LOCUS       NZ_CP058674             3371 bp    DNA     circular CON 03-JUN-2024
DEFINITION  Salmonella enterica strain MS114 plasmid pMS114_3, complete
            sequence.
ACCESSION   NZ_CP058674
VERSION     NZ_CP058674.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15350026
            Assembly: GCF_022870605.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3371)
  AUTHORS   Obe,T., Arick,M.A. II, Hsu,C.-Y., Li,T., Zhang,L. and Kiess,A.
  TITLE     Genome sequence of antimicrobial resistant Salmonella enterica
            strain MS114 isolated from poultry processing equipment after
            sanitization
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3371)
  AUTHORS   Obe,T., Arick,M.A. II, Hsu,C.-Y., Li,T., Zhang,L. and Kiess,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2020) Institute for Genomics, Biocomputing &
            Biotechnology, Mississippi State University, 650 Stone Blvd.,
            Mississippi State, MS 39759, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: JUN-2020
            Assembly Method                   :: Canu v. 1.9
            Assembly Name                     :: IGBB_S114_1.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 599.38x
            Sequencing Technology :: Illumina HiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022870605.1-RS_2024_06_02
            Annotation Date                   :: 06/02/2024 04:24:46
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,976
            CDSs (total)                      :: 4,857
            Genes (coding)                    :: 4,627
            CDSs (with protein)               :: 4,627
            Genes (RNA)                       :: 119
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 230
            CDSs (without protein)            :: 230
            Pseudo Genes (ambiguous residues) :: 0 of 230
            Pseudo Genes (frameshifted)       :: 104 of 230
            Pseudo Genes (incomplete)         :: 142 of 230
            Pseudo Genes (internal stop)      :: 38 of 230
            Pseudo Genes (multiple problems)  :: 46 of 230
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP058674.1.
            Bacteria and source DNA available from Aaron Kiess Lab, Mississippi
            State University.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3371
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="MS114"
                     /db_xref="taxon:28901"
                     /plasmid="pMS114_3"
                     /geo_loc_name="USA: Mississippi"
                     /lat_lon="31.7069282 N 89.1663322 W"
                     /collection_date="2018-08-14"
                     /collected_by="Mississippi State University"
     gene            complement(601..834)
                     /locus_tag="HWV51_RS24860"
     CDS             complement(601..834)
                     /locus_tag="HWV51_RS24860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137389.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHEVTQRNNA
                     ILNERVVILSQQVQRLAGQVDRLSRLFIANNS"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(841..1401)
                     /locus_tag="HWV51_RS24865"
     CDS             complement(841..1401)
                     /locus_tag="HWV51_RS24865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067487.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKKQLDTLSTTVSMQFSTTEAELSRQQKKLLWRVIKGRILFPALTA
                     LSVTGGIFLGCWGLMEWQESKIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            complement(<1433..2089)
                     /locus_tag="HWV51_RS24870"
                     /pseudo=""
     CDS             complement(<1433..2089)
                     /locus_tag="HWV51_RS24870"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2079..2402)
                     /locus_tag="HWV51_RS24875"
     CDS             complement(2079..2402)
                     /locus_tag="HWV51_RS24875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_024132211.1"
                     /translation="MLTIRVTDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGQWSSIDRVHVVAALMAIEGELRQLRQAVREQGVR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2466..2657
                     /locus_tag="HWV51_RS24880"
     CDS             2466..2657
                     /locus_tag="HWV51_RS24880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165979.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNDLDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          complement(2739..2819)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.805"
                     /coverage="93.0"
                     /evalue="8.68e-18"
     Typing          complement(519..2089)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.817"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgaaactct ctgcgccggt agcggaactc tcacgcgtgc ggtcgccgtc gtcacagctc
       61 ccccaaccgc aaacgattct cgcaaatacg caagtatctg caaaaacagg tttttttcgg
      121 ggttcctggg agactgtgct gttgaaaaat tcttgaagaa tacagaaggc tcatgcaaac
      181 tgaatgaact ggtttctgtt gtggatctca acagtttcca caggaacatt gaggaggtca
      241 gagacctcaa tgaacccgaa acagctcgcc ttcctggcga gctgttttcg ttctacgccc
      301 gccgacgaaa gatcgcaagt gcaataacga gatttttcac gtctttacgc tcaaaaagta
      361 aaaaaaccat gttttcccct ggctgaatcc ccaaaaacgc gtgaaatgcg ttttcaggat
      421 gttgcatagc tatgcacaaa tacggcacac gatttgtttc gctcgcccca gccgtcgaac
      481 tggtcaaaat ggcaagattt cgtcacttcc ccggtcacat ctccattgat ggcccactcc
      541 gaacccgtgc cgcgcgttcc tgtacctcat gtctgtaccg ggcacgctcc tgttcatccc
      601 ttagctgttg ttcgcgataa ataaccgact caagcgatcc acttgcccgg ctaatctctg
      661 cacctgctga ctcaatatca cgacgcgctc gttcagtatc gcgttgttcc gttgcgtaac
      721 ctcgtgcatc ttctgcaatt ccgcgaaggc gctctcccac tcgttcagcc gccgcatata
      781 gtcctgttgc aaatgctcta aggcgttcag caaatgccct tccagttccg tcatactcgt
      841 ttactccctg accagcctca cggcgttctt gtcgcccacc gtccaggtgt tttccccttt
      901 caccccgtcc ggcaacacca gaaatttccc gttctcgcca ttgacgaacg tcacccccca
      961 ggtttttgcc tcgagtttcg ccagcgtgtt ttcctgctct ctgatagtca ggatattttt
     1021 cgcaatcttg ctttcctgcc actccatcag cccccagcac cccaggaaaa tgccgcccgt
     1081 gacgctgagc gcggtcagcg ccggaaacag tatccgccct ttgatcaccc gccagagcag
     1141 ttttttctgc tgccgggaca gttcggcctc tgtggtgctg aactgcatgc tcacggtggt
     1201 gctcagcgta tccagttgct ttttcacgga tgttgtatgt tcgctgatag cgtctctgat
     1261 tttctgcctg tttaagctca atgccttgtc tacagactct tcgagcttcc tgaactcgct
     1321 gttcagcatg ttctcggtag aagcggctcg ctctttcagt ttcttctcga agtctgttcc
     1381 catttgtaaa agattgctca tacagcgccc cctttagcct gagattccgc cccccctccg
     1441 ggtcggcaat actgatgctg cttttggttg tcctcaccac ctcaaaacct gccgctgtaa
     1501 gcgcctctgt gacatcctga cgcgttttta ttgctccggc atggtaaaga gcctcaagac
     1561 cccgtgtaat cgcttctgcg gcctcctgtt tcgcttttgg cagattattt ggcgtgacaa
     1621 gcgtccgtct gttctccggt gcgttcgggt cacgcagccc gtaatgatga ttaaccagcg
     1681 tctgccaggc atttatcctc ggcctgtccg cgcggtcgta gtacggctgg aggcgcttac
     1741 cgctctgtag ctccatgttc gggatgacaa aattcagttc gagccgcccc ttatcctggt
     1801 gttccaccca gagaatgctg tactggtctt tttcgagacc gggcataaga acacgctcaa
     1861 agctcgtcat cactctttcg cgttcacccg gcggtaactc cttctccgcg aacgacagaa
     1921 cgcctgaagt gtatttcttc gagaatggcg tggaatcaat gagttcccgc acttcttccg
     1981 ggttaccccg gagcaccgtt gcgccttcgc ggttacgctc ccgccccagc aggtaatcga
     2041 ccgggccact tccaccgcct ttccccctgg catgaaattt aactatcatc ccgtaccccc
     2101 tgttccctga cagcctgccg caactggcgc aattcaccct cgatggccat cagtgcggcc
     2161 accacatgaa cccggtcaat cgaagaccac tggccgctgt tcaccttccg ggctgtctgg
     2221 ttcaggttgt tcccgatggc agccagatgc cgcagcaatg gcggcgatag tgtcggcagt
     2281 tttcctgtgc gtgcaaccgg ctcccccaga cagacccgcc gcatccattc cgccagtcgt
     2341 ttaccctcgc agcgttccag taaccgggcg tgctcctcat cggtaacccg tatcgtgagc
     2401 atcttctcgc gtttcatcgg tatcattccc cctaacaaat cccccataca aggagcctta
     2461 agaccatgac caaacaggaa aaaacagccc ttaacatggc tcgctttatc agaagccaga
     2521 cgctaaccct gctggaaaaa ctcaacgatc tggacgcgga cgaacaggca gacatctgcg
     2581 aatcacttca cgaccacgcc gacgaactct accgcagttg cctcgcacgc ttcggcgatg
     2641 acggtgaaag caactgaaac atgcagctcc cggagacgtt cacagcttgc ctgtgagcgg
     2701 atgccgggag cagacaagcc cgccagggcg cgtcagtgcg ggtgtcgggg cgcagccctg
     2761 acccagttca cagagcgata gcgatgtgta tactggctta tctcattttg catcggtgca
     2821 gaatggatgg gaagtgctcc atgtcaggag taaaaagccg cacagatgta aaaacagcgc
     2881 acccgataaa cagcacacac gcggacactg gcacaggcgc gtaagtgcac aatgcttgca
     2941 tctgtgactc ttccgcttcc tcgcccactc gctcactacg ttcggtcgct ggggctgcgg
     3001 cgagcggtgg gatcactctc gttgtgatgc agatccgttt ttttttttgc actggagtta
     3061 tcaggagttg cggtgcacat gggatcgtgc gatatgccgg atggtgaaag gttggaggga
     3121 acggcaacaa ctcacccctc ccagtgaagg gacgggtagt ttgccgctct cgatatgccg
     3181 gacggagcca aggccatcga tcacggggcg cgtcagtgga agaacccgcg cctgcgtgac
     3241 gtatgcgtct tcgccgcacc atctcacccg tcacgccacc acataccggg aactgccgcc
     3301 aaggtctaac tcaaccaatc tagccgcgct acatacggtt tttgtggcaa ctcatcaggt
     3361 gtccgctgtc g
//
