LOCUS       NZ_CP060510             3372 bp    DNA     circular CON 15-OCT-2023
DEFINITION  Salmonella enterica strain SLR1_7697 plasmid pS7697-2, complete
            sequence.
ACCESSION   NZ_CP060510
VERSION     NZ_CP060510.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15666303
            Assembly: GCF_014334175.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3372)
  AUTHORS   Kuleshov,K.V., Pavlova,A.S., Mikhaylova,Y.V., Yanushevich,Y.G.,
            Speranskaya,A. and Podkolzin,A.T.
  TITLE     Genetic determinants of drug resistance in non-typhoid Salmonella
            enterica isolates in Russia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3372)
  AUTHORS   Kuleshov,K.V., Pavlova,A.S., Mikhaylova,Y.V., Yanushevich,Y.G.,
            Speranskaya,A. and Podkolzin,A.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-AUG-2020) Molecular Epidemiology, Central Research
            Institute of Epidemiology, Novogireevskaya 3A, Moscow 111123, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: AUG-2020
            Assembly Method                   :: Unicycler v. 0.4.2
            Assembly Name                     :: CRIE_SLR1_7697
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200x
            Sequencing Technology             :: Illumina HiSeq, MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/15/2023 04:41:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,758
            CDSs (total)                      :: 4,639
            Genes (coding)                    :: 4,481
            CDSs (with protein)               :: 4,481
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 158
            CDSs (without protein)            :: 158
            Pseudo Genes (ambiguous residues) :: 0 of 158
            Pseudo Genes (frameshifted)       :: 77 of 158
            Pseudo Genes (incomplete)         :: 106 of 158
            Pseudo Genes (internal stop)      :: 24 of 158
            Pseudo Genes (multiple problems)  :: 44 of 158
            Pseudo Genes (short protein)      :: 1 of 158
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP060510.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3372
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SLR1_7697"
                     /db_xref="taxon:28901"
                     /plasmid="pS7697-2"
                     /geo_loc_name="Russia"
                     /collected_by="CRIE"
     gene            complement(532..723)
                     /locus_tag="H9L34_RS23570"
                     /old_locus_tag="H9L34_23570"
     CDS             complement(532..723)
                     /locus_tag="H9L34_RS23570"
                     /old_locus_tag="H9L34_23570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165979.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNDLDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            787..1110
                     /locus_tag="H9L34_RS23575"
                     /old_locus_tag="H9L34_23575"
     CDS             787..1110
                     /locus_tag="H9L34_RS23575"
                     /old_locus_tag="H9L34_23575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_024132211.1"
                     /translation="MLTIRVTDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGQWSSIDRVHVVAALMAIEGELRQLRQAVREQGVR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1319..>1759
                     /locus_tag="H9L34_RS24035"
                     /pseudo=""
     CDS             1319..>1759
                     /locus_tag="H9L34_RS24035"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1788..2348
                     /locus_tag="H9L34_RS23585"
                     /old_locus_tag="H9L34_23585"
     CDS             1788..2348
                     /locus_tag="H9L34_RS23585"
                     /old_locus_tag="H9L34_23585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067487.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKKQLDTLSTTVSMQFSTTEAELSRQQKKLLWRVIKGRILFPALTA
                     LSVTGGIFLGCWGLMEWQESKIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            2355..2588
                     /locus_tag="H9L34_RS23590"
                     /old_locus_tag="H9L34_23590"
     CDS             2355..2588
                     /locus_tag="H9L34_RS23590"
                     /old_locus_tag="H9L34_23590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137389.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHEVTQRNNA
                     ILNERVVILSQQVQRLAGQVDRLSRLFIANNS"
                     /name="MbeD family mobilization/exclusion protein"
     Typing          368..451
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.059"
                     /coverage="95.0"
                     /evalue="8.83e-18"
     Typing          1101..2671
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.817"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ctccgtccgg catatcgaga gcggcaaact acccgtccct tcactgggag gggtgagttg
       61 ttgccgttcc ctccaacctt tcaccatccg gcatatcgca cgatcccatg tgcaccgcaa
      121 ctcctgataa ctccagtgca aaaaaaaaaa cggatctgca tcacaacgag agtgatccca
      181 ccgctcgccg cagccccagc gaccgaacgt agtgagcgag tgggcgagga agcggaagag
      241 tcacagatgc aagcattgtg cacttacgcg cctgtgccag tgtccgcgtg tgtgctgttt
      301 atcgggtgcg ctgtttttac atctgtgcgg ctttttactc ctgacatggt gcacttccca
      361 tccatgtctg caccgatgca aaatgagata agccagtata cacatcgcta tcgctctgtg
      421 aactgggtca gggctgcgcc ccgacacccg cactgacgcg ccctggcggg cttgtctgct
      481 cccggcatcc gctcacaggc aagctgtgaa cgtctccggg agctgcatgt ttcagttgct
      541 ttcaccgtca tcgccgaagc gtgcgaggca actgcggtag agttcgtcgg cgtggtcgtg
      601 aagtgattcg cagatgtctg cctgttcgtc cgcgtccaga tcgttgagtt tttccagcag
      661 ggttagcgtc tggcttctga taaagcgagc catgttaagg gctgtttttt cctgtttggt
      721 catggtctta aggctccttg tatgggggat ttgttagggg gaatgatacc gatgaaacgc
      781 gagaagatgc tcacgatacg ggttaccgat gaggagcacg cccggttact ggaacgctgc
      841 gagggtaaac gactggcgga atggatgcgg cgggtctgtc tgggggagcc ggttgcacgc
      901 acaggaaaac tgccgacact atcgccgcca ttgctgcggc atctggctgc catcgggaac
      961 aacctgaacc agacagcccg gaaggtgaac agcggccagt ggtcttcgat tgaccgggtt
     1021 catgtggtgg ccgcactgat ggccatcgag ggtgaattgc gccagttgcg gcaggctgtc
     1081 agggaacagg gggtacggga tgatagttaa atttcatgcc agggggaaag gcggtggaag
     1141 tggcccggtc gattacctgc tggggcggga gcgtaaccgc gaaggcgcaa cggtgctccg
     1201 gggtaacccg gaagaagtgc gggaactcat tgattccacg ccattctcga agaaatacac
     1261 ttcaggcgtt ctgtcgttcg cggagaagga gttaccgccg ggtgaacgcg aaagagtgat
     1321 gacgagcttt gagcgtgttc ttatgcccgg tctcgaaaaa gaccagtaca gcattctctg
     1381 ggtggaacac caggataagg ggcggctcga actgaatttt gtcatcccga acatggagct
     1441 acagagcggt aagcgcctcc agccgtacta cgaccgcgcg gacaggccga ggataaatgc
     1501 ctggcagacg ctggttaatc atcattacgg gctgcgtgac ccgaacgcac cggagaacag
     1561 acggacgctt gtcacgccaa ataatctgcc aaaagcgaaa caggaggccg cagaagcgat
     1621 tacacggggt cttgaggctc tttaccatgc cggagcaata aaaacgcgtc aggatgtcac
     1681 agaggcgctt acagcggcag gttttgaggt ggtgaggaca accaaaagca gcatcagtat
     1741 tgccgacccg gagggggggc ggaatctcag gctaaagggg gcgctgtatg agcaatcttt
     1801 tacaaatggg aacagacttc gagaagaaac tgaaagagcg agccgcttct accgagaaca
     1861 tgctgaacag cgagttcagg aagctcgaag agtctgtaga caaggcattg agcttaaaca
     1921 ggcagaaaat cagagacgct atcagcgaac atacaacatc cgtgaaaaag caactggata
     1981 cgctgagcac caccgtgagc atgcagttca gcaccacaga ggccgaactg tcccggcagc
     2041 agaaaaaact gctctggcgg gtgatcaaag ggcggatact gtttccggcg ctgaccgcgc
     2101 tcagcgtcac gggcggcatt ttcctggggt gctgggggct gatggagtgg caggaaagca
     2161 agattgcgaa aaatatcctg actatcagag agcaggaaaa cacgctggcg aaactcgagg
     2221 caaaaacctg gggggtgacg ttcgtcaatg gcgagaacgg gaaatttctg gtgttgccgg
     2281 acggggtgaa aggggaaaac acctggacgg tgggcgacaa gaacgccgtg aggctggtca
     2341 gggagtaaac gagtatgacg gaactggaag ggcatttgct gaacgcctta gagcatttgc
     2401 aacaggacta tatgcggcgg ctgaacgagt gggagagcgc cttcgcggaa ttgcagaaga
     2461 tgcacgaggt tacgcaacgg aacaacgcga tactgaacga gcgcgtcgtg atattgagtc
     2521 agcaggtgca gagattagcc gggcaagtgg atcgcttgag tcggttattt atcgcgaaca
     2581 acagctaagg gatgaacagg agcgtgcccg gtacagacat gaggtacagg aacgcgcggc
     2641 acgggttcgg agtgggccat caatggagat gtgaccgggg aagtgacgaa atcttgccat
     2701 tttgaccagt tcgacggctg gggcgagcga aacaaatcgt gtgccgtatt tgtgcatagc
     2761 tatgcaacat cctgaaaacg catttcacgc gtttttgggg attcagccag gggaaaacat
     2821 ggttttttta ctttttgagc gtaaagacgt gaaaaatctc gttattgcac ttgcgatctt
     2881 tcgtcggcgg gcgtagaacg aaaacagctc gccaggaagg cgagctgttt cgggttcatt
     2941 gaggtctctg acctcctcaa tgttcctgtg gaaactgttg agatccacaa cagaaaccag
     3001 ttcattcagt ttgcatgagc cttctgtatt cttcaagaat ttttcaacag cacagtctcc
     3061 caggaacccc gaaaaaaacc tgtttttgca gatacttgcg tatttgcgag aatcgtttgc
     3121 ggttggggga gctgtgacga cggcgaccgc acgcgtgaga gttccgctac cggcgcagag
     3181 agtttcatcg acagcggaca cctgatgagt tgccacaaaa accgtatgta gcgcggctag
     3241 attggttgag ttagaccttg gcggcagttc ccggtatgtg gtggcgtgac gggtgagatg
     3301 gtgcggcgaa gacgcatacg tcacgcaggc gcgggttctt ccactgacgc gccccgtgat
     3361 cgatggcctt gg
//
