LOCUS       NZ_CP058221             1566 bp    DNA     circular CON 18-DEC-2023
DEFINITION  Escherichia coli strain 83972 plasmid pABU, complete sequence.
ACCESSION   NZ_CP058221
VERSION     NZ_CP058221.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN15325683
            Assembly: GCF_021559815.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1566)
  AUTHORS   Sproer,C., Tegelkamp,K., Wami,H., Bunk,B., Overmann,J. and
            Dobrindt,U.
  TITLE     Comparison three closely relates ST73 Escherichia coli strains
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1566)
  AUTHORS   Sproer,C., Tegelkamp,K., Wami,H., Bunk,B., Overmann,J. and
            Dobrindt,U.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUN-2020) Institute of Hygiene, University of
            Muenster, Mendelstrasse 7, Muenster 48149, Germany
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 16-JUN-2017
            Assembly Method :: RS_HGAP_Assembly.3 protocol v. 2.2.0; BWA v.
            07.7.17
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 122x
            Sequencing Technology             :: Illumina MiSeq and PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/17/2023 04:57:20
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,966
            CDSs (total)                      :: 4,850
            Genes (coding)                    :: 4,615
            CDSs (with protein)               :: 4,615
            Genes (RNA)                       :: 116
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 235
            CDSs (without protein)            :: 235
            Pseudo Genes (ambiguous residues) :: 0 of 235
            Pseudo Genes (frameshifted)       :: 98 of 235
            Pseudo Genes (incomplete)         :: 148 of 235
            Pseudo Genes (internal stop)      :: 59 of 235
            Pseudo Genes (multiple problems)  :: 61 of 235
            Pseudo Genes (short protein)      :: 4 of 235
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP058221.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1566
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="83972"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="pABU"
                     /geo_loc_name="Sweden"
                     /collection_date="1973"
     gene            101..580
                     /locus_tag="HW371_RS24740"
                     /old_locus_tag="HW371_24545"
     CDS             101..580
                     /locus_tag="HW371_RS24740"
                     /old_locus_tag="HW371_24545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001620079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_000275450.1"
                     /translation="MYIGTEEQRKKRLKELEKLNKESESDPKNNGPFTQVYQKGWERIR
                     ELSKDKQGVVAIPLYSFLAEHIDPSCGAVVADQQFLADKLGVSRSTIKRWLNYLESKNA
                     LVRIPVAGKVCAYALDPHEVWKGYNTSKNYAAFVTKTLVNKDGDIQRRIMAMFSN"
                     /name="helix-turn-helix domain-containing protein"
     Typing          1206..1286
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.341"
                     /coverage="87.0"
                     /evalue="2.0600000000000002e-29"
     Typing          complement(831..1091)
                     /name="Col(MG828)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.275"
                     /coverage="100.0"
                     /evalue="1.83e-109"
ORIGIN
        1 ggttagctca cgcatgtgtg agctaggtcg acctatcatg gtttacgttt gagctatgat
       61 ggcttatatt tgagccatca ttagaccgtg gagatttacc atgtatatcg ggactgaaga
      121 gcagcgaaaa aagcgtctaa aagaactgga aaaattaaac aaagaatcgg aatcagatcc
      181 gaaaaataac ggcccattca cccaggttta tcagaagggc tgggaaagga tccgagaact
      241 gtcgaaggac aagcagggag ttgtagcaat accgctttac tcgtttttag ctgagcacat
      301 agatccctca tgcggtgctg ttgttgccga tcagcagttt ttagcagata aattgggtgt
      361 tagccgaagc acaattaagc gctggctcaa ctacttagaa tcaaaaaacg cgttagtcag
      421 aattcctgtt gctggtaagg tttgtgcgta tgcactcgat ccacatgaag tctggaaggg
      481 atacaacaca tctaaaaact acgcggcgtt tgtcactaaa acactggtca acaaagacgg
      541 tgatattcag cgccgaatca tggccatgtt ttcaaattga gccagcggca ggcacaggca
      601 aaaaccccgt ttttggacaa tctgattcaa atgttaacat ttgacatcgg gttgtctatc
      661 ctgcattgct cttttgccgc ctcaaaatcc cttgcgtgtt tttgctcccc gatctccaga
      721 acgatcgagc cgccacggtt ccggcagcgc cttgagcgca accggaaacc gtctggggag
      781 aaccccagac ccccatcgct gtaacaccga cggtctacga ccacctacca accgagtggc
      841 tgcctgtacc gtgcaaatgg gctttgcagg gggctggcgc ggttcctggc gacctgaaag
      901 cccctggcta ggggtatcgg cgcgcctgac ctcctgaaac gctctgtaag cgtttttcgc
      961 gccttccatg ccctgacggg catttaaacc ccgtttcgtg cgtctgagag cttctgagcg
     1021 cgtttgaagg gctatctgac gacttatccc cgaaagaaca acagcggaat caccgacaac
     1081 atgcgagagg tggcaccgct cgccgcagcc ccagcgaccg aacgttagtg agcgagtggg
     1141 cgaggaagcg gaagagaacc ggaaaccaca ttgagcacgt acgcactgat gcggggtgtc
     1201 ggggcgaagc cctgaccaga tggcaaacgg aatatcgtcg cgggtgacgg tattacattt
     1261 gcacatcctg tcccgatttc tgaggcgttt tagcggtgaa cggacggcaa aaccatgatg
     1321 gagctgttga acgttgagag cgtgaaatct ggcaaaaatc acagnctggt aaggcttgca
     1381 gaggagtaag ccagtataca ctccgctatc gctacgtgac tgggtcaggg cttcgccccg
     1441 acaccccaaa aaagtgttcc gctttgcgca acactttcag cagaaaagat atttaagggc
     1501 gattttgtaa gttattgatt ttttagctac ttgcattatg ggttagctca cgcatgtgtg
     1561 gtctaa
//
