LOCUS       NZ_CP060080             1887 bp    DNA     circular CON 14-JUN-2023
DEFINITION  Escherichia coli strain G3/10 plasmid unnamed1, complete sequence.
ACCESSION   NZ_CP060080
VERSION     NZ_CP060080.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15693146
            Assembly: GCF_014295275.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1887)
  AUTHORS   Jenjaroenpun,P., Wongsurawat,T., Khan,N., Wassenaar,T.M.,
            Nookaew,I., Ussery,D.W. and Zimmerman,K.
  TITLE     Whole genome sequencing of five probiotic Escherichia coli strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1887)
  AUTHORS   Jenjaroenpun,P., Wongsurawat,T., Khan,N., Wassenaar,T.M.,
            Nookaew,I., Ussery,D.W. and Zimmerman,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2020) Biomedical Informatics, University of
            Arkansas for Medical Sciences, 4301 W Markham St, Little Rock, AR
            72205, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: JAN-2020
            Assembly Method                   :: Unicycler v. 0.4.8
            Assembly Name                     :: UAMS_Ecol_g310
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 181x
            Sequencing Technology             :: Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/14/2023 05:39:25
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,044
            CDSs (total)                      :: 4,926
            Genes (coding)                    :: 4,666
            CDSs (with protein)               :: 4,666
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 260
            CDSs (without protein)            :: 260
            Pseudo Genes (ambiguous residues) :: 0 of 260
            Pseudo Genes (frameshifted)       :: 80 of 260
            Pseudo Genes (incomplete)         :: 168 of 260
            Pseudo Genes (internal stop)      :: 50 of 260
            Pseudo Genes (multiple problems)  :: 37 of 260
            Pseudo Genes (short protein)      :: 3 of 260
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP060080.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="G3/10"
                     /isolation_source="feces from healthy individual"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="unnamed1"
                     /geo_loc_name="Germany"
                     /collection_date="1954"
     gene            complement(218..454)
                     /locus_tag="H4P47_RS24845"
                     /old_locus_tag="H4P47_24845"
     CDS             complement(218..454)
                     /locus_tag="H4P47_RS24845"
                     /old_locus_tag="H4P47_24845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016230891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016230891.1"
                     /translation="MTRLTNLTPAEKKFIDDAIAAAERAAGKKLNQPNRHIVLNRARAQ
                     IESQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     Typing          774..1260
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.102"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 caccaaaacg ctctatttac cataacatcc gttgcccgca ccccctgaga ggccctcagc
       61 gcaattctgg cgcatcagag ccgtttccgg cacatttcct cacccgcatc ccggaaaaac
      121 gcccctgatg atttctgcgc gactgcatgg ctatgcacgc gggtgaatcg caggtgattt
      181 cgcagcgtca gcaccactaa accgccaaaa tccgcaatca gcggcgcggc gcgcgcggac
      241 gtgaccaggc aaaatcggac tgctgccgct catcctcacg taatgcacgc tggcggtcgg
      301 cgtaacgctg cgactcaatc tgcgcacgcg ctctgttcag gacgatgtgc cggttaggct
      361 gattgagctt cttcccggcc gcacgttcgg cagcggctat agcgtcgtcg ataaactttt
      421 tctcagcggg ggtcaggttt gtcagtctcg tcatgtttat ctccgtatga gaatagtccc
      481 tgcagtctgc cagacacagt aggaacgatg aagcgtaagc gacggtgaaa ggcagtcaga
      541 aacggtgaac gggagcggat tttaatccgg tgccgtgagg cgttggacaa gccgcaggcg
      601 cgtcagtggt tttagcgggt ttcggggcgc agccctgaac cagtcacata gcgctagcgg
      661 agtgtatact ggcttaaaat gtaacatcgc agaaacatca ggcatagctg ccacataaag
      721 caggtgaaaa atgagattcg tatgcgtcag cagaagatgc actgccggag aaatgccgct
      781 tcctcgctca ctgactcgct ccgctcggtc gttcggctgc ggcgagcggt gcaggcttac
      841 taatggggcg gaaatttcct agtggatgcc aggaagaaac ttaacaggga aaccataagg
      901 ccgcggcaaa gccgtttttc cataggctcc gcccccctga caagcatcac gaaatctgac
      961 gctcaaatca gtggtggcga aacccgacag gacttaaaga taccaggcgt ttccccctgg
     1021 tggctccctc gtgcgctctc ctgttcctgc ctttcggttt accggtgtca ttccgctgtt
     1081 atggccgcgg tctctcattc cacgcctgac actcagttcc gggaaggcag ttcgctccaa
     1141 gctggactgt atgcacgaac cccccgttca gtccgactgc tgcgcctgtt ccggtaacta
     1201 tcgacttgag tccaacccgg aaagacatgc aaaagcgcca ctggcagcag ccactggtaa
     1261 ctgatttaga ggagttagtc ttgaagttat gtgccagtta aggctaaact gaaaggacag
     1321 atttggttac tgcgctcctc ttaagccagt taccgcggtt caaagagttg ctgctctgag
     1381 aaccttcgaa aaaccgcctt gctgggcggt tttttcgttt ccagagcaag agattacgac
     1441 gcaacgaaaa ggatctcaag aagatcatct gtgatattca acagatacct atctctcgat
     1501 tcataaaaaa agccacataa gtggcttttt ttatgggtgg tacatcaatt taaaagactg
     1561 tgtactacaa agatcagaca cagaatgatg gtcagcacct ggcttataag tggtgcttta
     1621 ataaacgccg taagcagttc ggccatacgt ttattccttc atattgatag aaaggaatac
     1681 cggctcaatt gacgtagatt caccccaggg gtaaaattac tttgtgataa gtaacgacaa
     1741 cgtgagcttc ggtacatgtt ttcgggtagc agtcagcgat tcgcagtcgc tgactgaggc
     1801 gagaaaaaga atccttacgg attctttttt tttgcccttt catccttctg taaaattata
     1861 tcacagctaa agatgtggcg ggcgagt
//
