LOCUS       NZ_CP060520             4073 bp    DNA     circular CON 15-OCT-2023
DEFINITION  Salmonella enterica strain SLR1_7627 plasmid pS7627-3, complete
            sequence.
ACCESSION   NZ_CP060520
VERSION     NZ_CP060520.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15666300
            Assembly: GCF_014334235.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4073)
  AUTHORS   Kuleshov,K.V., Pavlova,A.S., Mikhaylova,Y.V., Yanushevich,Y.G.,
            Speranskaya,A. and Podkolzin,A.T.
  TITLE     Genetic determinants of drug resistance in non-typhoid Salmonella
            enterica isolates in Russia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4073)
  AUTHORS   Kuleshov,K.V., Pavlova,A.S., Mikhaylova,Y.V., Yanushevich,Y.G.,
            Speranskaya,A. and Podkolzin,A.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2020) Molecular Epidemiology, Central Research
            Institute of Epidemiology, Novogireevskaya 3A, Moscow 111123, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: AUG-2020
            Assembly Method                   :: Unicycler v. 0.4.2
            Assembly Name                     :: CRIE_SLR1_7627
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200x
            Sequencing Technology             :: Illumina HiSeq, MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/15/2023 04:34:20
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,928
            CDSs (total)                      :: 4,807
            Genes (coding)                    :: 4,681
            CDSs (with protein)               :: 4,681
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 59 of 126
            Pseudo Genes (incomplete)         :: 84 of 126
            Pseudo Genes (internal stop)      :: 18 of 126
            Pseudo Genes (multiple problems)  :: 30 of 126
            Pseudo Genes (short protein)      :: 1 of 126
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP060520.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4073
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SLR1_7627"
                     /db_xref="taxon:28901"
                     /plasmid="pS7627-3"
                     /geo_loc_name="Russia"
                     /collected_by="CRIE"
     gene            join(3891..4073,1..732)
                     /locus_tag="H9L30_RS24460"
                     /old_locus_tag="H9L30_24460"
     CDS             join(3891..4073,1..732)
                     /locus_tag="H9L30_RS24460"
                     /old_locus_tag="H9L30_24460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001448734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="WP_001448734.1"
                     /translation="MPNTIHYPHVIPFISQGKINAIKSTFGNNLSDRECYGIYIWSQKA
                     SSAIYPLLQQLEVTLRNSIDKEATKLIGQKWWDNVYTDTSKSKHGDFIHNINKAKRRYE
                     NEFKKKNPSMANTKIIAPHDDIIAHTDFYTWQAVLSDAFHTQSRSEASRALWPRLTYRV
                     LKGLDRSKDEGTARIDFLNELNEIRNYRNRLSHNDCIWIKIHSKNLQSAVETIREKINK
                     IEGLIKTINPQVHLSLTKWGSFYHAKRICSQKEAELHLGKGIINSTTDEMNTILDQLYA
                     LTADGKLTGVVKRNTNNIAFHKF"
                     /name="Abi family protein"
     gene            1326..1919
                     /locus_tag="H9L30_RS24465"
                     /old_locus_tag="H9L30_24465"
     CDS             1326..1919
                     /locus_tag="H9L30_RS24465"
                     /old_locus_tag="H9L30_24465"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012537770.1"
                     /translation="MSGRKFGRLPNWWARSSWLVNNVRSNEIGGGIASMKCLLALSVLI
                     DFHSRTASVSFTGMERLTGLSRPMIVKGVAKLEKDGLIKIDREMFVNSYELTVQPNDDR
                     WAKVPVDTIRKKLNTISNRGMAPFVALKLYLTIISLRYQSNNTVKVTHETLRSYTGVQP
                     NQIRFGLDVLYCSRLIHLQPKEDRESNIYEIIGL"
                     /name="hypothetical protein"
     gene            2692..2886
                     /locus_tag="H9L30_RS24470"
                     /old_locus_tag="H9L30_24470"
     CDS             2692..2886
                     /locus_tag="H9L30_RS24470"
                     /old_locus_tag="H9L30_24470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041633.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHELA
                     EELQNSIQVRFETESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3552..3665
                     /locus_tag="H9L30_RS24820"
     CDS             3552..3665
                     /locus_tag="H9L30_RS24820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071531573.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHALTPLAAATGN"
                     /name="replication initiation protein"
     Typing          complement(2178..2433)
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.023"
                     /coverage="89.0"
                     /evalue="1.24e-101"
     Typing          complement(2558..2656)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.0"
                     /coverage="100.0"
                     /evalue="1.35e-41"
     Typing          complement(2968..3054)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.43e-38"
     Typing          3065..3624
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.204"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aactcgattg ataaagaagc gacaaaacta ataggccaaa aatggtggga taatgtatac
       61 accgacacat caaaaagcaa acacggtgac ttcatacata atataaacaa agcaaaaaga
      121 agatatgaga atgaattcaa gaaaaaaaac ccatcaatgg caaataccaa aataattgca
      181 cctcatgatg acatcattgc acacacagat ttttacacat ggcaagcggt tttgagcgat
      241 gcttttcata cacaatcaag atctgaagca tcaagagcct tatggcccag gctcacctac
      301 agagtactga agggattaga tagaagcaaa gatgaaggca cagccagaat tgatttctta
      361 aacgagctga atgagatcag aaactacaga aataggttat cgcataatga ttgcatatgg
      421 ataaaaatac actctaaaaa tttgcaatct gcagtagaaa caataagaga aaaaataaac
      481 aaaatagaag gactgataaa aacgataaac ccacaggtac acctatcatt aacgaagtgg
      541 ggttcctttt atcacgccaa aagaatatgt tctcaaaaag aggccgaatt gcatctaggc
      601 aaaggaataa tcaatagcac aacagatgag atgaacacaa ttctagatca actatacgca
      661 ctaactgctg acggaaagct aacgggtgtt gtaaaacgaa ataccaacaa tatcgcattt
      721 cacaagtttt agatcacaaa atagaaaagg cccgacagtt tcctgtcgag cctcatccaa
      781 atctcttgcc attatcacct ttcggtggag cgtggcctta atgtcattgt gaatctataa
      841 aaatttcaca atgcattaaa gcgaaagctc aaggcttcac tgccatacat gatacatcat
      901 catcaggaaa aagagcaaac tatttcccat gatcacgcca aagcttacca tccaccattt
      961 accaatagat caaaaaacac acaacaaaaa taactaaaaa cgccgattaa accagcatta
     1021 tcaaatttac atttaccagt taaaaaacga taaaaacaag ataacatcat gttttatatg
     1081 ggaaaacaag cagccaccaa atattgcttt atctagattt attctaataa gcgtatataa
     1141 agttaaaaca caacaactta gtatgcgact ggaggaccaa ttggaaaccc tcaacaattt
     1201 gctggtaacg ctaacttccg caaagccgga ggttttggtt tctgttgtat ctttaggtgc
     1261 aatggttttc atgtatatga taataaagct atttatatct ctccttgacc gaaaatgggg
     1321 taaaaatgag cggtagaaaa tttggcaggc ttccaaactg gtgggcccga agctcatggc
     1381 ttgtaaacaa tgttcgttca aatgagatag ggggcggcat tgcatcaatg aaatgcttgt
     1441 tagctctatc cgtcttgatt gatttccatt caagaacagc ctcagtatca tttaccggaa
     1501 tggaaagact gactggacta agccgcccca tgatagtgaa aggagtagcc aaacttgaga
     1561 aagatggtct tataaagata gatagagaga tgtttgttaa ctcctatgaa ttaacagtac
     1621 agccaaatga tgataggtgg gcaaaagtac cagtagatac tatcaggaaa aaactaaaca
     1681 ccatatcgaa cagggggatg gccccatttg tggcattaaa actatattta acaattataa
     1741 gccttcgtta tcagtcaaat aatactgtta aggtgacaca tgaaacactg agaagctata
     1801 caggtgtcca gccaaaccag attaggttcg gcttagatgt actgtactgt agtcgcctga
     1861 tacatctgca accaaaagaa gatagagagt caaacatcta tgaaataatc ggcctatgag
     1921 gaaatgcatt taccataacg tcgcattacg cgcaccgcta aaacgcactg aacgcgattc
     1981 tgacgcagat accgcaaaaa gagatgtttt acccagtgaa aaccgaaaaa atgcgtcagg
     2041 atcgttttca gcccactgca tagctatgca tgaaaatgaa tgacgaacgg tttgggcgca
     2101 tacggtgccc atgagacaca ttttcggaca ttttcagttc gtgaatccct gactcattgc
     2161 tacatatctg aacagacacc cctggcagcg cccccagggg cgtcctgtaa aaaaacacac
     2221 cgcgccgcta gcagcacccc tgatataaaa tgatgttttt tataaaaata gtcagtacca
     2281 cccctacaaa gcggtgtcgg cgcggtgttg tagctgcgcc ggcaccgctt ttttaaatat
     2341 cgcaaagaga gcaagagaaa ctaatttttc ataactctct atttataaag aaaaatcagc
     2401 aaaaaattgt ttttgcgtgg ggtgtgggca tttcaggaat gagaacagac tcgcgttttt
     2461 ccggagtatc agcggaatta ttgattaaga aacactcgac gcagagcgaa attttatgca
     2521 acagcggctg cactgcacag ggattattta tcagttgata tgctgtgcca tgatacgtcc
     2581 taaaaaaaca ggacaggatg tgcaattgta ataccgtcgc ccgcaacgtc ttacaattac
     2641 cagctgctca gggtcccccc gacacccgga actgacggag aacaacggaa ggtgaacaaa
     2701 caacaacaaa ctgcgctgaa tatggcgcga tttatcaaaa gccagagcct gacactgctt
     2761 gaaaaactgg atgctctgga tgccgacgaa caggcagcca tgtgcgaacg actgcacgaa
     2821 ctcgcggaag aactccagaa cagcatccag gttcgctttg agaccgaaag tgaaacagga
     2881 acataacgaa gctgccgaaa acgctcacgg cttgtccgcg agcgttttcg gcagcagaca
     2941 agcccgtcag ggcgcgtcag ggggttttag cgggtgtcgg ggcgcagcca tgacccagtc
     3001 acgtagcgat agcggagtgt atactggctt aaccatgcgg catcagtgcg gattgtatga
     3061 aaagtgcccc atgccgggtg tgaaatgccg cacagatgcg taaggagaaa atgcacgtcc
     3121 aggcgctttt ccgcttcctc gctcactgac tcgctacgct cggtcgttcg gctgcggcga
     3181 gcggtactga ctcacacaaa aacggtaaca cagttatcca cagaatcagg ggataagacc
     3241 ggaaagaaca tgtgagcaac aaggcaaagc caggacaaaa ggccgcgccg ctggcgtttt
     3301 tccataggct ccgcccccct gacgagcatc acaaaaaccg acgctcaagt cagaggtggc
     3361 gaaacccgac aggactataa agataccagg cgtttccccc tggaagctcc ctcgtgcgct
     3421 ctcctgttcc gaccctgccg cttaccggat acctgtccgc ctttctccct tcgggaagcg
     3481 tggcgctttc tcatagctca cgctgttggt atctcagttc ggtgtaggtc gttcgctcca
     3541 agctgggctg tgtgcacgaa ccccccgttc agcccgaccg ctgcgcctta tccggtaact
     3601 atcgtcttga gtccaacccg gtaaggcacg ccttaacgcc actggcagca gccactggta
     3661 actgatttag aggagtttgt cttgaagtta tgcacctgtt aaggctaaac tgaaagaaca
     3721 gattttggtg actgcgctcc tccaagccag ttaccttggt tcacagagcg ccaactcttt
     3781 gaaccttcga aaaaccgccc gccaaggcgg ttttttcgtt taacactcta caactatcca
     3841 tacgtgtatg gcaacatcca atcaccacta agtgtatgat agagatggat atgccaaata
     3901 caattcatta ccctcatgta ataccattta tatcccaagg aaaaataaat gctataaaaa
     3961 gcacgtttgg taataacctg tctgataggg agtgctacgg gatatatata tggagccaga
     4021 aagcctcatc tgccatatat ccattactgc aacaactcga agttactttg aga
//
