LOCUS       NZ_CP059720             1506 bp    DNA     circular CON 14-JUN-2023
DEFINITION  Escherichia coli strain BUCT2930 plasmid p6buct2930, complete
            sequence.
ACCESSION   NZ_CP059720
VERSION     NZ_CP059720.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15595090
            Assembly: GCF_014117405.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Liu,Z., Liu,Y., Liu,W., An,X., Zhao,Y., Wang,L., Tong,Y., Hu,Y.,
            Lin,W., Fan,H. and Song,L.
  TITLE     Whole genome sequencing of a strain of E. coli causing diarrhea in
            Paguma larvata
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1506)
  AUTHORS   Liu,Z., Liu,Y., Liu,W., An,X., Zhao,Y., Wang,L., Tong,Y., Hu,Y.,
            Lin,W., Fan,H. and Song,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JUL-2020) College of life science and technology,
            Beijing University of Chemical Technology, 98 Zizhuyuan Road,
            Haidian District, Beijing, Beijing 100048, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. 3.13; Canu v. 2.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Reference-guided Assembly         :: SPAdes
            Genome Coverage                   :: 200.0x
            Sequencing Technology :: Oxford Nanopore MiniION; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/14/2023 05:40:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,897
            CDSs (total)                      :: 4,778
            Genes (coding)                    :: 4,578
            CDSs (with protein)               :: 4,578
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 200
            CDSs (without protein)            :: 200
            Pseudo Genes (ambiguous residues) :: 0 of 200
            Pseudo Genes (frameshifted)       :: 70 of 200
            Pseudo Genes (incomplete)         :: 131 of 200
            Pseudo Genes (internal stop)      :: 36 of 200
            Pseudo Genes (multiple problems)  :: 36 of 200
            Pseudo Genes (short protein)      :: 4 of 200
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP059720.1.
            Bacteria and source DNA available from Beijing University of
            Chemical Technology, 98 Zizhuyuan Road, Haidian District, Beijing.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="BUCT2930"
                     /isolation_source="feces"
                     /host="Paguma larvata"
                     /db_xref="taxon:562"
                     /plasmid="p6buct2930"
                     /geo_loc_name="China:GuangXi"
                     /collection_date="2020-02"
     gene            complement(join(1421..1506,1..355))
                     /locus_tag="H1R14_RS00485"
                     /old_locus_tag="H1R14_00485"
     CDS             complement(join(1421..1506,1..355))
                     /locus_tag="H1R14_RS00485"
                     /old_locus_tag="H1R14_00485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000031238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000031238.1"
                     /translation="MSKDVERITQINDQGEIIGGFVAVIRPKQKSAFQRHFTMNQDALR
                     ILAKELTGEQFKVLMLMLADLDYENFIQIAQADIAETLGMQKTNVSRAVRALLDVGVIF
                     EGPKVGRSKTYRLNEQFGWKGTVTNHKKALKNGFSVIQGGRI"
                     /name="hypothetical protein"
     Typing          880..1136
                     /name="Col(MG828)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.186"
                     /coverage="98.0"
                     /evalue="3.06e-107"
ORIGIN
        1 cattcagccg gtatgttttt gatctgccaa ctttaggtcc ctcaaagatc accccaacat
       61 ccagtagcgc gcgaacggcg cgactaacat tcgttttctg catccctaaa gtttcagcaa
      121 tatctgcttg ggcgatctga atgaagtttt cgtaatccag atctgcaagc atcagcatta
      181 agaccttgaa ttgctccccg gttaattcct tagccaagat ccgtaatgcg tcttgattca
      241 tggtgaaatg cctctgaaat gctgattttt gtttagggcg gataacggca acgaagccgc
      301 cgataatctc accctggtca tttatctgag tgattctctc gacatcctta ctcatctttg
      361 aaccctattt gagttatcaa taatgataac agtgttatca ttattgataa ctatgtcaac
      421 tgtaaccctt agattttgtt aatgttttta ttctcctttc tgtatcttta tattaggcgt
      481 ctaacgcatt gattccatta gatatttatc ctagctactc tttggggtgt cggggcgaag
      541 ccctgaccca gtcacgtaac gatagcggag tgtatactgg cttaatcctc tgcaagcctc
      601 gtcagccgtg atttttgcca gatttcgagg ttttcacgtt caacagctcc tgcacgtttt
      661 ttgccgtccg ttcaccgtta aactccgcag aaatcgggac aggatgtgca aatgtaatac
      721 cgtcacccgc gacgatattc cgtttgccat ctggtcaggg cttcaccccg acaccccgca
      781 tcagtgcgta cgtgctcaat gtggtttccg gttctcttcc gcttcctcgc ccactcgctc
      841 actaacgttc ggtcgctggg gctgcggcga gcggtgccac ctctcgcatg ttatcggtga
      901 ttccgctgtt gttctttcgg ggatgagtcg ccagatagct cttcaaacgc tctcagaagc
      961 tctcaggcgc acgaaacggg ttttaaatgc ccgtcagggc atggaaggcg cgaaaaacgc
     1021 ttacagaggg tttcaggagg tcaggcgcgc cgatacccct aaccaggggc tttcaggtcg
     1081 ccaggaaccg cgtcagcccc ctgcaaagcc catttgcacg gcactggcag ctattcagct
     1141 ggttggtggt cgtagaccgt cgatgttaca gcgatggggg tctggggttc tccccagacg
     1201 gtttccggtt gcgctcaagg cgctgccgga accgtggcag ctcagacgtt ttggagatta
     1261 tcgggcaaag gttgcgaatg acgtcaatga cgtcattttg cggcgtttgc cctatcctgc
     1321 atcgcatcga actgacatgc ggcaaaagag caatgcagga tagacaatca tggtcaaaac
     1381 gttaacacgt agccctgatt gtccgcctgc cgctggctct ttaaatccgg ccgccctgaa
     1441 tgacactaaa gccgtttttg agtgcctttt tgtggttggt tacggtgcct ttccaaccaa
     1501 attgtt
//
