LOCUS       NZ_CP058808             3752 bp    DNA     circular CON 24-AUG-2023
DEFINITION  Salmonella enterica strain SRC27 plasmid pSRC27-Col156, complete
            sequence.
ACCESSION   NZ_CP058808
VERSION     NZ_CP058808.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15471789
            Assembly: GCF_013415925.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3752)
  AUTHORS   Harmer,C.J.
  TITLE     Epidemic HI1 and I1 resistance plasmids from Salmonella enterica
            serovar Typhimurium strain SRC27
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3752)
  AUTHORS   Harmer,C.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-JUL-2020) School of Life and Environmental Sciences,
            The University of Sydney, Maze Cres, The University of Sydney, NSW
            2006, Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 33.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MiniION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 08/24/2023 06:29:44
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,179
            CDSs (total)                      :: 5,054
            Genes (coding)                    :: 4,899
            CDSs (with protein)               :: 4,899
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 155
            CDSs (without protein)            :: 155
            Pseudo Genes (ambiguous residues) :: 0 of 155
            Pseudo Genes (frameshifted)       :: 77 of 155
            Pseudo Genes (incomplete)         :: 87 of 155
            Pseudo Genes (internal stop)      :: 29 of 155
            Pseudo Genes (multiple problems)  :: 34 of 155
            Pseudo Genes (short protein)      :: 1 of 155
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP058808.1.
            Bacteria and source DNA available from Dr Christopher Harmer.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3752
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SRC27"
                     /host="Horse"
                     /db_xref="taxon:28901"
                     /plasmid="pSRC27-Col156"
                     /geo_loc_name="Australia: Melbourne"
                     /collection_date="1999"
     gene            complement(join(3595..3752,1..289))
                     /locus_tag="HZY55_RS23505"
                     /old_locus_tag="HZY55_23505"
     CDS             complement(join(3595..3752,1..289))
                     /locus_tag="HZY55_RS23505"
                     /old_locus_tag="HZY55_23505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000184721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WP_000184724.1"
                     /translation="MTNREEWLSAKIAYINGLKSPSEQQRLLVLLSEKKNRTTTDEKTL
                     SALIRAEKTAEKAAAAKARVTAIIAAERKAAARAERKARDHELYKAAGLMIVAGLVDSK
                     TGKPKFSAAELVGALAGIAELPRNHPKWQEWERRGKELLTKDSA"
                     /name="conjugal transfer protein TraD"
     gene            461..2011
                     /locus_tag="HZY55_RS23510"
                     /old_locus_tag="HZY55_23510"
     CDS             461..2011
                     /locus_tag="HZY55_RS23510"
                     /old_locus_tag="HZY55_23510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001624483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_172658014.1"
                     /translation="MASYHCTVKAGAKGSALKHADYISRSGEYKSYKSREDLEFSSSGN
                     MPSWAKKNPAELWKAADEFERKNGTAYREIEIALPRELTREQRIELVEDFVQKELGDRH
                     AYQYAIHNPPGAIDGKEQPHAHIMFCERINDGIERDPQQFFKRANSKSPERGGAKKASI
                     PQTAGERKAALVALRSRWADVQNEHLARYGHESRVDHRSLKEQGINRTPEVHLGPVQAA
                     SLNGEQIVAIQERRNAERELKTARDAANAIQQEQEQKQKIKAVEPVRSARSPELLLQYR
                     KVMKTVIQGEERLARLGDANPNALKEHKLLQNAKAKKDSLSEWSRRIYEGARYLDKLGR
                     NVVSAQRELRELQEQRNALNGIRGLFRGADKREIDARILEQKSVLETAEHERNEFRNKL
                     QQAESEWDKENAAFKRTEGYKYVGDLDRYREREILAAASLENTRQKVAEEVSVARSQML
                     SLEPELSISGDEKAQMRHELLAEMAQERQQQEEKALRIQRSWAREASRSNERDQDMER"
                     /name="MobA/MobL family protein"
     gene            2466..3401
                     /locus_tag="HZY55_RS23515"
                     /old_locus_tag="HZY55_23515"
     CDS             2466..3401
                     /locus_tag="HZY55_RS23515"
                     /old_locus_tag="HZY55_23515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009440807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_172658013.1"
                     /translation="MSAALQYFEENLPRRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASVKA
                     LKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREEAYTLDELADYLDLSASE
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLEAVIQRVEMYNASLPVPLSL
                     AECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAKRGRKGGIAKGEAYDDKRFMAL
                     CMLENGYSQKAIAAMLNVHRNTIRNWAMHK"
                     /name="replication initiation protein"
     Typing          2467..3353
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.973"
                     /coverage="95.0"
                     /evalue="0.0"
     Typing          462..2008
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.822"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 caatcatgag gcctgcggcc ttgtagagtt catgatcccg cgcctttcgt tccgcccttg
       61 cggctgcctt ccgttctgcc gctatgattg ctgttaccct ggcttttgct gcggctgctt
      121 tctctgcggt tttttctgcc cgtatcagtg cggacaacgt tttttcatcc gtcgttgttc
      181 ggtttttttt ctctgacagt aacacaagta atctctgctg ctctgacggt gatttcagtc
      241 cgttgatgta ggcaattttt gcacttaacc actcttcacg atttgtcatt cttacctctg
      301 cacttttgcc gttaatgtga gttgttattg tgcataatat caccttgtct gcctgcgtgt
      361 gagaccgtaa aatcatccct gattaattca gggatgcgca cttagtagtt tctctccttc
      421 gtcgagaaac tgtgcgctcc tgcggagggc taaaaggcag atggcaagct accattgcac
      481 cgtcaaagct ggagcaaaag gcagtgcctt aaaacatgct gattacattt ccagatccgg
      541 cgaatataag agctacaaat cgcgggagga tctggaattt tcgtcatccg gtaacatgcc
      601 atcatgggcg aagaaaaatc ccgcagagct atggaaagcc gcagatgaat ttgaacgaaa
      661 aaacgggact gcataccgtg aaattgagat cgcgttaccg cgtgaactga cacgcgaaca
      721 acggatagaa cttgttgaag atttcgtgca aaaggaactt ggcgatcgcc atgcctacca
      781 gtacgcgatc cacaatccgc caggtgcaat cgacggaaag gaacagccac acgcgcatat
      841 catgttttgc gagcggatta atgatggtat tgaacgcgat ccgcagcaat tttttaaacg
      901 tgccaacagc aaatcgccag aacggggagg cgcaaaaaaa gcgagtattc cccagacagc
      961 cggagagcga aaagccgccc ttgttgcgct gcgttcccgc tgggctgatg tgcagaatga
     1021 gcaccttgcg cgatacggtc acgagtcgcg cgtagatcat cgttctctga aagaacaggg
     1081 tatcaatcgc acgccggaag ttcatcttgg ccccgttcag gccgccagtc tcaatggtga
     1141 gcagattgtt gcaatccagg aacggaggaa tgctgagcgg gaacttaaga ccgccagaga
     1201 tgccgcaaat gccattcagc aggaacagga gcaaaagcaa aaaatcaagg ctgttgagcc
     1261 tgttcgttca gcccgttcac cggagttatt gcttcagtac cgcaaggtta tgaaaacggt
     1321 cattcaggga gaggaaaggc ttgctcgttt aggggatgcc aatcccaatg cgctcaaaga
     1381 acataagctg cttcagaatg cgaaagcaaa aaaagactct ctttccgaat ggagcaggcg
     1441 aatatatgaa ggggcacggt atttagacaa actggggcgt aatgtcgttt ccgcacaaag
     1501 ggagctgcgg gagctacagg aacaacgcaa tgctttgaat gggattcgtg gcctgtttcg
     1561 gggggctgac aaaagggaga ttgatgcgcg tattctggag caaaaaagtg tgctggaaac
     1621 cgctgaacat gaaaggaatg aattcaggaa caagctacag caagctgaat ccgagtggga
     1681 caaagaaaac gctgctttta agcgtaccga gggatataag tacgttgggg atctggatag
     1741 gtacagagaa cgtgagattc tggccgcggc atctttagag aataccaggc aaaaggttgc
     1801 tgaagaagta tccgttgccc gtagccagat gttatctctg gagcctgaac tcagtatatc
     1861 tggagatgaa aaagctcaaa tgcgacatga gttactggca gaaatggcgc aggaacggca
     1921 gcaacaggag gaaaaggcac tgcgtataca gcgatcctgg gccagggagg catcacgtag
     1981 taacgaacgt gatcaagata tggagcgttg aaaatgtagc aatatcggga ctgcgccccg
     2041 aaccccgcca acgtttcacg gaacgcgaaa aaattccgcg tcccgttcac cgttttctga
     2101 tgagaaagtt tgctgttttg acccgttcgc ccttctgaac gctcgaaaca gatcgcgcat
     2161 tgctttcgtg aatagttatg caggctcatg aaaacgattc tgacgcgttt ttctggcttt
     2221 gcctggtgtt tccttgtctt tttgtgtttt ttgcgccaga aagcgattga gggcgtttta
     2281 gcggtgcgta caacaggagt tatggtaaat ggatcgggtt tgcgggaaga ctcgacaggt
     2341 tttgtcgttg ggggtagtgt aagcgactga aaaacaaacg cccctgaaat tcgtgtctat
     2401 ccgccaagac tgtcacgaaa atacaggggc gatgtcggtc gataacctgg aaggaatcgt
     2461 aacacatgag cgccgcgctt caatacttcg aagaaaattt accccgccgt ccctatcaca
     2521 cggatgatct cgcttttggt cttcgcatct ccggcaaagg gcgtgcgctt cttgcgcggt
     2581 acatccagca gaaccagcct catgcgcagt tctggctggt ttttgacgtt gaccgcgagg
     2641 gggcagcgat tgactggagc gaccggaacg cccccgcgcc gaacatcacc gttaaaaatc
     2701 ctgtgaacgg acacgctcac ctgctctatg cactcaatat cgccgtgaga accgcgcctg
     2761 atgcgtcggt taaggcgctg aaatatgccg cagcggttga acgttcgctg tgtgagaaac
     2821 tttgtgcgga tgtgaactac agcggcctga tttgcaaaaa tccgttccac ctggaatggc
     2881 aggtgatgga gtggcgcgag gaagcctata ccctcgatga actggctgat tatctcgatt
     2941 tgagcgcctc agagcgtcgt agcatcgata aacattacgg gatggggcga aactgccacc
     3001 tgttcgaaat gacgcgcaaa tgggcttaca gggcgattcg tcagggctgg ccagcgttct
     3061 cacagtggct tgaagcggtg atccagcgtg tcgaaatgta caacgcatcg cttcccgttc
     3121 cgctttcact ggctgaatgt cgggctattg gcaagagcat tgcgaaatac acgcacagga
     3181 acttcacgcc ggaaactttc gcacagtatg tggctgatac gcacacacca gaaatacagg
     3241 ccaagagagg ccggaaaggt ggcatcgcta aaggcgaagc ctacgatgac aagcgtttca
     3301 tggcgctatg tatgctggag aatggatatt ctcagaaagc tattgcggcg atgctgaatg
     3361 tacatcgtaa tacgatccgt aattgggcaa tgcacaaata gcctatatca gataacagcg
     3421 ccttttcggc gtccttttga gccgcgggct ttccggtggt tttctcctgt cagcccagca
     3481 atggtgcggc ttaccgcatg attgaggtgg ttgtgctcgc cgcagtctca tgaccgagcg
     3541 tagcgagcga atgagcgagg aagcaccagg gaaccggaac gtgaacggag gctcttacgc
     3601 actgtctttg gttagtagct ccttcccgcg tctttcccat tcctgccatt ttggatggtt
     3661 gcgcggtagc tctgcgattc ctgcgagtgc gcctaccagt tcggcagcac taaactttgg
     3721 ttttccggtt ttgctgtcca ccagtcctgc ca
//
