LOCUS       NZ_CP059390             4721 bp    DNA     circular CON 10-JAN-2024
DEFINITION  Acinetobacter baumannii strain 36-1512 plasmid p4.36-1512, complete
            sequence.
ACCESSION   NZ_CP059390
VERSION     NZ_CP059390.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15541804
            Assembly: GCF_013787185.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 4721)
  AUTHORS   Shneider,M., Timoshina,O.Y., Evseev,P.V., Mikhailova,Y.V.,
            Shelenkov,A., Yanushevich,Y.G., Shagin,D.A., Edelstein,M.V. and
            Miroshnikov,K.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JUL-2020) Laboratory of Molecular Biongineering, IBCH
            RAN, Miklukho-Maklay str 16/10, Moscow 117997, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2020
            Assembly Method :: SPAdes v. 3.13; Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 160.0x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/10/2024 01:14:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,946
            CDSs (total)                      :: 3,847
            Genes (coding)                    :: 3,635
            CDSs (with protein)               :: 3,635
            Genes (RNA)                       :: 99
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 212
            CDSs (without protein)            :: 212
            Pseudo Genes (ambiguous residues) :: 0 of 212
            Pseudo Genes (frameshifted)       :: 45 of 212
            Pseudo Genes (incomplete)         :: 164 of 212
            Pseudo Genes (internal stop)      :: 28 of 212
            Pseudo Genes (multiple problems)  :: 22 of 212
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP059390.1.
            Bacteria and source DNA available from Mikhail V Edelstein
            Institute of Antimicrobial Chemotherapy, Smolensk State Medical
            University, Smolensk, Russia.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4721
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="36-1512"
                     /isolation_source="respiratory tract"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="p4.36-1512"
                     /geo_loc_name="Russia: Moscow"
                     /collection_date="2013-01-01"
     gene            complement(43..1959)
                     /locus_tag="H0S62_RS19640"
                     /old_locus_tag="H0S62_19640"
     CDS             complement(43..1959)
                     /locus_tag="H0S62_RS19640"
                     /old_locus_tag="H0S62_19640"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_045126957.1"
                     /translation="MIVQFFRYGNGLSKGPLDYLLGKDRDRDYAKVLQGDVSEVSGLID
                     TSPFAKKYTSGCLSFYEHDLSDQDKQQIMQNFEQALFPGMDQSQYRVLWIEHQDKKNEE
                     TGKRRLELNFLIPNIEILTGQRLQPYFDRADRSRVDLFKKITNYEYQLHDADDPLYQQD
                     IKHAKNLPKAVNEIKETLNILATKAVENGLITDRQSMKTWLLDLGLEISRETKKSLSIK
                     NPNNDDPNARPIKLKGAIYEQDFRLTEESERLTIAASERYRREAEQRNQSNIQRYAEYS
                     AKRSTELEQQYRQHQNRYTAETERSNERDITADRPDYSSNQEATATGHDSPIARTTTAD
                     QTATSELAAVERLEPRNSPSSQIKENPYYIEYSLDFTGMYNAYQQYLSGVRQQEQIQRH
                     HSNGEQSQLFKITGREHDNNNVRGETVRGVRPDSERELRIGQWNETAWNSKGGTLNESR
                     STVIADYRAATAAAQRATEAARASIAAHSGTEQNHRRIRELQQQTGEALQPVERERKRA
                     DQYHQETTESEVIRGFIARLGEQLKTAITEPFRAISDWVKSKERDQRNIANDDLYRNRE
                     ADSTIDGTASKETRLSATVSRTIRGFDQENIFKALDELDRRRELQIVQERKNDRGYDSP
                     SPF"
                     /name="hypothetical protein"
     gene            complement(1956..2300)
                     /gene="mobC"
                     /locus_tag="H0S62_RS19645"
                     /old_locus_tag="H0S62_19645"
     CDS             complement(1956..2300)
                     /gene="mobC"
                     /locus_tag="H0S62_RS19645"
                     /old_locus_tag="H0S62_19645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017482451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="WP_004993722.1"
                     /translation="MTAIKRNKVYKVRFSDAEVQKIKDANILNIAKYLRDTSLSQIDAS
                     QVNAKKKNLENHYTKLDREFLLELSRIGGNINQIAKAINTDLASSRPLDAARLLHLLIG
                     IDQTLKELKK"
                     /name="mobC"
     gene            complement(2682..2903)
                     /locus_tag="H0S62_RS19650"
                     /old_locus_tag="H0S62_19650"
     CDS             complement(2682..2903)
                     /locus_tag="H0S62_RS19650"
                     /old_locus_tag="H0S62_19650"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004993714.1"
                     /translation="MSELDFFCYSLYVQKERKYKSNWAFVIFKVRYGKWISKSLRAQAI
                     AKNPTKEYLDWLYNYFEQNLDIVKAYNS"
                     /name="hypothetical protein"
     gene            complement(2900..3850)
                     /locus_tag="H0S62_RS19655"
                     /old_locus_tag="H0S62_19655"
     CDS             complement(2900..3850)
                     /locus_tag="H0S62_RS19655"
                     /old_locus_tag="H0S62_19655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004993712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_032032193.1"
                     /translation="MNNAQLTDFFTNLAHKPYCADELLYGLKIRPKKTAINMQYIQGNQ
                     PCMLHYFFFDIDRSDAAMAWHEENLPVPYWTAQTQKNGHAHLCYKLEIPLCTSEFGSQK
                     SIAYASKVQAALANKLGADVGYSHLITKNPFHKDWRVTFWSEQAYTLDYLADFVELPKK
                     LSKKQEVLGLGRNCTLFENARKWAYKAVRDYFHHYSSLEWDKAVLAHLEALNREFEVPL
                     PYSEVKATAKSIAKYCWNKFSYAGFSEWQSKNAERANAKGACSLGGKARSQQFNNLRQQ
                     ALDLHIEGVNNTKIAEYLNVSRKTITRWLNQVVIQ"
                     /name="replication initiation protein"
     gene            complement(4112..4453)
                     /gene="mazF"
                     /locus_tag="H0S62_RS19660"
                     /old_locus_tag="H0S62_19660"
     CDS             complement(4112..4453)
                     /gene="mazF"
                     /locus_tag="H0S62_RS19660"
                     /old_locus_tag="H0S62_19660"
                     /EC_number="3.1.27.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005402007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endoribonuclease MazF"
                     /protein_id="WP_005000144.1"
                     /translation="MPQNYVPEEGDIIWINFNPQSGHEQAGHRPALVLSPSSYNKATSL
                     LVCCPMTTQIKGYPFEVKIVGNPENVALSDQVKSLDWVARSATKKGQAKSEELEEVRQK
                     IAALLKIST"
                     /name="mazF"
     gene            complement(4453..4692)
                     /locus_tag="H0S62_RS19665"
                     /old_locus_tag="H0S62_19665"
     CDS             complement(4453..4692)
                     /locus_tag="H0S62_RS19665"
                     /old_locus_tag="H0S62_19665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004918185.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="WP_005000146.1"
                     /translation="MELAIKKWGNSAAVRLPSILLESLNLKLDSRVEVFTQDEAIVIKP
                     IKSKISLEQLLADITSDNLHCEVDTGHAVGKEIY"
                     /name="AbrB/MazE/SpoVT family DNA-binding domain-containing
                     protein"
     Typing          complement(47..1959)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="87.011"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atacaatacc ctagcaagat ttttgtgtca ataacgcgag cattaaaatg gacttggtga
       61 atcataacct cgatcatttt tacgttcttg cactatttgc aactctctac gtctgtccaa
      121 ctcatctaaa gccttgaaga tattttcttg atcaaaacct cgaatcgttc gtgatactgt
      181 tgcactgagt ctagtttctt ttgaagctgt tccgtcaatg gtgctgtctg cttctctatt
      241 tctgtataga tcatcgttgg caatatttcg ttgatctcgt tctttagatt taacccagtc
      301 actaattgct ctaaatggct ctgtaatcgc tgttttaagc tgttctccaa gccttgcaat
      361 aaatcctctg ataacttcgg attctgtagt ttcttgatga tattgatcag ctcgttttct
      421 ttctcgttca actggttgca gtgcttcacc agtttgttgt tgtagttctc taattcgtct
      481 atggttctgt tctgtgcctg aatgagctgc aatgcttgct cttgctgctt ctgttgctct
      541 ctgagctgct gctgttgctg ctcgataatc tgcaataact gtgcttcgag attcatttaa
      601 cgtacctcct ttactattcc aagcggtctc gttccattgt ccaatgcgta gttctctttc
      661 actgtcgggt ctaactccac gcacagtttc cccccgcacg ttgttgttat catgctcccg
      721 ccctgtgatc ttaaataatt gactttgttc tccattgctg tgatgtcgtt gtatttgctc
      781 ttgctgacgt accccagaca aatactgctg ataagcgtta tacatgccag tgaaatcaag
      841 gctatattcg atgtaataag ggttttcttt aatttggctg cttgggctgt ttcttggctc
      901 aagccgttca actgctgcaa gttcgcttgt agctgtttga tctgctgttg ttgttcttgc
      961 aatagggctg tcatgccctg ttgctgttgc ttcttggttt gagctgtagt ctggtcgatc
     1021 tgctgtaata tctcgttcgt tgcttcgctc tgtttctgct gtatatcggt tttggtgctg
     1081 tcgatactgc tgctcaagct ctgtgcttcg cttcgcactg tattccgcat atctttgaat
     1141 atttgactga tttcgctgtt cagcttctcg tctatatcgc tctgatgctg caatagtaag
     1201 tcgttcgctt tcttctgtaa gtctaaaatc ctgctcatag attgcacctt ttaacttaat
     1261 tggtctggcg tttgggtcat cattatttgg atttttaata gataggcttt tttttgtttc
     1321 tctgctgatt tcaagaccga gatccaatag ccacgttttc atgctttgac gatctgtaat
     1381 taatccattc tctacagctt tcgtagctaa aatattgaga gtttccttaa tctcattaac
     1441 agctttaggt aggtttttgg cgtgtttaat gtcttgttga tacaacgggt catctgcatc
     1501 atgcagttga tattcatagt ttgtaatctt cttaaataga tcaactctag aacgatcagc
     1561 tcggtcaaaa tatggctgta aacgttgccc tgtaagaatt tcaatattgg gaattagaaa
     1621 attaagctct aatcttcgct tccccgtctc ctcgtttttc ttgtcttgat gctcaatcca
     1681 caaaacacgg tactggctct gatccatgcc agggaataag gcttgctcaa aattttgcat
     1741 aatctgctgt ttatcttgat cacttaaatc atgctcgtaa aaagacaaac aacctgacgt
     1801 atattttttg gcaaaaggtg atgtatcaat taaccctgat acttcggaaa catcaccctg
     1861 caaaactttt gcatagtctc tatcacggtc tttaccaagc aaataatcta gtggcccttt
     1921 gcttaaacca ttgccgtacc tgaagaactg aacaatcatt ttttcaattc ctttaaggtc
     1981 tgatcaatcc ctattaacag gtgcaaaagc cttgcagcat caaggggacg actgcttgca
     2041 agatcggtat ttattgcctt tgcaatctga ttgatgttgc ccccgattcg ggatagctca
     2101 agtaaaaatt cacgatctaa ttttgtgtag tgattttcca aattcttttt tttggcgttg
     2161 acttgactgg catcaatttg agaaagcgaa gtatcccgca aatatttagc aatatttagg
     2221 atgttggcat ctttgatttt ctgtacctct gcatcagaaa atcggacttt gtaaacctta
     2281 ttacgtttga tcgctgtcat gcttttgcct ttgcttttgg gggtttcggg ggcttgcccc
     2341 tgaacaaggt catggaactc tgtagcgtag cggaggggtc tccatgtatc cttgcgttct
     2401 catacggtga cagaccccta gacgtatatt ttattgagca gggcatggca aggttatgga
     2461 caatcgcaag cgaacgcctc gactaatctg tgaataaaca ttatgcacaa ctccgcataa
     2521 ctcttctagt tatacgttga gttgcacaca agtttattac acaggtcgag actttgccca
     2581 cagccttgct catgccctta aataataatt tttaaaaatg aaatgggaaa aaagcaccca
     2641 aggggctgat atctgatatg gcggcactgt cccacccctt tttatgaatt atatgccttc
     2701 acaatatcta aattttgttc aaaatagtta tatagccagt ctaaatattc ttttgttgga
     2761 ttctttgcta ttgcttgtgc tctaagactt ttagatatcc atttaccata gcgaacctta
     2821 aaaataacaa atgcccagtt cgatttatat ttacgttctt tttgaacata tagtgaataa
     2881 caaaagaaat ctaactcgct cattgaatta ctacctgatt aagccaacga gtaatcgtct
     2941 tacggcttac atttaaatat tcagcaattt tagtattgtt aacaccctca atatgcaaat
     3001 ctaaggcttg ttgtcttaaa ttattgaatt gttgtgagcg tgcttttcct cccaaagaac
     3061 aagccccttt agcattagca cgttcggcat tcttagactg ccactcacta aatccagcat
     3121 acgaaaactt attccaacaa tatttagcaa tactctttgc tgtagctttt acttcactat
     3181 atggcaaagg tacttcaaat tctcgattta atgcctctag atgcgctaaa acagctttgt
     3241 cccactctag actactataa tggtgaaagt agtctctaac agccttatat gcccatttac
     3301 gagcattctc aaataaggtg cagttacgac caagccctaa aacttcctgt tttttgctta
     3361 atttctttgg taactctaca aaatcggcta aataatcgag cgtatacgct tgttcactcc
     3421 aaaaagtgac acgccaatct ttatgaaatg gattcttcgt aatgagatga ctatagccaa
     3481 cgtctgcacc aagtttgttg gcaagcgctg cttgtacctt tgaagcatag gctattgatt
     3541 tttgactgcc aaactcactg gtacacaaag gaatttctaa tttataacag agatgagcat
     3601 gaccgttttt ctgtgtttgt gctgtccaat aaggcactgg taaattttct tcatgccatg
     3661 ccatggctgc atctgaacgg tctatgtcaa aaaagaagta atgaagcata caaggctgat
     3721 tgccctgtat gtattgcatg ttgattgccg tttttttcgg tcttattttt aagccataca
     3781 gtaactcatc tgcacagtat ggtttatgag caagattagt aaaaaaatcc gttaattgag
     3841 cattattcat attatgcaac gttctaaagg ttgcaaatgc tcaaaacatc agtaaaataa
     3901 caagtaacta atttgcgttt aatgatgctt taagtatttg ttaaacaatg agaaaaaagt
     3961 gagccggcaa gcttgctttt ttttcgccta aaagaaaatt taacacactt cattaaactt
     4021 tccaacttat tgatttatat aggctattgt atcagtaaat aatcttaaaa agatttatgt
     4081 attaccttac cctttgattt catagatgat atcaagttga tattttcagt aaggctgcaa
     4141 ttttttgtcg cacttcctca agttcttcag atttagcttg tccctttttc gttgctgatc
     4201 gagcgaccca atctaaactt tttacttgat cagatagtgc tacattttca ggatttccta
     4261 caattttaac ttcgaaagga taccctttta tctgcgttgt cattggacag caaactagta
     4321 ggcttgtggc tttattataa gatgaaggac ttaaaactaa ggcaggtcta tgtcctgcct
     4381 gttcatgccc actctgtgga ttaaaattaa tccagataat atcgccttct tctggtacat
     4441 aattttgagg cattaataga tttccttacc tacagcatgt ccagtatcca cttcacaatg
     4501 caaattatca gatgttatat ctgctaaaag ctgctctaaa gatatttttg atttaattgg
     4561 cttgataacg atcgcttcat cttgagtaaa tacctcaaca cggctatcca atttaagatt
     4621 aaggctttct aataaaatgg atggtaggcg gacagcagca ctattgcccc actttttaat
     4681 agctagttcc ataacagcaa cccctagtat ctacattgta g
//
