
            Pseudo Genes (short protein)      :: 1 of 184
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP060525.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SLR1_8250"
                     /db_xref="taxon:28901"
                     /plasmid="pS8250-3"
                     /geo_loc_name="Russia"
                     /collected_by="CRIE"
     gene            1106..2095
                     /locus_tag="H9L29_RS23215"
                     /old_locus_tag="H9L29_23215"
     CDS             1106..2095
                     /locus_tag="H9L29_RS23215"
                     /old_locus_tag="H9L29_23215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_024136759.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          2..83
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          complement(1822..2013)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 ggggtgtcgg ggtgcacccc tgaccagatg gcaattgtga tagcgtcgcg tgtgacggta
       61 ttacaattac acatcctgtc ccgaaaattc ccgccgtttc tcggtttttt gagcgtcgca
      121 gaccgcacga caaacgaacc taaggtgagt ttgtataagt gcgcacttcg tgagattccc
      181 tgactgccag tttgtcgatt gcgcggaacg gctgcggcac gaaaacggca aaatgattta
      241 ctcgccgttt gtgtgggttg ttttgtgggg tgtcaatggg gttgtggtct tttttgtggg
      301 ttaaagtgtg ggtgattgtg tgggctgtgt gttttgagtt gtgggtgatt atgtgggtca
      361 ttgtgtgggc tgtatgcacg gcattttttt gttctcctaa aacacaggca cgataagcgg
      421 cgtacacaaa acggggcgtt tcgctccgtc gcttgtgcca aaggggacac ccctttgcaa
      481 ccctgtgcgg ttctacgaac ctggtcagga ctgcgccccg acaccccgcc aacgcctcac
      541 ggaacgcgaa aaaattccgc gtaccgttca ccgttccctg attcgtcaaa cagaaaatcg
      601 cgggggcccg cgcctccggc gtgggttccg attttgtgat tgacgacggc acgggaaaaa
      661 cactggggat ggtggttggt gtcacgcagt gaggccaacc acctgcaaga cggttttttt
      721 tgttgttcac aaaatcgggg tgaaagtctg tggatgagat gggtgtaagt gggtggggtt
      781 gggtgttttg ggttactgaa aatcccgctc aaaattcaag cgaatctcgc gcgcgatcct
      841 tgtatttata cttaagggat aactctagga ttcaaattcg cctccagccc ttgtgccgca
      901 aggcctgaag ggggatttgt cggaaaatgg ttttggagtt attctgtcgg gagtggtcgc
      961 attaaaagcg acccccgcaa cgagggcaat cgttcggggg tgtgaccacc tgtaggaatt
     1021 cgaattggtg atacgactaa cacaacaggt gatatggcaa tgataacacg tcagatgagc
     1081 catcgcccac tatcgggtgg tgcgcatgaa aaaccctgat ctccagaacc tcacggacta
     1141 ttccccctca gatgcgccct gggacgctca cagaagcgtt tctgatgacg tgggagggat
     1201 ttacctgctt gcagccgaat atgagcgcta cggggcgcgt atggccctct gtggtggttt
     1261 actgcgtttc gggtggtcta ccctcaagga aaccggagaa acgcgtctga ggctgcgtga
     1321 ggcgcatttc tgccgtgtcc ggcattgtcc tgtctgccag tggaggcgct ccctgatgtg
     1381 gcaagcccgt ttctaccagt ccctgccgcg tatcgtggcg gattatcccg atgcccgctg
     1441 gatgttcctg actctgaccg tgcgcaactg tgcgatcggg gagctgggcg agatgctgaa
     1501 ccggatgaat gcagcttttc agcgcatgaa ggttcgcaag gagttccggc ctgtgcaggg
     1561 ctggatacgt accacggaag tcacccgcgg gagcgacggc agcgcacacc cgcacttcca
     1621 caccctgatg atggtgccgc ctggcatgct aaatgggaaa agttacgtca ggcatgaacg
     1681 ctgggttgaa ctctggcggg agtgtctgcg ggtcgattat gacccgaatg ttgatgtccg
     1741 ggcagtgaaa cctcgtaagc cgaagggcgg cgaatcgctg gcctgcgcga ccgccgaact
     1801 ggtgcgcggt gcggtggccg aaaccctgaa atattccacg aagccggctg acatggtggc
     1861 cgatcctgaa tggttcctcg aactgacccg ccagacgcac aagcgccgct ttgtggcgac
     1921 cggcggcgca ctcaaagacg tgctgaaact cgatcaggaa actgacgccg acatggtgat
     1981 cggtgatgat atttccgagg gcgacgatga cggttcacga atcgcgttcg agtggaaaac
     2041 cgaggtcaga aagtaccgtc gctcaccgac gaaagataaa actgaatcag gctagc
//
