LOCUS       NZ_CP060511             2978 bp    DNA     circular CON 15-OCT-2023
DEFINITION  Salmonella enterica strain SLR1_7697 plasmid pS7697-3, complete
            sequence.
ACCESSION   NZ_CP060511
VERSION     NZ_CP060511.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15666303
            Assembly: GCF_014334175.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2978)
  AUTHORS   Kuleshov,K.V., Pavlova,A.S., Mikhaylova,Y.V., Yanushevich,Y.G.,
            Speranskaya,A. and Podkolzin,A.T.
  TITLE     Genetic determinants of drug resistance in non-typhoid Salmonella
            enterica isolates in Russia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2978)
  AUTHORS   Kuleshov,K.V., Pavlova,A.S., Mikhaylova,Y.V., Yanushevich,Y.G.,
            Speranskaya,A. and Podkolzin,A.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2020) Molecular Epidemiology, Central Research
            Institute of Epidemiology, Novogireevskaya 3A, Moscow 111123, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: AUG-2020
            Assembly Method                   :: Unicycler v. 0.4.2
            Assembly Name                     :: CRIE_SLR1_7697
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200x
            Sequencing Technology             :: Illumina HiSeq, MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/15/2023 04:41:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,758
            CDSs (total)                      :: 4,639
            Genes (coding)                    :: 4,481
            CDSs (with protein)               :: 4,481
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 158
            CDSs (without protein)            :: 158
            Pseudo Genes (ambiguous residues) :: 0 of 158
            Pseudo Genes (frameshifted)       :: 77 of 158
            Pseudo Genes (incomplete)         :: 106 of 158
            Pseudo Genes (internal stop)      :: 24 of 158
            Pseudo Genes (multiple problems)  :: 44 of 158
            Pseudo Genes (short protein)      :: 1 of 158
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP060511.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2978
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SLR1_7697"
                     /db_xref="taxon:28901"
                     /plasmid="pS7697-3"
                     /geo_loc_name="Russia"
                     /collected_by="CRIE"
     gene            complement(922..1071)
                     /locus_tag="H9L34_RS23595"
                     /old_locus_tag="H9L34_23595"
     CDS             complement(922..1071)
                     /locus_tag="H9L34_RS23595"
                     /old_locus_tag="H9L34_23595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_162846302.1"
                     /translation="MPSEYDEQRGSTDTQLPGEYDLFDLMAKVTEEILHAPVDSGPPVG
                     REAL"
                     /name="hypothetical protein"
     gene            <2009..2164
                     /locus_tag="H9L34_RS23600"
                     /old_locus_tag="H9L34_23600"
                     /pseudo=""
     CDS             <2009..2164
                     /locus_tag="H9L34_RS23600"
                     /old_locus_tag="H9L34_23600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707212.3"
                     /GO_function="GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /name="helix-turn-helix domain-containing protein"
     gene            2258..2902
                     /locus_tag="H9L34_RS23605"
                     /old_locus_tag="H9L34_23605"
     CDS             2258..2902
                     /locus_tag="H9L34_RS23605"
                     /old_locus_tag="H9L34_23605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017900990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrB19"
                     /protein_id="WP_012954666.1"
                     /translation="MTLALVGEKIDRNRFTGEKVENSTFFNCDFSGADLSGTEFIGCQF
                     YDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNVSALGIEIRHCRAQGADFRGASFMNM
                     ITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGTQVLGATFSGSDLSGGEFST
                     FDWRAANFTHCDLTNSELGDLDIRGVDLQGVKLDSYQASLLMERLGIAVIG"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrB19"
     ARG             2259..2899
                     /name="qnrB19"
                     /gene="qnrB19"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrB19"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          complement(1107..1280)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          1259..1750
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.51"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 tcatacccgc gatcatcgcg tttattgagt ttattattta tctatgcgat tccgatgaaa
       61 aattcgcacg aaaatatggc taactcatag caaaaaaaaa gccccctaag ggcttttttt
      121 tgtacctgac ggtcagaccg attaaacata acatcccttg cgtgcaccgc ctgagaggct
      181 ctgagggcgt ttctgacggg aaaccggtaa aacaggcaac aaaccacccg aaaacccgcc
      241 agaaacgcgc aggctctgtt tttacggcat gcatgagtat gcgcgcaagt gcatagcgcg
      301 gaaattcaca ccattcagcc aggggaagtc ctgtttccgg cgttcttccc atccgaaaac
      361 ggtgaacggg gacgcaattt attgcgtggc cgtgaagcgt tgccggcgca gccggaaaac
      421 ccgctgtcag cacgttcagg aagggggtga tgtacaaatg gcacagagga tgaaagtgac
      481 gtatgagctg aaggaatgat gtaaaagtga tgtataaatg atgtaaaagt gatgcaaaag
      541 tgttgtaaaa gtgatgtaca ggccgaagga gtgttgtaaa agtgatgtat gaactgaagg
      601 agcgatgtaa ttctgtagtc aggaagaata acccgttcat gcaggcatga acgatacagt
      661 gaggaacgct tttttttgtc acgatctccc cttaacctgc gtaaatcacc cgccatggtt
      721 gattattttt caacctcaaa atggtcatac acctaacgca gccgcgattt tcatcgcaac
      781 tgcatgaatt aaaagaaaaa aaagtaatgt ttcgttttca cgagtaatac ccaggtatta
      841 aaaacccact gtaattacat gaaaataaag aaataaaagg taataccggc gtattaccac
      901 gtacgcgggc aagcgaaaaa gctataacgc ttcccggccg acaggcggcc cagaatccac
      961 aggggcatgc aggatctctt cagtaacctt cgccattaaa tcaaaaaggt catattcgcc
     1021 gggaagctgc gtatcagtcg aaccccgttg ttcatcatat tcagatggca tggggtgata
     1081 tccagtagca gagaggttgt tagcgggttt cggggcgcag ccctgaacca gtcacgtagc
     1141 gctagcggag tgtatactgg ctgactatgt tggcacggat gtggaaatca gtgaagtgct
     1201 tcatgtagca ggagaaaaaa ggcggcacca gcgcgtcagc aggatatgta gtacaggata
     1261 tattccgctt cctcgctcac tgactcgctg cgctcggtcg ttcggctgcg gcgagcggtg
     1321 ccggcttaca ggcggggcgg aaatttcctg ggagatacca ggaaggagct taacagggaa
     1381 gagataaggc cgcggcgaag ccgtttttcc ataggctccg cccccctgac aaacatcatg
     1441 aaatctgacg ctcaaatcag tggtggcgaa acccgatgcg gcttaaagat accaggcgtt
     1501 tccccctggt ggctccctcg tgctcccccg cattcctgcc tttcggttta ccggtgtcat
     1561 tccgctgtta tggccgcgtt tatctcattc cacgcctgac actcagttcc gcgaaggcag
     1621 ttcgctcctg gatggactgt atgcacgaac cccccgttca gtccgactgc tgcgccttat
     1681 ccggtaacta tcatcttgag tccaacccgg aaagacacga cttatcgcca ctggcagcag
     1741 ccactggtaa ctgatttaga ggagttagtc ttgaagttat gcgcctgtta aggctaaact
     1801 gaaagaacag atttggttac tgcgctcctc gtaagccagt taccacggtt caaagagttg
     1861 ctgctctgag aaccttcgaa aaaccgcctt gcagggcggt tttttcgttt acagagcaag
     1921 agattacgac gccacagaaa ggatctcaag aagatccttc accgtaatgg aaatctatcc
     1981 aatccgagca cataggatac acatcgttat aacgctggat ctgcgtgaat tccagcagca
     2041 gcaagagaaa gactttctac aaaccagctt acagcaggct aaatttaacc agaaaaaagc
     2101 cgctgaatta ctgggtctga cttatcatca gctacgtgcc ttgctgaaga aacaccagat
     2161 ctaatacgca tttgcaggtg tcatactggc gggtttgacg cataacgtca taaggtttac
     2221 catggcgtca ttactgtata aaaacacagg catagatatg actctggcat tagttggcga
     2281 aaaaattgac agaaatcgct tcaccggtga gaaagttgaa aatagtacat tttttaactg
     2341 cgatttttca ggtgccgacc tgagcggcac tgaatttatc ggctgccagt tctatgatcg
     2401 cgaaagtcag aaagggtgca attttagtcg cgcaatgctg aaagatgcca ttttcaaaag
     2461 ctgtgattta tcaatggcag atttccgcaa cgtcagtgcc ttgggcattg aaattcgcca
     2521 ctgccgcgca caaggcgcag atttccgcgg tgcaagcttt atgaatatga tcaccacgcg
     2581 cacctggttt tgcagcgcat atatcactaa tactaatcta agctacgcca atttttcgaa
     2641 agtcgtgttg gaaaagtgtg agctgtggga aaaccgctgg atggggactc aggtactggg
     2701 tgcgacgttc agtggttcag atctctccgg cggcgagttt tcgactttcg actggcgagc
     2761 agcaaacttc acacattgcg atctgaccaa ttcggagtta ggtgacttag atattcgggg
     2821 tgttgattta caaggcgtta agttagacag ctaccaggca tcgttgctca tggagcggct
     2881 tggcatcgct gtgattggtt agttcagcgt ttacaccggg agatgcgttt gacgatttac
     2941 ttttaagggg ttcctgtatc taattttttg ctggacat
//
